mRNA_H-paniculata_contig20312.5259.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: A0A6H5KSL6_9PHAE (V-SNARE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSL6_9PHAE) HSP 1 Score: 115 bits (288), Expect = 7.250e-30 Identity = 66/90 (73.33%), Postives = 73/90 (81.11%), Query Frame = 1
Query: 13 SRLSLLDSRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRLFLYLVILGLSTAIILVLYFKTRRR 282
SRLSL DSRRVLEETEGIGR V+GDLESQRESLLRS A+VRDTG + +AR LL SI+R+E RHRL LY VI LS AI+ VLY K RRR
Sbjct: 152 SRLSLQDSRRVLEETEGIGRGVMGDLESQRESLLRSRASVRDTGAAAGQARRLLGSISRRELRHRLCLYAVIALLSAAIVFVLYLKIRRR 241
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: A0A7S1C7L7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7L7_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 7.160e-9 Identity = 35/82 (42.68%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 4 LHRSRLSLLDSRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRLFLYLVILGLSTAI 249
+ RS L ++RR + ETE +G ++G+L SQRE+LLR+H V++T R++ RAR +L +I R+ ++ L++VIL L AI
Sbjct: 135 MDRSTAVLEETRRTVMETEEVGVGIMGNLHSQRETLLRAHDKVKETNRLTTRARRVLNNIKRRACYNQALLWVVILFLLGAI 216
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: A0A7S2RIE7_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RIE7_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 7.080e-8 Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1
Query: 4 LHRSRLSLLDSRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRLFLYLVILGLSTAIILVLYFKTRRR 282
L RS L +S+++L ETE IG +V+ +L+SQ ESLLR+H V T AR LR ++R+ ++L L+++I+ L +L+LYFK +R
Sbjct: 140 LDRSSAFLNESKQILGETEDIGNNVLTNLDSQHESLLRAHNKVDRTNVNVVEARSALRRMSRRACYNKLVLWVIIILLVVLNVLLLYFKFIKR 232
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: A0A0G4EKS9_VITBC (V-SNARE domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EKS9_VITBC) HSP 1 Score: 55.5 bits (132), Expect = 4.760e-7 Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 1
Query: 25 LLDSRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRLFLYLVILGLSTAIILVLYFK 270
L +SRR+ ETE IG +++GDL SQRE++LR+ N+ D D AR + ++ R+ +++ LY +I AII ++Y+K
Sbjct: 143 LEESRRLALETEQIGGEILGDLRSQRETILRTRHNLSDVSYNLDWARRTIANMGRRVVANKILLYSIIGVCVLAIIFIIYWK 224
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: A0A2D4BRC4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRC4_PYTIN) HSP 1 Score: 53.1 bits (126), Expect = 2.490e-6 Identity = 29/77 (37.66%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 34 SRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRLFLYLVILGLSTAIILVLY 264
S++++ E+E + + + DLE QRE L+ V +T ++ A+ LLR IA + +R +LFLYL+I+ L+ I+V Y
Sbjct: 74 SKKMVAESEQVAKHTLVDLELQREQLVGMKGMVAETSSMTSEAKELLRKIADRNYRRKLFLYLIIVVLAVTDIVVFY 150
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: UPI001CFC20E4 (vesicle transport through interaction with t-SNAREs homolog 1B n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFC20E4) HSP 1 Score: 53.1 bits (126), Expect = 3.350e-6 Identity = 32/92 (34.78%), Postives = 59/92 (64.13%), Query Frame = 1
Query: 4 LHRSRLSLLDSRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRL---FLYLVILGLSTAIILVLYFK 270
L+R+ S+ S++V ET+ IG +++GDLE QR+ L+R+ + TG R+R +LRS++RK ++L F+ +V LG+ ++ + +F+
Sbjct: 133 LNRASQSIERSQKVAIETDHIGAEIIGDLEQQRDQLVRTKDRLVHTGEDLSRSRKILRSMSRKIVTNKLLLSFIIIVELGILGGVVYLKFFR 224
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: UPI000C20F4F1 (t-SNARE VTI1 n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C20F4F1) HSP 1 Score: 49.3 bits (116), Expect = 2.260e-5 Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 1
Query: 1 VLHRSRLSLLDSRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRLFLYLVILGLSTAIILVLYFK 270
+L R+ SL + +V ETE IG +VV +L SQRE+LLR+ + D +R++LR ++R ++L L L+I+ +I V Y K
Sbjct: 23 ILARTGDSLARTNQVAIETENIGTEVVSELSSQRETLLRAKNRLTHADEQLDSSRNILRKMSRNVLYNKLILVLIIIVEIGILITVCYMK 112
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: A0A5J5ETY3_9PEZI (t-SNARE n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5ETY3_9PEZI) HSP 1 Score: 50.4 bits (119), Expect = 3.130e-5 Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 1
Query: 4 LHRSRLSLLDSRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRL 210
L RS L +S R+ ETE IG ++GDL SQRE+++R+H + + R DR+ LR +AR+ +R+
Sbjct: 129 LERSSQRLRESERIALETESIGAGILGDLASQRETIMRTHDTLNEGERYLDRSVKTLRGMARRMATNRI 197
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: M4BME4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BME4_HYAAE) HSP 1 Score: 49.3 bits (116), Expect = 3.450e-5 Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 1
Query: 34 SRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRLFLYLVILGLSTAIILVLY 264
+RR +EE+E + ++V+ DLE Q L V +T ++ + RHLL+ IA + R ++ LY+VI+ L+ ILV Y
Sbjct: 59 TRRTVEESEEVAKNVLVDLELQHSQLHEMKGVVSETSGMTSQVRHLLQMIATRSKRKKVCLYMVIVALAITDILVFY 135
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: A0A6V7KNZ0_9HYME (Uncharacterized protein n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7KNZ0_9HYME) HSP 1 Score: 48.5 bits (114), Expect = 4.470e-5 Identity = 30/87 (34.48%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 10 RSRLSLLDSRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRLFLYLVILGLSTAIILVLYFK 270
R+ S+ S+RV ETE +GR+V+ +L +QRE+LL + + DT + + +R ++R I R+ ++L L L+I+ + L +Y K
Sbjct: 24 RASQSVARSQRVAAETEQLGREVINELGTQRETLLGAKRRLEDTDQELNTSRKVMRLITRRVLTNKLALLLIIVLEVAILALTVYLK 110 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20312.5259.1 >prot_H-paniculata_contig20312.5259.1 ID=prot_H-paniculata_contig20312.5259.1|Name=mRNA_H-paniculata_contig20312.5259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp VLHRSRLSLLDSRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVback to top mRNA from alignment at H-paniculata_contig20312:4093..4383+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20312.5259.1 ID=mRNA_H-paniculata_contig20312.5259.1|Name=mRNA_H-paniculata_contig20312.5259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at H-paniculata_contig20312:4093..4383+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20312:4093..4383+ >mRNA_H-paniculata_contig20312.5259.1 ID=mRNA_H-paniculata_contig20312.5259.1|Name=mRNA_H-paniculata_contig20312.5259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig20312:4093..4383+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |