mRNA_H-paniculata_contig20030.5149.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20030.5149.1
Unique NamemRNA_H-paniculata_contig20030.5149.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20030.5149.1 vs. uniprot
Match: A0A2H9ZU53_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZU53_9ASPA)

HSP 1 Score: 209 bits (532), Expect = 1.520e-59
Identity = 128/379 (33.77%), Postives = 208/379 (54.88%), Query Frame = 1
Query:   10 NVFYVPEASDSILSVKRMVSQGMEAYFGSERRWLYYDGITIPFEHASRKDYLLRTIVGDEVEVQAAKRTIGKQVKVLRLFSNDCTTPKNNEKRQLHERIGH--VRDLPTVARQQGI----RLSGKLGVCSACEKGKASKQRVKKYREGRTTEPLELVHTEIAGPVD-KSFGGCRFAIIFVNDYSRMRQVYTLRLKSKALWALKQFERDVARENALQIKRLRPNQ*GEYTGKPFRQFCSEIGIKQEFSAA*TPQQDGVAGRTWRSIFEMARVNMITVNMGRRYWAEAARSAVYCLNLAPMRSHNGGILYEKWHGETPKLDHLRVFGCTAYVMFQSQQRCKIDDEA*AGVFLGYDEDRPSYRIYKPKNKSVQLSRNVRFDE 1125
            NVF+VP+ + ++LSV ++V+ G    F         D  T        KD     I+ D   +Q     +   +++  + ++     K NE    H R GH  +  L  + ++  +    +++    +C  C  GK S++     R  R T PLELV++++ GP+  +S  G R+ I+F++DY+RM  VY L+ KS+AL A K F+  V R++   IK LR ++ GE+    F+ FC E GI +E +A  TP+Q+GVA R  R+I EMAR  +    +  ++WAE+  +AVY LN++P ++     LYE W G   ++ HL++FGC AYV   S  R K++D++   +F+GY     +YR+Y P +K + +SR+V F+E
Sbjct:   49 NVFFVPKLAHNLLSVGQLVASGYSILF---------DNATCKI-----KDKESCQIIAD---IQMTSNNMF-PLRISSIGNHALIVKKMNESTLWHFRYGHLHINGLKLLNQKNMVIGLPKINDLENICEECLYGKQSRKSFLIGRTCRATHPLELVYSDLCGPMRIESLSGSRYFILFIDDYTRMNWVYFLKNKSEALEAFKIFKAFVERQSGYFIKVLRTDRGGEFLSHEFKAFCEENGIHRELTAPYTPEQNGVAERKNRTIVEMARSLLKAKGIPNQFWAESVATAVYLLNISPTKAILNRTLYEVWKGRKSRISHLKIFGCIAYVYVNSHDRHKLEDKSEKCIFIGYCPQSKAYRLYNPCSKKLIISRSVIFEE 409          
BLAST of mRNA_H-paniculata_contig20030.5149.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 217 bits (553), Expect = 3.360e-59
Identity = 109/285 (38.25%), Postives = 163/285 (57.19%), Query Frame = 1
Query:  295 HERIGHVRDLPTVARQQGIRLSGKL-------GVCSACEKGKASKQRVKKYREGRTTEPLELVHTEIAGPVDK-SFGGCRFAIIFVNDYSRMRQVYTLRLKSKALWALKQFERDVARENALQIKRLRPNQ*GEYTGKPFRQFCSEIGIKQEFSAA*TPQQDGVAGRTWRSIFEMARVNMITVNMGRRYWAEAARSAVYCLNLAPMRSHNGGILYEKWHGETPKLDHLRVFGCTAYVMFQSQQRCKIDDEA*AGVFLGYDEDRPSYRIYKPKNKSVQLSRNVRFDE 1125
            H+R+GH     T+ R     L   L        +C  C+ GK  K    K    R TE L+LVHT++ GP+   S  G ++ ++F++DY+RM  V+ L+ KS       +F+  V  E  LQ+KRLR +   EYT   F++FC ++GI+ + +   TPQQ+GV+ R  R++ EMAR  +    + + +WAEA  ++VY LNL P ++  G   +E WHG TP ++HL+VFGC  Y +    +R K+D ++  G+FLGY      YRIY P  K + +SRNV+FDE
Sbjct:  397 HKRLGHF-SYSTLKRMSSNDLVKNLPAIQDNANLCDVCQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDE 680          
BLAST of mRNA_H-paniculata_contig20030.5149.1 vs. uniprot
Match: A0A2Z7BCE9_9LAMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BCE9_9LAMI)

HSP 1 Score: 208 bits (530), Expect = 1.560e-57
Identity = 120/384 (31.25%), Postives = 202/384 (52.60%), Query Frame = 1
Query:    1 IVCNVFYVPEASDSILSVKRMVSQGMEAYFGSERRWLYYDGITIPFEHASRKDYLLRTIVGDEVEVQAAKRTIGKQVKVLRLFSNDCTTPKNNEKRQLHERIGHVRD--LPTVARQQGIRLSGKL----GVCSACEKGKASKQRVKKYREGRTTEPLELVHTEIAGPV-DKSFGGCRFAIIFVNDYSRMRQVYTLRLKSKALWALKQFERDVARENALQIKRLRPNQ*GEYTGKPFRQFCSEIGIKQEFSAA*TPQQDGVAGRTWRSIFEMARVNMITVNMGRRYWAEAARSAVYCLNLAPMRSHNGGILYEKWHGETPKLDHLRVFGCTAYVMFQSQQRCKIDDEA*AGVFLGYDEDRPSYRIYKPKNKSVQLSRNVRFDEED 1131
            ++ NV Y PE + ++ SV +++  G    F      +            +  +  +  +V  ++E                  S+   T   N  +  H R GH+    L  + +++ +R   ++     VC  C  GK SK+     +  R TEPLELVH ++ GP+  ++ GG ++ ++FV+DYSRM  VY L+ KS+A     +F+  V ++    +K LR ++ GE+T   F Q+C + GI +E +A  TP+Q+GVA R  R+I EMAR  + +  +   +WAEA  +AVY +NL+P ++      YE W G+ P ++HL++FGC  YV+  + +R K+++++   +F+GY     +YR+Y P    V +SRN  F+EED
Sbjct:  211 LISNVLYTPELAHNLFSVGQLLLSGFTILFDESHCIITEKATGHVLAKVNMAENHMFPLVFSKLE------------------SHAMVTMTKNASQLWHLRYGHLHTAGLRLLNQKEMVRGLPRIDVDGAVCEGCMYGKQSKRSFPVGQSWRATEPLELVHADLCGPMRTETLGGSKYFLLFVDDYSRMSWVYFLKFKSEAFGQFFKFKALVEKQKGSNLKILRTDRGGEFTSMEFNQYCEKHGIHKELTAPYTPEQNGVAERKNRTIVEMARSMLKSKGLPYNFWAEAVTTAVYLINLSPTKAVMNKTPYEAWSGKRPSVEHLKIFGCIVYVLINANERHKLEEKSIKCIFIGYCSQSKAYRVYNPATGKVIVSRNTVFNEED 576          
BLAST of mRNA_H-paniculata_contig20030.5149.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464)

HSP 1 Score: 210 bits (535), Expect = 4.780e-57
Identity = 126/386 (32.64%), Postives = 200/386 (51.81%), Query Frame = 1
Query:    4 VCNVFYVPEASDSILSVKRMVSQGMEAYFGSERRWLYYDGITIPFEHASRKDYLLRTIVGDEVEVQAAKRTIGKQVKVLRLFSNDCT----TPKNNEKRQLHERIGHVR--DLPTVARQQGIR----LSGKLGVCSACEKGKASKQRVKKYREGRTTEPLELVHTEIAGPVD-KSFGGCRFAIIFVNDYSRMRQVYTLRLKSKALWALKQFERDVARENALQIKRLRPNQ*GEYTGKPFRQFCSEIGIKQEFSAA*TPQQDGVAGRTWRSIFEMARVNMITVNMGRRYWAEAARSAVYCLNLAPMRSHNGGILYEKWHGETPKLDHLRVFGCTAYVMFQSQQRCKIDDEA*AGVFLGYDEDRPSYRIYKPKNKSVQLSRNVRFDEE 1128
            + NV+YVP   ++ILS+ +++ +G + +                      KD+ L   + D       K  + K    L    ND          N     H R GH+    L  ++++  +R    +S    +C  C  GK  ++   K    R  +PLEL+HT+I GP+   S G   + ++F++D+SR   VY L+ KS+A    K+F+  V +E+ L IK +R ++ GE+T + F+ FC + GI++  +   +PQQ+GVA R  R+I +MAR  + + N+ + +WAEA   AVY LN +P RS  G    E W G  P + HLRVFG  AY     + R K+DD++ A +F+GYD +   Y++Y P   ++ +SR+V FDEE
Sbjct:   39 ISNVYYVPNMKNNILSLGQLLEKGYDIHM---------------------KDHSLS--IRDNKNNLITKVPMSKNRMFLLNIQNDVAKCLKACYKNVSWLWHLRFGHLNFGGLELLSKKDMVRGLPFISHPNQLCEGCLLGKQFRKSFPKKSSSRAQKPLELIHTDICGPIKPSSLGKSNYFLLFIDDFSRKTWVYFLKQKSEAFEVFKKFKAAVEKESGLHIKAMRSDRGGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRKPGISHLRVFGSKAYAHVPDETRSKLDDKSKAFIFIGYDSNSKGYKLYNPDTNNLVISRDVEFDEE 401          
BLAST of mRNA_H-paniculata_contig20030.5149.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS)

HSP 1 Score: 210 bits (535), Expect = 8.850e-57
Identity = 128/387 (33.07%), Postives = 210/387 (54.26%), Query Frame = 1
Query:    1 IVCNVFYVPEASDSILSVKRMVSQGMEAYFGSERRWLYYDGITIPFEHASRKDYLLRTIVGDE--VEVQAAKRTIGKQVKVLRLFSNDCTTPKNNEKRQL-HERIGHV-----RDLPTVARQQGI-RLS--GKLGVCSACEKGKASKQRVKKYREGRTTEPLELVHTEIAGPV-DKSFGGCRFAIIFVNDYSRMRQVYTLRLKSKALWALKQFERDVARENALQIKRLRPNQ*GEYTGKPFRQFCSEIGIKQEFSAA*TPQQDGVAGRTWRSIFEMARVNMITVNMGRRYWAEAARSAVYCLNLAPMRSHNGGILYEKWHGETPKLDHLRVFGCTAYVMFQSQQRCKIDDEA*AGVFLGYDEDRPSYRIYKPKNKSVQLSRNVRFDE 1125
            ++ +V+YVP    +++S+ ++  +G+          +  D       H  ++  L+R+++       V AA       VK  R     C      +   L H+R+GH+     + L       G+ +LS  G  G+C  C +GK +++ + K    R +  L+LVHT+I GP+   S  G R+ I F++DYSR    + L  KS+AL A K+F+    RE  L +  LR ++ GEY    F+ +C E GIK++ +AA TPQQ+G+A R  RSI  MAR  M+ +++ RR+W EA + AV+ LN +P  +       E+W    P ++H+RVFGC AY +   ++R K+D+++   VF+G  ++  +YR+Y P+ K + +SR+VRFDE
Sbjct:  354 LISSVYYVPGLKSNLMSIGQLQQKGLR---------IVIDEDVCEIWHKEQRRLLMRSVMSKNRLFVVLAA-------VKEARDTEEGCFQVTEEKMEDLWHKRLGHLSHSGMQSLVEKKMVNGLPQLSHNGDGGLCDICMRGKQNRENIPKKSSWRASRALQLVHTDICGPIAPTSASGKRYIINFIDDYSRKCWSFLLAEKSEALRAFKEFKVAAEREMGLSLVSLRSDRGGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAYALVPYERRVKLDEKSIQCVFVGVSKESKAYRLYNPETKKIIISRDVRFDE 724          
BLAST of mRNA_H-paniculata_contig20030.5149.1 vs. uniprot
Match: A0A151TGQ2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TGQ2_CAJCA)

HSP 1 Score: 206 bits (525), Expect = 1.280e-55
Identity = 128/385 (33.25%), Postives = 210/385 (54.55%), Query Frame = 1
Query:    4 VCNVFYVPEASDSILSVKRMVSQGMEAYFGSERRWLYYDGITIPFEHASRKDYLLRTIVGDEVEVQAAKRTIGKQVKVLRLFSNDCTTPKNNEKRQL---HERIGHV--RDLPTVARQQGIR----LSGKLGVCSACEKGKASKQRVKKYREGRTTEPLELVHTEIAGPVD-KSFGGCRFAIIFVNDYSRMRQVYTLRLKSKALWALKQFERDVARENALQIKRLRPNQ*GEYTGKPFRQFCSEIGIKQEFSAA*TPQQDGVAGRTWRSIFEMARVNMITVNMGRRYWAEAARSAVYCLNLAPMRSHNGGILYEKWHGETPKLDHLRVFGCTAYVMFQSQQRCKIDDEA*AGVFLGYDEDRPSYRIYKPKNKSVQLSRNVRFDEE 1128
            + NV+YVP    +ILS+ +++ +G             YD I +   + S +D   R I     +V   +     ++ VL + S+     K   K Q    H R GH+  + L  ++++  +R    ++    VC  C  GK  +    K  + R  +PLEL+HT++ GP+  +S G   + ++F++D+SR   VY L+ KS+     K+F+  V +E+ L IK LR ++ GE+T K F+++C + GI+++ +   +PQQ+GVA R  R+I EMAR  + +  + + +WAEA   AVY  N +P RS +G    E W G  P + HLRVFG  A+V    ++R K+DD++   +F+GYD +   Y++Y P ++   +SRNV FDEE
Sbjct:  323 ISNVYYVPSMKSNILSLGQLLEKG-------------YD-IQLKNNNLSIRDNTSRFIA----KVPMTRN----RMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVFDEE 685          
BLAST of mRNA_H-paniculata_contig20030.5149.1 vs. uniprot
Match: A0A151RPT4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RPT4_CAJCA)

HSP 1 Score: 206 bits (525), Expect = 1.890e-55
Identity = 128/385 (33.25%), Postives = 210/385 (54.55%), Query Frame = 1
Query:    4 VCNVFYVPEASDSILSVKRMVSQGMEAYFGSERRWLYYDGITIPFEHASRKDYLLRTIVGDEVEVQAAKRTIGKQVKVLRLFSNDCTTPKNNEKRQL---HERIGHV--RDLPTVARQQGIR----LSGKLGVCSACEKGKASKQRVKKYREGRTTEPLELVHTEIAGPVD-KSFGGCRFAIIFVNDYSRMRQVYTLRLKSKALWALKQFERDVARENALQIKRLRPNQ*GEYTGKPFRQFCSEIGIKQEFSAA*TPQQDGVAGRTWRSIFEMARVNMITVNMGRRYWAEAARSAVYCLNLAPMRSHNGGILYEKWHGETPKLDHLRVFGCTAYVMFQSQQRCKIDDEA*AGVFLGYDEDRPSYRIYKPKNKSVQLSRNVRFDEE 1128
            + NV+YVP    +ILS+ +++ +G             YD I +   + S +D   R I     +V   +     ++ VL + S+     K   K Q    H R GH+  + L  ++++  +R    ++    VC  C  GK  +    K  + R  +PLEL+HT++ GP+  +S G   + ++F++D+SR   VY L+ KS+     K+F+  V +E+ L IK LR ++ GE+T K F+++C + GI+++ +   +PQQ+GVA R  R+I EMAR  + +  + + +WAEA   AVY  N +P RS +G    E W G  P + HLRVFG  A+V    ++R K+DD++   +F+GYD +   Y++Y P ++   +SRNV FDEE
Sbjct:  389 ISNVYYVPSMKSNILSLGQLLEKG-------------YD-IQLKNNNLSIRDNTSRFIA----KVPMTRN----RMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVFDEE 751          
BLAST of mRNA_H-paniculata_contig20030.5149.1 vs. uniprot
Match: UPI000A29CC5E (uncharacterized protein LOC110224828 n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=UPI000A29CC5E)

HSP 1 Score: 204 bits (520), Expect = 4.550e-55
Identity = 127/387 (32.82%), Postives = 204/387 (52.71%), Query Frame = 1
Query:    4 VCNVFYVPEASDSILSVKRMVSQGMEAYFGSERRWLYYDGITIPFEHASRKDYLLRTIVGDEVEVQAAKRTIGKQVKVLRLFSND---CTTPKNNEKRQL-HERIGHVR--DLPTVARQQGIR----LSGKLGVCSACEKGKASKQRVKKYREGRTTEPLELVHTEIAGPVD-KSFGGCRFAIIFVNDYSRMRQVYTLRLKSKALWALKQFERDVARENALQIKRLRPNQ*GEYTGKPFRQFCSEIGIKQEFSAA*TPQQDGVAGRTWRSIFEMARVNMITVNMGRRYWAEAARSAVYCLNLAPMRSHNGGILYEKWHGETPKLDHLRVFGCTAYVMFQSQQRCKIDDEA*AGVFLGYDEDRPSYRIYKPKNKSVQLSRNVRFDEED 1131
            + NV+Y+P    +ILS+ +++ +G             YD I +   + S +D     I          K ++ K    +    ND   C      E+  L H R GH+    L  +++++ +R    ++    VC  C  GK  K    K    R  +PLEL+HT++ GP+  KS G   + ++F++D+SR   VY L+ KS+     K+F+  V +E+ L IK +R ++ GE+T K F ++C + GI+++ +   +PQQ+GVA R  R+I EMAR  + +  + +  WAEA   AVY LN +P +S +G    E W G  P + HLRVFG  A+     ++R K+DD++   +F+GYD +   Y++Y P  K   +SRNV FDEE+
Sbjct:  390 ISNVYYIPSMKTNILSLGQLLEKG-------------YD-IRLKDNNLSIRDQESNLIT---------KVSMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLKLLSKKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSTRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKRFKAHVEKESGLTIKSMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVAYAVYLLNRSPTKSISGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNVVFDEEE 753          
BLAST of mRNA_H-paniculata_contig20030.5149.1 vs. uniprot
Match: UPI001B3556EB (LOW QUALITY PROTEIN: uncharacterized protein LOC100794549 n=1 Tax=Glycine max TaxID=3847 RepID=UPI001B3556EB)

HSP 1 Score: 205 bits (521), Expect = 6.740e-55
Identity = 124/387 (32.04%), Postives = 200/387 (51.68%), Query Frame = 1
Query:    4 VCNVFYVPEASDSILSVKRMVSQGMEAYFGSERRWLYYDGITIPFEHASRKDYLLRTIVGDEVEVQAAKRTIGKQVKVLRLFSND---CTTPKNNEKRQL-HERIGHVR--DLPTVARQQGIRLSGKLG----VCSACEKGKASKQRVKKYREGRTTEPLELVHTEIAGPVD-KSFGGCRFAIIFVNDYSRMRQVYTLRLKSKALWALKQFERDVARENALQIKRLRPNQ*GEYTGKPFRQFCSEIGIKQEFSAA*TPQQDGVAGRTWRSIFEMARVNMITVNMGRRYWAEAARSAVYCLNLAPMRSHNGGILYEKWHGETPKLDHLRVFGCTAYVMFQSQQRCKIDDEA*AGVFLGYDEDRPSYRIYKPKNKSVQLSRNVRFDEED 1131
            + NV+YVP   ++ILS+ +++ +G +                    H       LR    + +    AK  + K    L    ND   C      +   L H R GH+    L  +A+++ +R+   +     +C  C  GK  ++   K    R T+PLEL+HT++ GP+   SFG  ++ ++F++DYSR   VY L+ KS+     K+F+  V +E+ L IK +R ++ GE+T   F ++C + GI++  +   +PQQ+GVA R  R+I  M R  + +  M + +WAEA   AVY  N +P RS +     E W G  P + HL+VFG  AY     ++R K+DD++   VF+GYD     Y++Y P ++ + +SR+V FDEED
Sbjct:  870 ISNVYYVPNMKNNILSLGQLLEKGYDI-------------------HLKEHSLFLRDCRHNLI----AKVPMSKNRMFLLNIQNDVAKCLKACYTDSSWLWHLRFGHLNFDGLERLAKKEMVRVLPSINHPDQLCEGCLIGKQFRKSFPKESTTRATKPLELIHTDVCGPIKPNSFGKNKYFLLFIDDYSRKTWVYFLKEKSEVFENFKKFKALVEKESGLSIKAMRSDRGGEFTSNKFNKYCEDHGIRRPLTMPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLTNRSPTRSVHEKTPQEAWSGRKPGISHLKVFGSIAYTHVPDEKRTKLDDKSEKYVFVGYDSRSKGYKLYNPNSRKIVISRDVEFDEED 1233          
BLAST of mRNA_H-paniculata_contig20030.5149.1 vs. uniprot
Match: C0JJI2_SOYBN (Copia-type polyprotein n=3 Tax=Glycine subgen. Soja TaxID=1462606 RepID=C0JJI2_SOYBN)

HSP 1 Score: 203 bits (517), Expect = 1.590e-54
Identity = 124/386 (32.12%), Postives = 201/386 (52.07%), Query Frame = 1
Query:    1 IVCNVFYVPEASDSILSVKRMVSQGMEAYFGSERRWLYYDGITIPFEHASRKDYLLRTIVGDEVEVQAAKRTIGKQVKVLRLFSNDCTTPKNNEKRQL---HERIGHVR--DLPTVARQQGIRLSGKLG----VCSACEKGKASKQRVKKYREGRTTEPLELVHTEIAGPVDK-SFGGCRFAIIFVNDYSRMRQVYTLRLKSKALWALKQFERDVARENALQIKRLRPNQ*GEYTGKPFRQFCSEIGIKQEFSAA*TPQQDGVAGRTWRSIFEMARVNMITVNMGRRYWAEAARSAVYCLNLAPMRSHNGGILYEKWHGETPKLDHLRVFGCTAYVMFQSQQRCKIDDEA*AGVFLGYDEDRPSYRIYKPKNKSVQLSRNVRFDEE 1128
            ++ +V+YVP+   +ILS+ ++V +G E +      WL      +       K ++ R                  ++  L + +N+    K + K +    H R GH+    L ++  ++ ++   ++     +C AC  GK +++   K    R  EPL+LV+T++ GP++  S G  ++ ++F++DYSR   VY L+ KS+A  A K F+  V +E+   IK LR ++ GE+T K F +FC + GI++  +   +PQQ+GVA R  R+I  M R  +   NM + +WAEA   AVY  N +P ++       E W G  P++DHLRVFG  AY     Q R K+DD +   VF+GYD     Y++Y P N    +SR+V F EE
Sbjct:   81 LITDVYYVPKLKSNILSLGQLVEKGYEIHMKDCCLWLRDKNSNL-----IAKVFMSRN-----------------RMFTLNIKTNEAKCLKASIKDESWCWHMRFGHLNFGALKSLGEEKMVKGMPQINHPNQLCEACLLGKHARRSFPKEANSRAKEPLQLVYTDVCGPINPPSCGNNKYFLLFIDDYSRKTWVYFLKQKSEAFVAFKNFKALVEKESGYVIKALRSDRGGEFTSKEFNEFCEKYGIRRPLTVPRSPQQNGVAERKNRTILNMTRCMLKAKNMPKEFWAEAVACAVYLSNRSPTKNVKDQTPQEAWSGVKPRVDHLRVFGSIAYAHVPDQGRFKLDDRSEKHVFIGYDASSKGYKLYNPNNGKTIVSRDVEFYEE 444          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20030.5149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2H9ZU53_9ASPA1.520e-5933.77Retrovirus-related Pol polyprotein from transposon... [more]
A0A151T355_CAJCA3.360e-5938.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A2Z7BCE9_9LAMI1.560e-5731.25Retrovirus-related Pol polyprotein from transposon... [more]
UPI001F0044644.780e-5732.64DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A6D2IM54_9BRAS8.850e-5733.07Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A151TGQ2_CAJCA1.280e-5533.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A151RPT4_CAJCA1.890e-5533.25Retrovirus-related Pol polyprotein from transposon... [more]
UPI000A29CC5E4.550e-5532.82uncharacterized protein LOC110224828 n=1 Tax=Arabi... [more]
UPI001B3556EB6.740e-5532.04LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]
C0JJI2_SOYBN1.590e-5432.12Copia-type polyprotein n=3 Tax=Glycine subgen. Soj... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20030contigH-paniculata_contig20030:1833..2969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score75.1
Seed ortholog evalue4.2e-11
Seed eggNOG ortholog400682.PAC_15703055
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3ACW4@33154,3BVPH@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size1137
Cds size603
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20030.5149.1prot_H-paniculata_contig20030.5149.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20030 2307..2909 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929512.6407032-UTR-H-paniculata_contig20030:1832..23061622929512.6407032-UTR-H-paniculata_contig20030:1832..2306Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20030 1833..2306 -
1691480893.3117888-UTR-H-paniculata_contig20030:1832..23061691480893.3117888-UTR-H-paniculata_contig20030:1832..2306Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20030 1833..2306 -
1622929512.6729686-UTR-H-paniculata_contig20030:2909..29691622929512.6729686-UTR-H-paniculata_contig20030:2909..2969Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20030 2910..2969 -
1691480893.3285306-UTR-H-paniculata_contig20030:2909..29691691480893.3285306-UTR-H-paniculata_contig20030:2909..2969Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20030 2910..2969 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929512.6555183-CDS-H-paniculata_contig20030:2306..29091622929512.6555183-CDS-H-paniculata_contig20030:2306..2909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20030 2307..2909 -
1691480893.3210378-CDS-H-paniculata_contig20030:2306..29091691480893.3210378-CDS-H-paniculata_contig20030:2306..2909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20030 2307..2909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20030.5149.1

>prot_H-paniculata_contig20030.5149.1 ID=prot_H-paniculata_contig20030.5149.1|Name=mRNA_H-paniculata_contig20030.5149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=201bp
MVSQGMEAYFGSERRWLYYDGITIPFEHASRKDYLLRTIVGDEVEVQAAK
RTIGKQVKVLRLFSNDCTTPKNNEKRQLHERIGHVRDLPTVARQQGIRLS
GKLGVCSACEKGKASKQRVKKYREGRTTEPLELVHTEIAGPVDKSFGGCR
FAIIFVNDYSRMRQVYTLRLKSKALWALKQFERDVARENALQIKRLRPNQ
*
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mRNA from alignment at H-paniculata_contig20030:1833..2969-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20030.5149.1 ID=mRNA_H-paniculata_contig20030.5149.1|Name=mRNA_H-paniculata_contig20030.5149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1137bp|location=Sequence derived from alignment at H-paniculata_contig20030:1833..2969- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGTCTGCAATGTATTTTATGTACCTGAAGCATCAGATAGTATTTTATC GGTTAAGCGGATGGTGAGCCAAGGGATGGAGGCGTATTTTGGTTCGGAAC GTAGATGGTTGTATTACGATGGGATAACGATCCCATTCGAACACGCATCG CGAAAGGACTATTTATTGCGTACGATAGTGGGGGACGAAGTGGAGGTACA GGCCGCAAAACGGACCATCGGAAAACAAGTGAAGGTTCTTCGATTATTCA GCAACGACTGCACCACCCCGAAGAACAATGAGAAGAGGCAACTACACGAG CGAATTGGGCATGTTCGAGACCTTCCCACAGTCGCGCGGCAACAAGGCAT AAGGTTAAGCGGGAAGCTCGGTGTCTGCTCGGCGTGTGAGAAGGGGAAAG CGTCGAAGCAGCGTGTGAAAAAGTATCGAGAAGGGCGGACGACCGAGCCG TTGGAGTTGGTGCACACCGAGATAGCCGGACCGGTGGACAAGTCCTTCGG AGGATGTCGCTTCGCCATAATCTTCGTCAACGACTACAGCAGAATGCGCC AAGTCTATACCTTGCGACTAAAGTCGAAGGCGCTATGGGCCCTGAAGCAA TTCGAGAGAGACGTAGCGAGAGAAAACGCTTTGCAGATTAAGCGCCTTCG GCCGAATCAGTAAGGAGAATATACTGGGAAGCCTTTTAGGCAATTCTGCT CGGAAATTGGCATCAAGCAGGAGTTCTCTGCCGCCTAAACACCGCAACAA GACGGTGTAGCGGGGCGCACCTGGCGCAGCATTTTCGAGATGGCAAGAGT TAACATGATCACCGTCAATATGGGTCGTCGATATTGGGCGGAAGCGGCGC GCTCGGCAGTGTACTGCCTAAATCTCGCCCCGATGCGATCGCATAACGGA GGAATACTGTACGAAAAATGGCACGGCGAGACACCAAAGTTGGACCACCT TCGCGTCTTCGGCTGCACGGCGTATGTTATGTTCCAGTCGCAGCAGAGAT GCAAGATCGACGACGAAGCATGAGCGGGGGTATTCTTGGGGTACGACGAG GATAGACCGAGCTATCGCATATATAAACCGAAAAACAAGAGCGTCCAGTT GAGCAGGAACGTAAGATTTGACGAAGAGGACTTCGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig20030:1833..2969-

>mRNA_H-paniculata_contig20030.5149.1 ID=mRNA_H-paniculata_contig20030.5149.1|Name=mRNA_H-paniculata_contig20030.5149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at H-paniculata_contig20030:1833..2969- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAGCCAAGGGATGGAGGCGTATTTTGGTTCGGAACGTAGATGGTT
GTATTACGATGGGATAACGATCCCATTCGAACACGCATCGCGAAAGGACT
ATTTATTGCGTACGATAGTGGGGGACGAAGTGGAGGTACAGGCCGCAAAA
CGGACCATCGGAAAACAAGTGAAGGTTCTTCGATTATTCAGCAACGACTG
CACCACCCCGAAGAACAATGAGAAGAGGCAACTACACGAGCGAATTGGGC
ATGTTCGAGACCTTCCCACAGTCGCGCGGCAACAAGGCATAAGGTTAAGC
GGGAAGCTCGGTGTCTGCTCGGCGTGTGAGAAGGGGAAAGCGTCGAAGCA
GCGTGTGAAAAAGTATCGAGAAGGGCGGACGACCGAGCCGTTGGAGTTGG
TGCACACCGAGATAGCCGGACCGGTGGACAAGTCCTTCGGAGGATGTCGC
TTCGCCATAATCTTCGTCAACGACTACAGCAGAATGCGCCAAGTCTATAC
CTTGCGACTAAAGTCGAAGGCGCTATGGGCCCTGAAGCAATTCGAGAGAG
ACGTAGCGAGAGAAAACGCTTTGCAGATTAAGCGCCTTCGGCCGAATCAG
TAAATGGTGAGCCAAGGGATGGAGGCGTATTTTGGTTCGGAACGTAGATG
GTTGTATTACGATGGGATAACGATCCCATTCGAACACGCATCGCGAAAGG
ACTATTTATTGCGTACGATAGTGGGGGACGAAGTGGAGGTACAGGCCGCA
AAACGGACCATCGGAAAACAAGTGAAGGTTCTTCGATTATTCAGCAACGA
CTGCACCACCCCGAAGAACAATGAGAAGAGGCAACTACACGAGCGAATTG
GGCATGTTCGAGACCTTCCCACAGTCGCGCGGCAACAAGGCATAAGGTTA
AGCGGGAAGCTCGGTGTCTGCTCGGCGTGTGAGAAGGGGAAAGCGTCGAA
GCAGCGTGTGAAAAAGTATCGAGAAGGGCGGACGACCGAGCCGTTGGAGT
TGGTGCACACCGAGATAGCCGGACCGGTGGACAAGTCCTTCGGAGGATGT
CGCTTCGCCATAATCTTCGTCAACGACTACAGCAGAATGCGCCAAGTCTA
TACCTTGCGACTAAAGTCGAAGGCGCTATGGGCCCTGAAGCAATTCGAGA
GAGACGTAGCGAGAGAAAACGCTTTGCAGATTAAGCGCCTTCGGCCGAAT
CAGTAA
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