prot_H-paniculata_contig21217.5563.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig21217.5563.1
Unique Nameprot_H-paniculata_contig21217.5563.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length71
Homology
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: W7T9C2_9STRA (Copia-like retrotransposable element (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9C2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.370e-11
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 0
Query:    1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL 70
            C  C++ K +K+   T   ++  E LELVHTD+ GP++ +S  G R+AI F DDY+R R  YT+R+KSE+L
Sbjct:    5 CGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYTMRRKSESL 75          
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 67.0 bits (162), Expect = 2.660e-11
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 0
Query:    1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL 70
            C AC KGK  ++  K  R  +   LLE+VHTDIAGP D  S  G R+ + F+DD+SR+   Y L++KSEAL
Sbjct:  365 CEACIKGKQHRQSFKVGRSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEAL 435          
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A0A9W6P7_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9W6P7_LYGHE)

HSP 1 Score: 66.6 bits (161), Expect = 3.630e-11
Identity = 29/71 (40.85%), Postives = 47/71 (66.20%), Query Frame = 0
Query:    1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVDKSFRG-CRFAIIFVDDYSRRRKAYTLRQKSEAL 70
            C AC KGK+ ++P   + + +T ++L+L+H+D+ GP+     G CR+ I F+DD+SR+   Y +R KSE L
Sbjct:  297 CDACIKGKNIRKPFPKFSKQETKDILDLIHSDVCGPLPVESNGKCRYFITFIDDFSRKAVVYFMRSKSEVL 367          
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: W7SYS1_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYS1_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 6.540e-11
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 0
Query:    1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL 70
            C  C++ K +K    T   ++  E LELVHTD+ GPV+ +S  G R+AI F DDY+R R  Y ++ KSE+L
Sbjct:   19 CGTCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESL 89          
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A7D9DC69_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DC69_PARCT)

HSP 1 Score: 65.1 bits (157), Expect = 1.250e-10
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 0
Query:    1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL 70
            C AC +GKS + P K   E Q+ + L+LVH+D+AGP+  +SF G R+ + F+DDYSR    Y +  KSE L
Sbjct:  433 CEACAEGKSHRAPFKPVGEVQSKKRLQLVHSDVAGPMKTESFGGARYFVTFIDDYSRCVTVYPITHKSEVL 503          
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.360e-10
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 0
Query:    1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL 70
            C  C++ K +K+   T   ++  E LELVHTD+ GPV+ +S  G R+AI F DDY+R R  Y ++ KSE+L
Sbjct:  103 CGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESL 173          
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 63.2 bits (152), Expect = 2.470e-10
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 0
Query:    1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL 70
            C+ C++ K +K+   T   ++  E LELVHTD+ GPV+ +S  G R+AI F DDY+R R  Y ++ KS++L
Sbjct:   37 CATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSL 107          
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.720e-10
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 0
Query:    1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL 70
            C  C++ K +K    T   ++  E LELVHTD+ GPV+ +S  G R+AI F DDY+R R  Y ++ KSE+L
Sbjct:   57 CGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESL 127          
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.180e-10
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 0
Query:    1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL 70
            C  C++ K +K    T   ++  E LELVHTD+ GPV+ +S  G R+AI F DDY+R R  Y ++ KSE+L
Sbjct:   57 CGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESL 127          
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.180e-10
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 0
Query:    1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL 70
            C+ C++ K +K    T   ++  E LELVHTD+ GPV+ +S  G R+AI F DDY+R R  Y ++ KSE+L
Sbjct:  107 CATCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESL 177          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7T9C2_9STRA1.370e-1146.48Copia-like retrotransposable element (Fragment) n=... [more]
A0A6A2WSU7_HIBSY2.660e-1149.30Integrase catalytic domain-containing protein n=2 ... [more]
A0A0A9W6P7_LYGHE3.630e-1140.85Retrovirus-related Pol polyprotein from transposon... [more]
W7SYS1_9STRA6.540e-1145.07Retrovirus-related pol polyprotein from transposon... [more]
A0A7D9DC69_PARCT1.250e-1046.48Retrovirus-related Pol poly from transposon TNT 1-... [more]
W7T174_9STRA2.360e-1045.07Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
K8YS61_NANGC2.470e-1043.66Retrovirus-related pol polyprotein from transposon... [more]
W7TGQ6_9STRA2.720e-1045.07Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
W7TIQ5_9STRA3.180e-1045.07Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7T9I7_9STRA3.180e-1045.07Copia-like retrotransposable element n=1 Tax=Nanno... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 15..70
e-value: 1.5E-6
score: 29.5
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 22..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21217contigH-paniculata_contig21217:3693..3905 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21217.5563.1mRNA_H-paniculata_contig21217.5563.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig21217 3564..3905 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig21217.5563.1 ID=prot_H-paniculata_contig21217.5563.1|Name=mRNA_H-paniculata_contig21217.5563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVDKSFRGCRFAIIF
VDDYSRRRKAYTLRQKSEAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf