mRNA_H-paniculata_contig20312.5259.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20312.5259.1
Unique NamemRNA_H-paniculata_contig20312.5259.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: A0A6H5KSL6_9PHAE (V-SNARE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSL6_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 7.250e-30
Identity = 66/90 (73.33%), Postives = 73/90 (81.11%), Query Frame = 1
Query:   13 SRLSLLDSRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRLFLYLVILGLSTAIILVLYFKTRRR 282
            SRLSL DSRRVLEETEGIGR V+GDLESQRESLLRS A+VRDTG  + +AR LL SI+R+E RHRL LY VI  LS AI+ VLY K RRR
Sbjct:  152 SRLSLQDSRRVLEETEGIGRGVMGDLESQRESLLRSRASVRDTGAAAGQARRLLGSISRRELRHRLCLYAVIALLSAAIVFVLYLKIRRR 241          
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: A0A7S1C7L7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7L7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 7.160e-9
Identity = 35/82 (42.68%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    4 LHRSRLSLLDSRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRLFLYLVILGLSTAI 249
            + RS   L ++RR + ETE +G  ++G+L SQRE+LLR+H  V++T R++ RAR +L +I R+   ++  L++VIL L  AI
Sbjct:  135 MDRSTAVLEETRRTVMETEEVGVGIMGNLHSQRETLLRAHDKVKETNRLTTRARRVLNNIKRRACYNQALLWVVILFLLGAI 216          
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: A0A7S2RIE7_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RIE7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 7.080e-8
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    4 LHRSRLSLLDSRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRLFLYLVILGLSTAIILVLYFKTRRR 282
            L RS   L +S+++L ETE IG +V+ +L+SQ ESLLR+H  V  T      AR  LR ++R+   ++L L+++I+ L    +L+LYFK  +R
Sbjct:  140 LDRSSAFLNESKQILGETEDIGNNVLTNLDSQHESLLRAHNKVDRTNVNVVEARSALRRMSRRACYNKLVLWVIIILLVVLNVLLLYFKFIKR 232          
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: A0A0G4EKS9_VITBC (V-SNARE domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EKS9_VITBC)

HSP 1 Score: 55.5 bits (132), Expect = 4.760e-7
Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   25 LLDSRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRLFLYLVILGLSTAIILVLYFK 270
            L +SRR+  ETE IG +++GDL SQRE++LR+  N+ D     D AR  + ++ R+   +++ LY +I     AII ++Y+K
Sbjct:  143 LEESRRLALETEQIGGEILGDLRSQRETILRTRHNLSDVSYNLDWARRTIANMGRRVVANKILLYSIIGVCVLAIIFIIYWK 224          
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: A0A2D4BRC4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRC4_PYTIN)

HSP 1 Score: 53.1 bits (126), Expect = 2.490e-6
Identity = 29/77 (37.66%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   34 SRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRLFLYLVILGLSTAIILVLY 264
            S++++ E+E + +  + DLE QRE L+     V +T  ++  A+ LLR IA + +R +LFLYL+I+ L+   I+V Y
Sbjct:   74 SKKMVAESEQVAKHTLVDLELQREQLVGMKGMVAETSSMTSEAKELLRKIADRNYRRKLFLYLIIVVLAVTDIVVFY 150          
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: UPI001CFC20E4 (vesicle transport through interaction with t-SNAREs homolog 1B n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFC20E4)

HSP 1 Score: 53.1 bits (126), Expect = 3.350e-6
Identity = 32/92 (34.78%), Postives = 59/92 (64.13%), Query Frame = 1
Query:    4 LHRSRLSLLDSRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRL---FLYLVILGLSTAIILVLYFK 270
            L+R+  S+  S++V  ET+ IG +++GDLE QR+ L+R+   +  TG    R+R +LRS++RK   ++L   F+ +V LG+   ++ + +F+
Sbjct:  133 LNRASQSIERSQKVAIETDHIGAEIIGDLEQQRDQLVRTKDRLVHTGEDLSRSRKILRSMSRKIVTNKLLLSFIIIVELGILGGVVYLKFFR 224          
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: UPI000C20F4F1 (t-SNARE VTI1 n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C20F4F1)

HSP 1 Score: 49.3 bits (116), Expect = 2.260e-5
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 1
Query:    1 VLHRSRLSLLDSRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRLFLYLVILGLSTAIILVLYFK 270
            +L R+  SL  + +V  ETE IG +VV +L SQRE+LLR+   +       D +R++LR ++R    ++L L L+I+     +I V Y K
Sbjct:   23 ILARTGDSLARTNQVAIETENIGTEVVSELSSQRETLLRAKNRLTHADEQLDSSRNILRKMSRNVLYNKLILVLIIIVEIGILITVCYMK 112          
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: A0A5J5ETY3_9PEZI (t-SNARE n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5ETY3_9PEZI)

HSP 1 Score: 50.4 bits (119), Expect = 3.130e-5
Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    4 LHRSRLSLLDSRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRL 210
            L RS   L +S R+  ETE IG  ++GDL SQRE+++R+H  + +  R  DR+   LR +AR+   +R+
Sbjct:  129 LERSSQRLRESERIALETESIGAGILGDLASQRETIMRTHDTLNEGERYLDRSVKTLRGMARRMATNRI 197          
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: M4BME4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BME4_HYAAE)

HSP 1 Score: 49.3 bits (116), Expect = 3.450e-5
Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   34 SRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRLFLYLVILGLSTAIILVLY 264
            +RR +EE+E + ++V+ DLE Q   L      V +T  ++ + RHLL+ IA +  R ++ LY+VI+ L+   ILV Y
Sbjct:   59 TRRTVEESEEVAKNVLVDLELQHSQLHEMKGVVSETSGMTSQVRHLLQMIATRSKRKKVCLYMVIVALAITDILVFY 135          
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Match: A0A6V7KNZ0_9HYME (Uncharacterized protein n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7KNZ0_9HYME)

HSP 1 Score: 48.5 bits (114), Expect = 4.470e-5
Identity = 30/87 (34.48%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   10 RSRLSLLDSRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRVSDRARHLLRSIARKEFRHRLFLYLVILGLSTAIILVLYFK 270
            R+  S+  S+RV  ETE +GR+V+ +L +QRE+LL +   + DT +  + +R ++R I R+   ++L L L+I+     + L +Y K
Sbjct:   24 RASQSVARSQRVAAETEQLGREVINELGTQRETLLGAKRRLEDTDQELNTSRKVMRLITRRVLTNKLALLLIIVLEVAILALTVYLK 110          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20312.5259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KSL6_9PHAE7.250e-3073.33V-SNARE domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S1C7L7_9STRA7.160e-942.68Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S2RIE7_9STRA7.080e-840.86Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A0G4EKS9_VITBC4.760e-739.02V-SNARE domain-containing protein n=2 Tax=Vitrella... [more]
A0A2D4BRC4_PYTIN2.490e-637.66Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
UPI001CFC20E43.350e-634.78vesicle transport through interaction with t-SNARE... [more]
UPI000C20F4F12.260e-536.67t-SNARE VTI1 n=1 Tax=Onthophagus taurus TaxID=1663... [more]
A0A5J5ETY3_9PEZI3.130e-540.58t-SNARE n=1 Tax=Sphaerosporella brunnea TaxID=1250... [more]
M4BME4_HYAAE3.450e-537.66Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A6V7KNZ0_9HYME4.470e-534.48Uncharacterized protein n=1 Tax=Bracon brevicornis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20312contigH-paniculata_contig20312:4093..4383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue3.5e-24
Seed eggNOG ortholog2880.D8LHK7
Preferred nameVTI1A
KEGG koko:K08493,ko:K08494,ko:K10406,ko:K18749
KEGG Pathwayko04130,ko04138,map04130,map04138
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0002576,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005767,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005776,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005802,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006891,GO:0006892,GO:0006896,GO:0006904,GO:0006906,GO:0006914,GO:0006996,GO:0007030,GO:0007033,GO:0007034,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008200,GO:0008283,GO:0009056,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016247,GO:0016248,GO:0016482,GO:0017081,GO:0019869,GO:0022406,GO:0030133,GO:0030134,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030173,GO:0030424,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031091,GO:0031093,GO:0031201,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031901,GO:0031902,GO:0031974,GO:0031982,GO:0031983,GO:0031984,GO:0032010,GO:0032501,GO:0032588,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033267,GO:0033365,GO:0034613,GO:0034774,GO:0036477,GO:0042144,GO:0042147,GO:0042175,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043679,GO:0044237,GO:0044248,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045055,GO:0045184,GO:0045202,GO:0045324,GO:0045335,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048280,GO:0048284,GO:0048471,GO:0050789,GO:0050879,GO:0050881,GO:0050882,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051649,GO:0055037,GO:0055038,GO:0060205,GO:0060341,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065009,GO:0070013,GO:0070382,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090161,GO:0090174,GO:0097458,GO:0097576,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:0099106,GO:0099503,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0150034,GO:1903076,GO:1903827,GO:1904375,GO:1905475
EggNOG free text desc.vesicle fusion with Golgi apparatus
EggNOG OGsKOG1666@1,KOG1666@2759
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-10_002250.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04131,ko04812
Exons1
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929527.6544204-CDS-H-paniculata_contig20312:4092..43831622929527.6544204-CDS-H-paniculata_contig20312:4092..4383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20312 4093..4383 +
1691480899.5261304-CDS-H-paniculata_contig20312:4092..43831691480899.5261304-CDS-H-paniculata_contig20312:4092..4383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20312 4093..4383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20312.5259.1prot_H-paniculata_contig20312.5259.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20312 4093..4383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20312.5259.1

>prot_H-paniculata_contig20312.5259.1 ID=prot_H-paniculata_contig20312.5259.1|Name=mRNA_H-paniculata_contig20312.5259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
VLHRSRLSLLDSRRVLEETEGIGRDVVGDLESQRESLLRSHANVRDTGRV
SDRARHLLRSIARKEFRHRLFLYLVILGLSTAIILVLYFKTRRRLK*
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mRNA from alignment at H-paniculata_contig20312:4093..4383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20312.5259.1 ID=mRNA_H-paniculata_contig20312.5259.1|Name=mRNA_H-paniculata_contig20312.5259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at H-paniculata_contig20312:4093..4383+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTGCACAGGAGCCGCTTGAGCCTCTTGGATTCTCGACGTGTCTTGGA GGAGACGGAAGGGATAGGCCGGGACGTGGTTGGGGACCTTGAATCTCAGC GAGAGTCGCTGCTGCGCTCGCACGCGAACGTTCGCGACACGGGGCGCGTG TCGGACCGAGCGCGACATTTGCTTAGATCCATCGCTCGGAAGGAGTTTAG GCACCGGTTATTCTTGTACCTCGTGATCCTGGGGCTCAGCACGGCCATTA TTTTAGTTTTGTACTTCAAGACCCGCCGTCGTCTGAAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig20312:4093..4383+

>mRNA_H-paniculata_contig20312.5259.1 ID=mRNA_H-paniculata_contig20312.5259.1|Name=mRNA_H-paniculata_contig20312.5259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig20312:4093..4383+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTGCACAGGAGCCGCTTGAGCCTCTTGGATTCTCGACGTGTCTTGGA
GGAGACGGAAGGGATAGGCCGGGACGTGGTTGGGGACCTTGAATCTCAGC
GAGAGTCGCTGCTGCGCTCGCACGCGAACGTTCGCGACACGGGGCGCGTG
TCGGACCGAGCGCGACATTTGCTTAGATCCATCGCTCGGAAGGAGTTTAG
GCACCGGTTATTCTTGTACCTCGTGATCCTGGGGCTCAGCACGGCCATTA
TTTTAGTTTTGTACTTCAAGACCCGCCGTCGTCTGAAGTAAGTTTTGCAC
AGGAGCCGCTTGAGCCTCTTGGATTCTCGACGTGTCTTGGAGGAGACGGA
AGGGATAGGCCGGGACGTGGTTGGGGACCTTGAATCTCAGCGAGAGTCGC
TGCTGCGCTCGCACGCGAACGTTCGCGACACGGGGCGCGTGTCGGACCGA
GCGCGACATTTGCTTAGATCCATCGCTCGGAAGGAGTTTAGGCACCGGTT
ATTCTTGTACCTCGTGATCCTGGGGCTCAGCACGGCCATTATTTTAGTTT
TGTACTTCAAGACCCGCCGTCGTCTGAAGTAA
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