mRNA_H-paniculata_contig22472.5982.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22472.5982.1
Unique NamemRNA_H-paniculata_contig22472.5982.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: UPI0016531AD1 (uncharacterized protein LOC110900599 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531AD1)

HSP 1 Score: 77.4 bits (189), Expect = 5.140e-15
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVYV 204
            R++ E TR+ + T  +    W EAVR AVY LNR ST+  N  TPYE+W G  P L HLR+FGC  YV
Sbjct:  650 RTVLEATRSLLKTMKVPDTFWGEAVRHAVYVLNRVSTKALNNMTPYERWKGRKPTLQHLRVFGCVAYV 717          
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 77.0 bits (188), Expect = 6.950e-15
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVY 201
            +++ E  R+ +  A + ++ WAEA+ +AVY  NR+ T+   G TP+E W GE PK+DHLRIFGCTVY
Sbjct:   56 KTLMETVRSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPKVDHLRIFGCTVY 122          
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A1X7TDF3_AMPQE (Integrase catalytic domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TDF3_AMPQE)

HSP 1 Score: 71.2 bits (173), Expect = 1.700e-14
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCT 195
            R++ EM RA +  + + +  WAEA+ +AVY  NR  T+P    TPYE   GE PK+DHLRIFGCT
Sbjct:   35 RTLIEMVRAMLADSKLDKCFWAEALSTAVYLRNRCPTQPIEHMTPYEALFGECPKVDHLRIFGCT 99          
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A498NC17_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Labeo rohita TaxID=84645 RepID=A0A498NC17_LABRO)

HSP 1 Score: 74.7 bits (182), Expect = 4.270e-14
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVY 201
            +++ E  R+ +  A + ++ WAEA+ +AVY  NR+ T+   G TP+E W GE P +DHLRIFGCTVY
Sbjct:   56 KTLMETVRSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPTVDHLRIFGCTVY 122          
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A498LZ01_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Labeo rohita TaxID=84645 RepID=A0A498LZ01_LABRO)

HSP 1 Score: 74.7 bits (182), Expect = 4.520e-14
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVY 201
            +++ E  R+ +  A + ++ WAEA+ +AVY  NR+ T+   G TP+E W GE P +DHLRIFGCTVY
Sbjct:  314 KTLMETVRSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPTVDHLRIFGCTVY 380          
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A0V0ZTL5_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella patagoniensis TaxID=990121 RepID=A0A0V0ZTL5_9BILA)

HSP 1 Score: 73.9 bits (180), Expect = 8.420e-14
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVYV 204
            R++ E  RA + T N+ R  WAEAV +A Y LNR   R     TPYEKW G+ P ++HL+IFGC  YV
Sbjct:  151 RTLVEKARAMLHTRNLPRCLWAEAVHTAAYLLNRIPNRKETTKTPYEKWFGKRPTVEHLQIFGCDAYV 218          
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A4Y2R084_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2R084_ARAVE)

HSP 1 Score: 72.4 bits (176), Expect = 9.940e-14
Identity = 31/68 (45.59%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVYV 204
            R++ E  R+ +  A++ RR+WAEAV++A +C N   T    G TPYEKW G+ P L++LR+FGC  +V
Sbjct:    9 RTLVERARSMLADAHLDRRYWAEAVQTANHCKNIYPTVAATGTTPYEKWSGDKPNLEYLRVFGCRAFV 76          
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A5N6P097_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P097_9ASTR)

HSP 1 Score: 73.6 bits (179), Expect = 1.140e-13
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVYV 204
            R+I E+TR+ + T  +    W EAVR AVY LNR STR     TPYE W G+ P + HLR+FGC  YV
Sbjct:  324 RTIMEVTRSFLKTMEVPETLWGEAVRHAVYILNRVSTRSVKDQTPYECWRGKKPVIHHLRVFGCVGYV 391          
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 73.6 bits (179), Expect = 1.160e-13
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVY 201
            R++ EM R  +    + +  WAEAV ++VY LN   T+   G TP+E WHG TP ++HL++FGC  Y
Sbjct:  564 RTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCY 630          
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A4Y2T5A1_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2T5A1_ARAVE)

HSP 1 Score: 71.6 bits (174), Expect = 1.870e-13
Identity = 30/68 (44.12%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVYV 204
            R+  E  R+ +  A++ R++WAEAV++A +C N + T    G TPYEKW G+ P L++LR+FGC+ +V
Sbjct:    9 RTFVERARSMLADAHLDRKYWAEAVQTANHCKNISPTVAVTGMTPYEKWSGDKPNLEYLRVFGCSAFV 76          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0016531AD15.140e-1551.47uncharacterized protein LOC110900599 n=1 Tax=Helia... [more]
A0A498M2F0_LABRO6.950e-1549.25Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A1X7TDF3_AMPQE1.700e-1450.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A498NC17_LABRO4.270e-1447.76Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A498LZ01_LABRO4.520e-1447.76Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A0V0ZTL5_9BILA8.420e-1450.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2R084_ARAVE9.940e-1445.59Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6P097_9ASTR1.140e-1351.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A151T355_CAJCA1.160e-1343.28Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2T5A1_ARAVE1.870e-1344.12Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22472contigH-paniculata_contig22472:3245..3448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score74.3
Seed ortholog evalue2.2e-11
Seed eggNOG ortholog15368.BRADI2G01640.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size204
Cds size189
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.338687-UTR-H-paniculata_contig22472:3244..32591622929624.338687-UTR-H-paniculata_contig22472:3244..3259Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22472 3245..3259 +
1691480940.3968072-UTR-H-paniculata_contig22472:3244..32591691480940.3968072-UTR-H-paniculata_contig22472:3244..3259Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22472 3245..3259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.3542104-CDS-H-paniculata_contig22472:3259..34481622929624.3542104-CDS-H-paniculata_contig22472:3259..3448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22472 3260..3448 +
1691480940.4143305-CDS-H-paniculata_contig22472:3259..34481691480940.4143305-CDS-H-paniculata_contig22472:3259..3448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22472 3260..3448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22472.5982.1prot_H-paniculata_contig22472.5982.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22472 3260..3448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22472.5982.1

>prot_H-paniculata_contig22472.5982.1 ID=prot_H-paniculata_contig22472.5982.1|Name=mRNA_H-paniculata_contig22472.5982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPK
LDHLRIFGCTVYV
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mRNA from alignment at H-paniculata_contig22472:3245..3448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22472.5982.1 ID=mRNA_H-paniculata_contig22472.5982.1|Name=mRNA_H-paniculata_contig22472.5982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig22472:3245..3448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCAGCATTTTCGAGATGACAAGAGCCAGCATGATCACCGCCAACATGGG TCGTCGACATTGGGCGGAAGCGGTGCGCTCGGCGGTATACTGCCTAAATC GTGCCTCGACGCGACCGCACAACGGAGGAACCCCGTACGAAAAATGGCAC GGCGAGACACCAAAGTTGGACCACCTTCGCATCTTCGGCTGCACGGTGTA TGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig22472:3245..3448+

>mRNA_H-paniculata_contig22472.5982.1 ID=mRNA_H-paniculata_contig22472.5982.1|Name=mRNA_H-paniculata_contig22472.5982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig22472:3245..3448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAAGAGCCAGCATGATCACCGCCAACATGGGTCGTCGACATTGGGC
GGAAGCGGTGCGCTCGGCGGTATACTGCCTAAATCGTGCCTCGACGCGAC
CGCACAACGGAGGAACCCCGTACGAAAAATGGCACGGCGAGACACCAAAG
TTGGACCACCTTCGCATCTTCGGCTGCACGGTGTATGTTATGACAAGAGC
CAGCATGATCACCGCCAACATGGGTCGTCGACATTGGGCGGAAGCGGTGC
GCTCGGCGGTATACTGCCTAAATCGTGCCTCGACGCGACCGCACAACGGA
GGAACCCCGTACGAAAAATGGCACGGCGAGACACCAAAGTTGGACCACCT
TCGCATCTTCGGCTGCACGGTGTATGTT
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