mRNA_H-paniculata_contig21217.5563.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21217.5563.1
Unique NamemRNA_H-paniculata_contig21217.5563.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 104 bits (259), Expect = 1.130e-23
Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = 1
Query:    1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVAKANGLRIKRLRSDQGGEYAGKPFRQFCAENSI 339
            C AC KGK  ++  K  R  +   LLE+VHTDIAGP D  S  G R+ + F+DD+SR+   Y L++KSEAL  LK+F+    K +G  +K LRSD+GGEY  K F +FC E+ I
Sbjct:  365 CEACIKGKQHRQSFKVGRSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGI 478          
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A6G0Q0M4_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0Q0M4_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 9.600e-22
Identity = 47/120 (39.17%), Postives = 76/120 (63.33%), Query Frame = 1
Query:    1 CSACDKGKS-----SKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVAKANGLRIKRLRSDQGGEYAGKPFRQFCAENSIK 342
            C+ C  GK      S+ P KT +   +  +L+L+H+D+ GP+  K+ RGC +A+ F+DD+SR    Y +++K+E L   K F+ D+  A G +IKRLRSD GGEY G+ F+++ ++  I+
Sbjct:   68 CAGCCMGKMREDNFSRSPEKTVK---SAGVLDLIHSDVMGPMQTKTPRGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIR 184          
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A6G0JTE1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JTE1_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.940e-21
Identity = 47/120 (39.17%), Postives = 76/120 (63.33%), Query Frame = 1
Query:    1 CSACDKGKS-----SKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVAKANGLRIKRLRSDQGGEYAGKPFRQFCAENSIK 342
            C+ C  GK      S+ P KT +   +  +L+L+H+D+ GP+  K+  GC +A+ F+DD+SR    Y +++K+E L   K+FE D+  A G +IKRLRSD GGEY G+ F+++ ++  I+
Sbjct:   17 CAGCCMGKMRGDNFSRSPEKTVK---SAGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIR 133          
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A151S1T9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S1T9_CAJCA)

HSP 1 Score: 94.4 bits (233), Expect = 4.520e-21
Identity = 48/114 (42.11%), Postives = 73/114 (64.04%), Query Frame = 1
Query:    1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVAKANGLRIKRLRSDQGGEYAGKPFRQFCAENSI 339
            CS C  GK ++   K +   + +ELL+LVH+D+ GP+  KSF G  + +IF+DD SR+   YTL++K + L   KQF   V + +G ++KR+R+D GGEY G PF  +C ++ I
Sbjct:  163 CSHCMAGKQTRVSFKKHPPSRKSELLQLVHSDVCGPLKVKSFSGALYFVIFIDDCSRKLWVYTLQRKDQVLERFKQFHALVERQSGKKLKRIRTDNGGEYCG-PFDIYCKQHGI 275          
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A6D2JNB5_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JNB5_9BRAS)

HSP 1 Score: 91.7 bits (226), Expect = 6.450e-21
Identity = 49/115 (42.61%), Postives = 70/115 (60.87%), Query Frame = 1
Query:    1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVDK-SFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVAKANGLRIKRLRSDQGGEYAGKPFRQFCAENSIK 342
            C  C KGK ++E +    E ++T  L+LVH+DI GP+   S  G R+ + F+DD+SR+   Y L +KSEAL   K+F+  V +  G ++  LR+D+GGEY  K F  FC E  IK
Sbjct:   17 CEVCMKGKQNRESIPKKSEWKSTRGLQLVHSDICGPISPISESGKRYILNFIDDFSRKCWTYLLSEKSEALAVFKEFKAAVERELGEKLVCLRTDRGGEYNSKAFEAFCKETGIK 131          
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A151RFW5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RFW5_CAJCA)

HSP 1 Score: 92.4 bits (228), Expect = 9.640e-21
Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = 1
Query:    1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPV-DKSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVAKANGLRIKRLRSDQGGEYAGKPFRQFCAENSIK 342
            C  C  GK ++   +   E +    LELVHTDI GP+  KSF   R+ IIF+DDY R+   Y L++KSEA    K F+  V K   L IK L+SD+GGEY    F  +C E  IK
Sbjct:   80 CEGCVFGKQARTNFQKKAEYRARRSLELVHTDICGPITSKSFSEKRYFIIFIDDYIRKTWVYFLKEKSEAFEAFKNFKAMVEKTTNLYIKALQSDRGGEYMSTAFTNYCEEQGIK 194          
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A6A3LQ24_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LQ24_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.430e-20
Identity = 42/106 (39.62%), Postives = 70/106 (66.04%), Query Frame = 1
Query:   28 SKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVAKANGLRIKRLRSDQGGEYAGKPFRQFCAENSIK 342
            S+ P KT +   +  +L+L+H+D+ GP+  K+  GC +A+ F+DD+SR    Y +++K+E L   K F+ D+  A G +IKRLRSD GGEY G+ F+++ ++  I+
Sbjct:    7 SRSPEKTVK---SAGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIR 109          
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: A0A6A3V4F8_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3V4F8_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.590e-20
Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    1 CSACDKGKS-----SKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVAKANGLRIKRLRSDQGGEYAGKPFRQFCAENSIK 342
            C+ C  GK      S+ P KT +   +  +L+L+H+D+ GP+  K+  GC +A+ F+DD+SR    Y +++K+E L   K F+ D+  A G +IKRLRSD GGEY G+ F+++ A+  I+
Sbjct:  118 CAGCCMGKMREDNFSRSPEKTVK---SVGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLAKQGIR 234          
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 90.5 bits (223), Expect = 4.620e-20
Identity = 51/121 (42.15%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVA------KANGLRIKRLRSDQGGEYAGKPFRQFCAENSIK 342
            C+ C++ K +K+   T   ++  E LELVHTD+ GPV+ +S  G R+AI F DDY+R R  Y ++ KS++L  LK++ +D+       K N LR   LRSD GGEY G  F+ FC  + I+
Sbjct:   37 CATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDMNISFRDHKVNTLRG--LRSDNGGEYTGVDFKNFCKNHGIR 155          
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Match: W7T9C2_9STRA (Copia-like retrotransposable element (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9C2_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.660e-20
Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVD-KSFRGCRFAIIFVDDYSRRRKAYTLRQKSEAL*TLKQFERDVAKANGLRIKR----LRSDQGGEYAGKPFRQFCAENSIK 342
            C  C++ K +K+   T   ++  E LELVHTD+ GP++ +S  G R+AI F DDY+R R  YT+R+KSE+L  LK++ +D +  +  R  +    LRSD GGEY G  F+ FC  + I+
Sbjct:    5 CGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYTMRRKSESLDCLKRYIKDKSVLHRDRKMKTLIGLRSDNGGEYTGVDFKNFCKNHGIR 123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21217.5563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A2WSU7_HIBSY1.130e-2348.25Integrase catalytic domain-containing protein n=2 ... [more]
A0A6G0Q0M4_9STRA9.600e-2239.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0JTE1_9STRA2.940e-2139.17Integrase catalytic domain-containing protein n=3 ... [more]
A0A151S1T9_CAJCA4.520e-2142.11Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2JNB5_9BRAS6.450e-2142.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A151RFW5_CAJCA9.640e-2144.35Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3LQ24_9STRA1.430e-2039.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3V4F8_9STRA2.590e-2039.17Integrase catalytic domain-containing protein n=3 ... [more]
K8YS61_NANGC4.620e-2042.15Retrovirus-related pol polyprotein from transposon... [more]
W7T9C2_9STRA4.660e-2042.02Copia-like retrotransposable element (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21217contigH-paniculata_contig21217:3564..3905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.8
Seed ortholog evalue7.6e-08
Seed eggNOG ortholog3641.EOY11267
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size342
Cds size213
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929565.5676198-UTR-H-paniculata_contig21217:3563..36921622929565.5676198-UTR-H-paniculata_contig21217:3563..3692Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21217 3564..3692 -
1691480916.5235276-UTR-H-paniculata_contig21217:3563..36921691480916.5235276-UTR-H-paniculata_contig21217:3563..3692Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21217 3564..3692 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929565.582248-CDS-H-paniculata_contig21217:3692..39051622929565.582248-CDS-H-paniculata_contig21217:3692..3905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21217 3693..3905 -
1691480916.5346165-CDS-H-paniculata_contig21217:3692..39051691480916.5346165-CDS-H-paniculata_contig21217:3692..3905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21217 3693..3905 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21217.5563.1prot_H-paniculata_contig21217.5563.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21217 3693..3905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21217.5563.1

>prot_H-paniculata_contig21217.5563.1 ID=prot_H-paniculata_contig21217.5563.1|Name=mRNA_H-paniculata_contig21217.5563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
CSACDKGKSSKEPVKTYREDQTTELLELVHTDIAGPVDKSFRGCRFAIIF
VDDYSRRRKAYTLRQKSEAL*
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mRNA from alignment at H-paniculata_contig21217:3564..3905-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21217.5563.1 ID=mRNA_H-paniculata_contig21217.5563.1|Name=mRNA_H-paniculata_contig21217.5563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at H-paniculata_contig21217:3564..3905- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTCGGCGTGTGACAAGGGGAAATCGTCGAAGGAGCCTGTGAAAACGTA TCGAGAAGATCAGACGACCGAGCTGTTGGAGCTGGTGCACACCGACATAG CCGGACCGGTGGACAAGTCCTTCAGAGGATGTCGCTTCGCCATCATCTTC GTCGACGACTACAGTAGAAGGCGCAAAGCCTATACCTTGCGACAAAAGTC GGAGGCGCTATGAACCCTGAAGCAATTCGAGAGGGACGTAGCGAAGGCAA ACGGTTTGCGGATTAAGCGCCTTCGGTCGGATCAGGGAGGAGAATATGCT GGGAAGCCTTTTAGGCAATTCTGCGCGGAAAATAGCATCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig21217:3564..3905-

>mRNA_H-paniculata_contig21217.5563.1 ID=mRNA_H-paniculata_contig21217.5563.1|Name=mRNA_H-paniculata_contig21217.5563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig21217:3564..3905- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTCGGCGTGTGACAAGGGGAAATCGTCGAAGGAGCCTGTGAAAACGTA
TCGAGAAGATCAGACGACCGAGCTGTTGGAGCTGGTGCACACCGACATAG
CCGGACCGGTGGACAAGTCCTTCAGAGGATGTCGCTTCGCCATCATCTTC
GTCGACGACTACAGTAGAAGGCGCAAAGCCTATACCTTGCGACAAAAGTC
GGAGGCGCTATGATGCTCGGCGTGTGACAAGGGGAAATCGTCGAAGGAGC
CTGTGAAAACGTATCGAGAAGATCAGACGACCGAGCTGTTGGAGCTGGTG
CACACCGACATAGCCGGACCGGTGGACAAGTCCTTCAGAGGATGTCGCTT
CGCCATCATCTTCGTCGACGACTACAGTAGAAGGCGCAAAGCCTATACCT
TGCGACAAAAGTCGGAGGCGCTATGA
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