mRNA_H-paniculata_contig21217.5563.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY) HSP 1 Score: 104 bits (259), Expect = 1.130e-23 Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = 1
Query: 1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVAKANGLRIKRLRSDQGGEYAGKPFRQFCAENSI 339
C AC KGK ++ K R + LLE+VHTDIAGP D S G R+ + F+DD+SR+ Y L++KSEAL LK+F+ K +G +K LRSD+GGEY K F +FC E+ I
Sbjct: 365 CEACIKGKQHRQSFKVGRSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGI 478
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A6G0Q0M4_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0Q0M4_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 9.600e-22 Identity = 47/120 (39.17%), Postives = 76/120 (63.33%), Query Frame = 1
Query: 1 CSACDKGKS-----SKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVAKANGLRIKRLRSDQGGEYAGKPFRQFCAENSIK 342
C+ C GK S+ P KT + + +L+L+H+D+ GP+ K+ RGC +A+ F+DD+SR Y +++K+E L K F+ D+ A G +IKRLRSD GGEY G+ F+++ ++ I+
Sbjct: 68 CAGCCMGKMREDNFSRSPEKTVK---SAGVLDLIHSDVMGPMQTKTPRGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIR 184
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A6G0JTE1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JTE1_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 2.940e-21 Identity = 47/120 (39.17%), Postives = 76/120 (63.33%), Query Frame = 1
Query: 1 CSACDKGKS-----SKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVAKANGLRIKRLRSDQGGEYAGKPFRQFCAENSIK 342
C+ C GK S+ P KT + + +L+L+H+D+ GP+ K+ GC +A+ F+DD+SR Y +++K+E L K+FE D+ A G +IKRLRSD GGEY G+ F+++ ++ I+
Sbjct: 17 CAGCCMGKMRGDNFSRSPEKTVK---SAGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIR 133
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A151S1T9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S1T9_CAJCA) HSP 1 Score: 94.4 bits (233), Expect = 4.520e-21 Identity = 48/114 (42.11%), Postives = 73/114 (64.04%), Query Frame = 1
Query: 1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVAKANGLRIKRLRSDQGGEYAGKPFRQFCAENSI 339
CS C GK ++ K + + +ELL+LVH+D+ GP+ KSF G + +IF+DD SR+ YTL++K + L KQF V + +G ++KR+R+D GGEY G PF +C ++ I
Sbjct: 163 CSHCMAGKQTRVSFKKHPPSRKSELLQLVHSDVCGPLKVKSFSGALYFVIFIDDCSRKLWVYTLQRKDQVLERFKQFHALVERQSGKKLKRIRTDNGGEYCG-PFDIYCKQHGI 275
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A6D2JNB5_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JNB5_9BRAS) HSP 1 Score: 91.7 bits (226), Expect = 6.450e-21 Identity = 49/115 (42.61%), Postives = 70/115 (60.87%), Query Frame = 1
Query: 1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVDK-SFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVAKANGLRIKRLRSDQGGEYAGKPFRQFCAENSIK 342
C C KGK ++E + E ++T L+LVH+DI GP+ S G R+ + F+DD+SR+ Y L +KSEAL K+F+ V + G ++ LR+D+GGEY K F FC E IK
Sbjct: 17 CEVCMKGKQNRESIPKKSEWKSTRGLQLVHSDICGPISPISESGKRYILNFIDDFSRKCWTYLLSEKSEALAVFKEFKAAVERELGEKLVCLRTDRGGEYNSKAFEAFCKETGIK 131
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A151RFW5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RFW5_CAJCA) HSP 1 Score: 92.4 bits (228), Expect = 9.640e-21 Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = 1
Query: 1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPV-DKSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVAKANGLRIKRLRSDQGGEYAGKPFRQFCAENSIK 342
C C GK ++ + E + LELVHTDI GP+ KSF R+ IIF+DDY R+ Y L++KSEA K F+ V K L IK L+SD+GGEY F +C E IK
Sbjct: 80 CEGCVFGKQARTNFQKKAEYRARRSLELVHTDICGPITSKSFSEKRYFIIFIDDYIRKTWVYFLKEKSEAFEAFKNFKAMVEKTTNLYIKALQSDRGGEYMSTAFTNYCEEQGIK 194
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A6A3LQ24_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LQ24_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.430e-20 Identity = 42/106 (39.62%), Postives = 70/106 (66.04%), Query Frame = 1
Query: 28 SKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVAKANGLRIKRLRSDQGGEYAGKPFRQFCAENSIK 342
S+ P KT + + +L+L+H+D+ GP+ K+ GC +A+ F+DD+SR Y +++K+E L K F+ D+ A G +IKRLRSD GGEY G+ F+++ ++ I+
Sbjct: 7 SRSPEKTVK---SAGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIR 109
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A6A3V4F8_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3V4F8_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 2.590e-20 Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 1
Query: 1 CSACDKGKS-----SKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVAKANGLRIKRLRSDQGGEYAGKPFRQFCAENSIK 342
C+ C GK S+ P KT + + +L+L+H+D+ GP+ K+ GC +A+ F+DD+SR Y +++K+E L K F+ D+ A G +IKRLRSD GGEY G+ F+++ A+ I+
Sbjct: 118 CAGCCMGKMREDNFSRSPEKTVK---SVGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLAKQGIR 234
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC) HSP 1 Score: 90.5 bits (223), Expect = 4.620e-20 Identity = 51/121 (42.15%), Postives = 74/121 (61.16%), Query Frame = 1
Query: 1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVA------KANGLRIKRLRSDQGGEYAGKPFRQFCAENSIK 342
C+ C++ K +K+ T ++ E LELVHTD+ GPV+ +S G R+AI F DDY+R R Y ++ KS++L LK++ +D+ K N LR LRSD GGEY G F+ FC + I+
Sbjct: 37 CATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDMNISFRDHKVNTLRG--LRSDNGGEYTGVDFKNFCKNHGIR 155
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: W7T9C2_9STRA (Copia-like retrotransposable element (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9C2_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 4.660e-20 Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = 1
Query: 1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVAKANGLRIKR----LRSDQGGEYAGKPFRQFCAENSIK 342
C C++ K +K+ T ++ E LELVHTD+ GP++ +S G R+AI F DDY+R R YT+R+KSE+L LK++ +D + + R + LRSD GGEY G F+ FC + I+
Sbjct: 5 CGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYTMRRKSESLDCLKRYIKDKSVLHRDRKMKTLIGLRSDNGGEYTGVDFKNFCKNHGIR 123 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21217.5563.1 >prot_H-paniculata_contig21217.5563.1 ID=prot_H-paniculata_contig21217.5563.1|Name=mRNA_H-paniculata_contig21217.5563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVDKSFRGCRFAIIFback to top mRNA from alignment at H-paniculata_contig21217:3564..3905- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21217.5563.1 ID=mRNA_H-paniculata_contig21217.5563.1|Name=mRNA_H-paniculata_contig21217.5563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at H-paniculata_contig21217:3564..3905- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21217:3564..3905- >mRNA_H-paniculata_contig21217.5563.1 ID=mRNA_H-paniculata_contig21217.5563.1|Name=mRNA_H-paniculata_contig21217.5563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig21217:3564..3905- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |