mRNA_H-paniculata_contig22472.5982.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: UPI0016531AD1 (uncharacterized protein LOC110900599 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531AD1) HSP 1 Score: 77.4 bits (189), Expect = 5.140e-15 Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1
Query: 1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVYV 204
R++ E TR+ + T + W EAVR AVY LNR ST+ N TPYE+W G P L HLR+FGC YV
Sbjct: 650 RTVLEATRSLLKTMKVPDTFWGEAVRHAVYVLNRVSTKALNNMTPYERWKGRKPTLQHLRVFGCVAYV 717
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO) HSP 1 Score: 77.0 bits (188), Expect = 6.950e-15 Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1
Query: 1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVY 201
+++ E R+ + A + ++ WAEA+ +AVY NR+ T+ G TP+E W GE PK+DHLRIFGCTVY
Sbjct: 56 KTLMETVRSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPKVDHLRIFGCTVY 122
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A1X7TDF3_AMPQE (Integrase catalytic domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TDF3_AMPQE) HSP 1 Score: 71.2 bits (173), Expect = 1.700e-14 Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCT 195
R++ EM RA + + + + WAEA+ +AVY NR T+P TPYE GE PK+DHLRIFGCT
Sbjct: 35 RTLIEMVRAMLADSKLDKCFWAEALSTAVYLRNRCPTQPIEHMTPYEALFGECPKVDHLRIFGCT 99
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A498NC17_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Labeo rohita TaxID=84645 RepID=A0A498NC17_LABRO) HSP 1 Score: 74.7 bits (182), Expect = 4.270e-14 Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1
Query: 1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVY 201
+++ E R+ + A + ++ WAEA+ +AVY NR+ T+ G TP+E W GE P +DHLRIFGCTVY
Sbjct: 56 KTLMETVRSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPTVDHLRIFGCTVY 122
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A498LZ01_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Labeo rohita TaxID=84645 RepID=A0A498LZ01_LABRO) HSP 1 Score: 74.7 bits (182), Expect = 4.520e-14 Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1
Query: 1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVY 201
+++ E R+ + A + ++ WAEA+ +AVY NR+ T+ G TP+E W GE P +DHLRIFGCTVY
Sbjct: 314 KTLMETVRSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPTVDHLRIFGCTVY 380
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A0V0ZTL5_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella patagoniensis TaxID=990121 RepID=A0A0V0ZTL5_9BILA) HSP 1 Score: 73.9 bits (180), Expect = 8.420e-14 Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 1
Query: 1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVYV 204
R++ E RA + T N+ R WAEAV +A Y LNR R TPYEKW G+ P ++HL+IFGC YV
Sbjct: 151 RTLVEKARAMLHTRNLPRCLWAEAVHTAAYLLNRIPNRKETTKTPYEKWFGKRPTVEHLQIFGCDAYV 218
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A4Y2R084_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2R084_ARAVE) HSP 1 Score: 72.4 bits (176), Expect = 9.940e-14 Identity = 31/68 (45.59%), Postives = 46/68 (67.65%), Query Frame = 1
Query: 1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVYV 204
R++ E R+ + A++ RR+WAEAV++A +C N T G TPYEKW G+ P L++LR+FGC +V
Sbjct: 9 RTLVERARSMLADAHLDRRYWAEAVQTANHCKNIYPTVAATGTTPYEKWSGDKPNLEYLRVFGCRAFV 76
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A5N6P097_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P097_9ASTR) HSP 1 Score: 73.6 bits (179), Expect = 1.140e-13 Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1
Query: 1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVYV 204
R+I E+TR+ + T + W EAVR AVY LNR STR TPYE W G+ P + HLR+FGC YV
Sbjct: 324 RTIMEVTRSFLKTMEVPETLWGEAVRHAVYILNRVSTRSVKDQTPYECWRGKKPVIHHLRVFGCVGYV 391
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA) HSP 1 Score: 73.6 bits (179), Expect = 1.160e-13 Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 1
Query: 1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVY 201
R++ EM R + + + WAEAV ++VY LN T+ G TP+E WHG TP ++HL++FGC Y
Sbjct: 564 RTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCY 630
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Match: A0A4Y2T5A1_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2T5A1_ARAVE) HSP 1 Score: 71.6 bits (174), Expect = 1.870e-13 Identity = 30/68 (44.12%), Postives = 47/68 (69.12%), Query Frame = 1
Query: 1 RSIFEMTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKLDHLRIFGCTVYV 204
R+ E R+ + A++ R++WAEAV++A +C N + T G TPYEKW G+ P L++LR+FGC+ +V
Sbjct: 9 RTFVERARSMLADAHLDRKYWAEAVQTANHCKNISPTVAVTGMTPYEKWSGDKPNLEYLRVFGCSAFV 76 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22472.5982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22472.5982.1 >prot_H-paniculata_contig22472.5982.1 ID=prot_H-paniculata_contig22472.5982.1|Name=mRNA_H-paniculata_contig22472.5982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp MTRASMITANMGRRHWAEAVRSAVYCLNRASTRPHNGGTPYEKWHGETPKback to top mRNA from alignment at H-paniculata_contig22472:3245..3448+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22472.5982.1 ID=mRNA_H-paniculata_contig22472.5982.1|Name=mRNA_H-paniculata_contig22472.5982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig22472:3245..3448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22472:3245..3448+ >mRNA_H-paniculata_contig22472.5982.1 ID=mRNA_H-paniculata_contig22472.5982.1|Name=mRNA_H-paniculata_contig22472.5982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig22472:3245..3448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |