mRNA_H-paniculata_contig2.5107.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 133 bits (334), Expect = 2.840e-32 Identity = 98/290 (33.79%), Postives = 135/290 (46.55%), Query Frame = 1
Query: 100 NRTFVPVAGWGCLVLLVGQPGGKSRVAKSNSVAHIPELGHNLISTRRATDTSGKSFVYNANKACVEEEESLVFNVLAP-------SGVYEVE-------AVRSAAGTAKALKTRKSAKRDVMDMHGLLTHASEQITGDTVETAGVVLTD-EWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPK-GLKIGAIRTDNDGEFDGNFHLTLDEYGITHELTPPDTPQYNSVAERRLGL 921
N VP G+G + ++ GG+ V N+ AH+PE HNL+S + + Y+ K + V P Y++E A G AKA + D+ H H E++ T + GV LT C GCS +K + K TD RA R +++LGG MQ ++GG+ Y +II DDC+R+ V F+K K A AA + Y+ADY ++ RTD GEF G F GI E TPP+TP+YN VAER LGL
Sbjct: 24 NNAPVPPLGYGDVTVVFLTEGGRVPVLILNA-AHVPESPHNLLSLSALAE---EGHTYSGQKGGLTLTTRAGGKVWFPRPGKLLTQEGYQIEPKVDIACAATIVPGDAKA-----ATPTDLNSDHNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGL 304
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE) HSP 1 Score: 107 bits (267), Expect = 4.830e-23 Identity = 96/309 (31.07%), Postives = 135/309 (43.69%), Query Frame = 1
Query: 100 NRTFVPVAGWGCLVLLVGQPGGKSRVAKSNSVAHIPELGHNLISTRRATDT----SG-KSFVYNANKACVEEEESLVFNVLAPSGVYEVEAVRSAA-------GTAKALKTRKSAKRDVMDMHGLLTHASEQITGDTVETAGVVLTD-EWGACNGCSTAKAHRFA---------------------VPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPK-GLKIGAIRTDNDGEFDGNFHLTLDEYGITHELTPPDTPQYNSVAERRLGL 921
++ VP +G+G + ++ G V N+ AH+PE +NL+S + SG K + KA E +L G Y+++ A G AKA + + + HG H E + T E GV LTD C GCS K V K T RA + R Y+DLGG M+ ++G Y ++I DD SR+ V F+K K A + ++ DY T + ++ RTD+ GEF G F +GI E TPP TP+YN VAER LGL
Sbjct: 24 DKAPVPFSGYGDVTFVLQTEDGGVPVPILNA-AHVPEAPYNLLSLSSLAEEGHTYSGMKGGITLTTKAGGEVWFPRTGKLLTQRG-YQIKPTLHTACAALIVPGDAKAANPTEPNEYHLA--HG---HDHETLLRITAEQQGVQLTDGPLLPCLGCSVFKGXXXXXXXXXXXXXXXXXXXXXQVKPVQKSTSTRADKKLFRVYLDLGGKMKTRSIGDHWYTLMIRDDFSRWTRVFFLKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAERALGL 325
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A5N6P849_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P849_9ASTR) HSP 1 Score: 108 bits (269), Expect = 1.760e-22 Identity = 86/310 (27.74%), Postives = 145/310 (46.77%), Query Frame = 1
Query: 1 WDLDTSATDYMPSDETALDDYTSALPGIMCEIANRTFVPVAGWGCLVLLVGQPGGKSRVAKSNSVAHIPELGHNLISTRRATDTSGKSFVYNANKACVEEEESLVFNVLAPSG-VYEVEAVRSAAGTAKALKTRKSAKRDVMDMHGLLTHAS----EQITGDTVETAGVVLTDEWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLKIGAIRTDNDGEFDGN-FHLTLDEYGITHELTPPDTPQYNSVAERR 912
W LD A+++M + D + + G + + + V + G G VL + G + + +V +IP L +N+IS + T+ ++ + + +E E LV V S +Y++ A K + D H L H + E+++ + ++ C GC AK R + P + RAT+ E + D+ GP+ +++GG Y ++IVDDC+R+ V F+K K A + ++ + GLK+ +RTD GEF+ + F+ + GI LT P TPQ N V ERR
Sbjct: 352 WYLDNGASNHMTGNIGMFADLNTDVGGNV-RFGDESTVGIKGKGT-VLFDCKTGDQFALT---NVYYIPALKNNVISLGQLTEGGYEAVMKDNYLRLFDETERLVMKVQRSSNRLYKI-----ALTIGKQVCLAMKLDEDAWVWHARLGHTNFGVLEEMSKRKLVEGMPLIKHPAKICEGCLIAKQPRKSFPSVSAWRATKPLELIHADICGPITPSSMGGKRYFLLIVDDCTRYMWVYFLKTKDEACNTFKGFVTEVERQSGLKVKVLRTDRGGEFNSSVFNEFCQKTGIKRHLTAPYTPQQNGVVERR 651
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER) HSP 1 Score: 104 bits (259), Expect = 4.000e-21 Identity = 87/306 (28.43%), Postives = 132/306 (43.14%), Query Frame = 1
Query: 1 WDLDTSATDYMPSDETALDDYTSALPGIMCEIANRTFVPVAGWGCLVLLVGQPGGKSR-VAKSNSVAHIPELGHNLISTRRATDTSGKSFVYNANKACVEEEESLVFNVLAPSGVYEVEAVRSAAGTAKALKTRKSAKRDVMDMHGLLTHASEQITGDTVETAGVV-LTDEWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLKIGAIRTDNDGEF-DGNFHLTLDEYGITHELTPPDTPQYNSVAER 909
W +D+ A+ +M L ++ + + +A+ +P G G +V V G + V + V ++P + NL+S + T+ +G + V VFN +G+Y + A S T +A R S G L + T G+ L E C C T K R +++++ + +VDL GP+ V +LGGS Y++ +VDD SR V F+K K A L YI G K+ +RTDN EF + GI HE T P +P N VAER
Sbjct: 289 WSVDSGASSHMTGCRQILKNFRNDDEKTI-TLADGKTIPTQGVGTVVFEVKNGNGNGKNVLTAKDVLYVPGMADNLLSVSKLTE-NGMDVRFVDEYCNVYFRNQFVFNATKEAGIYRLRAKISRPNTQQASGARVSTAELWHRRMGHLNRETLVRMSRTEADRGMPKLKQEDFECVPCITGKHSRNPFNPSQERQSSSLLDLVHVDLCGPLPVCSLGGSRYILAVVDDHSRRITVRFLKSKDEAAEILTEYINQVERQTGSKVKRVRTDNGTEFVNRGLQHVFKRKGIVHERTAPFSPPQNGVAER 592
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE) HSP 1 Score: 102 bits (255), Expect = 1.180e-20 Identity = 57/129 (44.19%), Postives = 76/129 (58.91%), Query Frame = 1
Query: 556 VPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGL--KIGAIRTDNDGEF-----DGNFHLTLDEYGITHELTPPDTPQYNSVAERRLGL 921
V K T RA + R Y+DLGG M+ ++GG+ Y +II DD SR+ V F+K K GA + + AD+ T KG+ ++ RTD GEF +G F +GI E TPP+TP+YN VAER LGL
Sbjct: 9 VQKSTSTRAVKMLSRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSGAAVGFEKFPADHRT-KGVPREVYIARTDGGGEFQGQFAEGQFAEVCRRHGIKQEFTPPNTPKYNGVAERALGL 136
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A2X0MB77_9BASI (BQ5605_C007g04454 protein n=2 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0MB77_9BASI) HSP 1 Score: 102 bits (253), Expect = 2.350e-20 Identity = 86/316 (27.22%), Postives = 132/316 (41.77%), Query Frame = 1
Query: 7 LDTSATDYMPSDETALDDYTSALPGIMCEIANRTFVPVAGWGCLVLLVGQPGGKSRVAKSNSVAHIPELGHNLISTRRATDTSGKSFVYNANKACVEEEESLVFNVLAPSGVYEVEA--------VRSAAGTAKALKTRKSAKRDVMDMHGLLTHASEQITGDTVETAGV------VLTDEWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLKIGAIRTDNDGEFDGN-FHLTLDEYGITHELTPPDTPQYNSVAER 909
LD+ AT ++ +D + P + I + G G ++ + + N +P NL S RA D G KA V +++ +G+Y ++A V A +AL + +HG H + + T V V ++E C+ C K P R+ + ER ++DL +LGG+ Y ++IVDD SR+ V + K AA +S++A K+ A+R+DN GEF N F L+E GIT +L+ PDTPQ N VAER
Sbjct: 299 LDSGATHHIVNDRACFTSFRKCKPAPLEGITGEVVNSIEGVGSAIVRSFD----GSIGQLNDALFVPTAPVNLFSASRA-DIGGYDIRLTQAKATVSIADTVCHTGKLKNGLYHMQASLVDVAALVHQAGAFPRALVAVPMSV-----LHGRFAHLHPRALRQLISTEAVSGVSMEVDSNEDLKCDSCQAGKITHHPFPAVASNRSAQPLERVHMDLLAFDGAVSLGGARYALVIVDDHSRYLWVIPMSHKSDTFAAFKSWLAKVERSTSRKVLAVRSDNGGEFMSNKFSRFLEEQGITRQLSIPDTPQQNGVAER 604
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 2.920e-19 Identity = 48/100 (48.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query: 625 MQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPK-GLKIGAIRTDNDGEFDGNFHLTLDEYGITHELTPPDTPQYNSVAERRLGL 921
MQ ++GG+ Y +II DDC+R+ V F+K K A AA + Y+ADY ++ RTD GEF G F YGI E TPP+TP+YN VAER LGL
Sbjct: 1 MQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGL 100
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A2X0MHZ8_9BASI (BQ5605_C030g10749 protein n=2 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0MHZ8_9BASI) HSP 1 Score: 95.9 bits (237), Expect = 3.210e-18 Identity = 81/313 (25.88%), Postives = 134/313 (42.81%), Query Frame = 1
Query: 7 LDTSATDYMPSDETALDDYTSALPGIMCEIANRTFVPVAGWGCLVLLVGQPGGKSRVAKSNSVAHIPELGHNLISTRRATDTSGKSFVYNANKACVEEEESLVFNVLAPSGVYEVEAVRSAAGTAKALKTRKSAKR-----DVMDMHGLLTHASEQITGDTVETAGVVLTDEWGA------CNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLKIGAIRTDNDGEFDGN-FHLTLDEYGITHELTPPDTPQYNSVAER 909
LD+ AT ++ +D ++ P + I + + G G V+ + + + +P +L S RA + +G + KA V + S+ +G+Y + A S ++ ++ R V MHG H + + T V+ + A C+ C K P R+ + +R ++DL +LGG+ Y ++IVDD +R+ + K AA +S++A K+ A+R+DN GEF N F L+E GIT +L+ PDTPQ N VAER
Sbjct: 506 LDSGATHHIVNDRACFTNFRKCKPAPLEGITSEAVNSIEGVGSAVVRSFD----GSIGQLHHALFVPSAPVSLFSASRA-NAAGYDINLSRGKATVSVDGSICHTGEITNGLYHMHA--SLVDVTTLIEQPGASPRAFTAVPVSIMHGRFAHLHPRALRQLISTEAVLGVNMEVALNADLKCDTCQAGKITHHPFPTVASNRSAQPLDRVHMDLLAFDGAVSLGGAKYTLVIVDDYTRYLWAIPMSHKSDTFAAFKSWLAKVERSSSRKLLAVRSDNGGEFLSNEFSSFLEEQGITRQLSIPDTPQQNGVAER 811
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A8J5ESC8_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5ESC8_ZINOF) HSP 1 Score: 95.5 bits (236), Expect = 3.680e-18 Identity = 55/139 (39.57%), Postives = 72/139 (51.80%), Query Frame = 1
Query: 502 DEWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLKIGAIRTDNDGEFDGNFHLTL-DEYGITHELTPPDTPQYNSVAERRL 915
D G C GC K+HR T R T ER + DL GP + T+ +Y+++ VDD SRF V F+K K + + G KI +RTDN GEF N L+ + GI EL+ PDTPQ N VAER++
Sbjct: 381 DNEGVCEGCQFGKSHRLPFENSTS-RCTTPLERIHSDLMGPTKTTSYSEGNYMLLFVDDYSRFTWVYFVKHKSETFSIFLDFKKIVEGELGRKIKTLRTDNGGEFCSNEFLSFCRDNGIKRELSCPDTPQQNGVAERKI 518
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A8J5GTW8_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GTW8_ZINOF) HSP 1 Score: 95.5 bits (236), Expect = 4.060e-18 Identity = 80/256 (31.25%), Postives = 116/256 (45.31%), Query Frame = 1
Query: 187 NSVAHIPELGHNLISTRRATDTSG--------KSFVYNAN--KACVEEEESLVFN--VLAPSGVYEVEAVRSAAGTAKALKTRKSAKRDVMDMHGLLTHASEQITGDTVETAGVVLTDEWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLKIGAIRTDNDGEFDGNFHLTL-DEYGITHELTPPDTPQYNSVAERRL 915
NSV H+P + NL S A D F+ N KA V + V + VL+ S Y +E +RS +L + ++ M ++ + D+++ D G C GC K+HR T + T ER + DL GP + T+ +Y+++ VDD SRF V F+K K + + G KI +RTDN GEF N L+ + GI EL+ PDTPQ N VAER++
Sbjct: 589 NSVYHVPGIQKNLFSVANAVDAGNFVLFGPRDVKFLRNVKEIKADVVHTGTRVKDLFVLSTSNSY-IEKMRS--NDTSSLWHARLGHINMTKMRAIIQKKLVEGLPDSMKI------DNEGVCEGCQFGKSHRLPFQNSTSRCMT-PLERIHSDLMGPTKTTSYSEGNYMLLFVDDYSRFTWVYFVKHKSETFSIFLDFKKIVEGELGRKIKTLRTDNGGEFCSNEFLSFCRDNGIKRELSCPDTPQQNGVAERKI 834 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2.5107.1 >prot_H-paniculata_contig2.5107.1 ID=prot_H-paniculata_contig2.5107.1|Name=mRNA_H-paniculata_contig2.5107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=297bp MPSDETALDDYTSALPGIMCEIANRTFVPVAGWGCLVLLVGQPGGKSRVAback to top mRNA from alignment at H-paniculata_contig2:6447..7367- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2.5107.1 ID=mRNA_H-paniculata_contig2.5107.1|Name=mRNA_H-paniculata_contig2.5107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=921bp|location=Sequence derived from alignment at H-paniculata_contig2:6447..7367- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2:6447..7367- >mRNA_H-paniculata_contig2.5107.1 ID=mRNA_H-paniculata_contig2.5107.1|Name=mRNA_H-paniculata_contig2.5107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1782bp|location=Sequence derived from alignment at H-paniculata_contig2:6447..7367- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |