prot_H-paniculata_contig22472.5982.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig22472.5982.1
Unique Nameprot_H-paniculata_contig22472.5982.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length63
Homology
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 73.6 bits (179), Expect = 9.330e-14
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 0
Query:    3 RASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVY 62
            R+ +  A + ++ WAEA+ +AVY  NR+ T+   G TP+E W GE PK+DHLRIFGCTVY
Sbjct:   63 RSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPKVDHLRIFGCTVY 122          
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: UPI0016531AD1 (uncharacterized protein LOC110900599 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531AD1)

HSP 1 Score: 72.4 bits (176), Expect = 2.400e-13
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 0
Query:    2 TRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVYV 63
            TR+ + T  +    W EAVR AVY LNR ST+  N  TPYE+W G  P L HLR+FGC  YV
Sbjct:  656 TRSLLKTMKVPDTFWGEAVRHAVYVLNRVSTKALNNMTPYERWKGRKPTLQHLRVFGCVAYV 717          
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A498NC17_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Labeo rohita TaxID=84645 RepID=A0A498NC17_LABRO)

HSP 1 Score: 71.2 bits (173), Expect = 5.870e-13
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0
Query:    3 RASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVY 62
            R+ +  A + ++ WAEA+ +AVY  NR+ T+   G TP+E W GE P +DHLRIFGCTVY
Sbjct:   63 RSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPTVDHLRIFGCTVY 122          
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A498LZ01_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Labeo rohita TaxID=84645 RepID=A0A498LZ01_LABRO)

HSP 1 Score: 71.2 bits (173), Expect = 6.070e-13
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0
Query:    3 RASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVY 62
            R+ +  A + ++ WAEA+ +AVY  NR+ T+   G TP+E W GE P +DHLRIFGCTVY
Sbjct:  321 RSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPTVDHLRIFGCTVY 380          
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A1X7TDF3_AMPQE (Integrase catalytic domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TDF3_AMPQE)

HSP 1 Score: 66.2 bits (160), Expect = 1.300e-12
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 0
Query:    1 MTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCT 60
            M RA +  + + +  WAEA+ +AVY  NR  T+P    TPYE   GE PK+DHLRIFGCT
Sbjct:   40 MVRAMLADSKLDKCFWAEALSTAVYLRNRCPTQPIEHMTPYEALFGECPKVDHLRIFGCT 99          
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A8J5ILC1_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5ILC1_ZINOF)

HSP 1 Score: 68.6 bits (166), Expect = 1.450e-12
Identity = 32/63 (50.79%), Postives = 38/63 (60.32%), Query Frame = 0
Query:    1 MTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVYV 63
            MTR+ +   +M  R W EAVR AVY LNR  T+     TP+E W G  P L HLR+FGC  YV
Sbjct:    3 MTRSLLKGTHMPARFWGEAVRHAVYLLNRLPTKALGDRTPFEAWMGRKPHLTHLRVFGCVAYV 65          
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: G4TQF2_SERID (Integrase catalytic domain-containing protein n=2 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TQF2_SERID)

HSP 1 Score: 70.1 bits (170), Expect = 1.560e-12
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 0
Query:    2 TRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVYV 63
            T A +  AN+    W  A  + V+  NRA  R HNG TPYE WHGETP +DHLR+FGC  YV
Sbjct:  635 TIAKLTEANLPPSFWGFAALATVHEFNRA--RVHNGKTPYEHWHGETPSVDHLRVFGCLAYV 694          
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A0V0ZTL5_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella patagoniensis TaxID=990121 RepID=A0A0V0ZTL5_9BILA)

HSP 1 Score: 69.7 bits (169), Expect = 2.110e-12
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 0
Query:    3 RASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVYV 63
            RA + T N+ R  WAEAV +A Y LNR   R     TPYEKW G+ P ++HL+IFGC  YV
Sbjct:  158 RAMLHTRNLPRCLWAEAVHTAAYLLNRIPNRKETTKTPYEKWFGKRPTVEHLQIFGCDAYV 218          
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A4Y2T5A1_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2T5A1_ARAVE)

HSP 1 Score: 68.2 bits (165), Expect = 3.070e-12
Identity = 28/61 (45.90%), Postives = 44/61 (72.13%), Query Frame = 0
Query:    3 RASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVYV 63
            R+ +  A++ R++WAEAV++A +C N + T    G TPYEKW G+ P L++LR+FGC+ +V
Sbjct:   16 RSMLADAHLDRKYWAEAVQTANHCKNISPTVAVTGMTPYEKWSGDKPNLEYLRVFGCSAFV 76          
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A4Y2R084_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2R084_ARAVE)

HSP 1 Score: 68.2 bits (165), Expect = 3.180e-12
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 0
Query:    3 RASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVYV 63
            R+ +  A++ RR+WAEAV++A +C N   T    G TPYEKW G+ P L++LR+FGC  +V
Sbjct:   16 RSMLADAHLDRRYWAEAVQTANHCKNIYPTVAATGTTPYEKWSGDKPNLEYLRVFGCRAFV 76          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A498M2F0_LABRO9.330e-1453.33Retrovirus-related Pol poly from transposon TNT 1-... [more]
UPI0016531AD12.400e-1353.23uncharacterized protein LOC110900599 n=1 Tax=Helia... [more]
A0A498NC17_LABRO5.870e-1351.67Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A498LZ01_LABRO6.070e-1351.67Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A1X7TDF3_AMPQE1.300e-1251.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5ILC1_ZINOF1.450e-1250.79Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
G4TQF2_SERID1.560e-1253.23Integrase catalytic domain-containing protein n=2 ... [more]
A0A0V0ZTL5_9BILA2.110e-1252.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2T5A1_ARAVE3.070e-1245.90Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2R084_ARAVE3.180e-1247.54Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF247coord: 9..60
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 9..60
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 10..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22472contigH-paniculata_contig22472:3260..3448 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22472.5982.1mRNA_H-paniculata_contig22472.5982.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig22472 3245..3448 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig22472.5982.1 ID=prot_H-paniculata_contig22472.5982.1|Name=mRNA_H-paniculata_contig22472.5982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPK
LDHLRIFGCTVYV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf