mRNA_H-paniculata_contig2.5107.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2.5107.1
Unique NamemRNA_H-paniculata_contig2.5107.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.840e-32
Identity = 98/290 (33.79%), Postives = 135/290 (46.55%), Query Frame = 1
Query:  100 NRTFVPVAGWGCLVLLVGQPGGKSRVAKSNSVAHIPELGHNLISTRRATDTSGKSFVYNANKACVEEEESLVFNVLAP-------SGVYEVE-------AVRSAAGTAKALKTRKSAKRDVMDMHGLLTHASEQITGDTVETAGVVLTD-EWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPK-GLKIGAIRTDNDGEFDGNFHLTLDEYGITHELTPPDTPQYNSVAERRLGL 921
            N   VP  G+G + ++    GG+  V   N+ AH+PE  HNL+S     +   +   Y+  K  +         V  P          Y++E       A     G AKA     +   D+   H    H  E++   T +  GV LT      C GCS +K     + K TD RA     R +++LGG MQ  ++GG+ Y +II DDC+R+  V F+K K  A AA + Y+ADY       ++   RTD  GEF G F       GI  E TPP+TP+YN VAER LGL
Sbjct:   24 NNAPVPPLGYGDVTVVFLTEGGRVPVLILNA-AHVPESPHNLLSLSALAE---EGHTYSGQKGGLTLTTRAGGKVWFPRPGKLLTQEGYQIEPKVDIACAATIVPGDAKA-----ATPTDLNSDHNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGL 304          
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 4.830e-23
Identity = 96/309 (31.07%), Postives = 135/309 (43.69%), Query Frame = 1
Query:  100 NRTFVPVAGWGCLVLLVGQPGGKSRVAKSNSVAHIPELGHNLISTRRATDT----SG-KSFVYNANKACVEEEESLVFNVLAPSGVYEVEAVRSAA-------GTAKALKTRKSAKRDVMDMHGLLTHASEQITGDTVETAGVVLTD-EWGACNGCSTAKAHRFA---------------------VPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPK-GLKIGAIRTDNDGEFDGNFHLTLDEYGITHELTPPDTPQYNSVAERRLGL 921
            ++  VP +G+G +  ++    G   V   N+ AH+PE  +NL+S     +     SG K  +    KA  E        +L   G Y+++     A       G AKA    +  +  +   HG   H  E +   T E  GV LTD     C GCS  K                          V K T  RA +   R Y+DLGG M+  ++G   Y ++I DD SR+  V F+K K  A    + ++ DY T +   ++   RTD+ GEF G F      +GI  E TPP TP+YN VAER LGL
Sbjct:   24 DKAPVPFSGYGDVTFVLQTEDGGVPVPILNA-AHVPEAPYNLLSLSSLAEEGHTYSGMKGGITLTTKAGGEVWFPRTGKLLTQRG-YQIKPTLHTACAALIVPGDAKAANPTEPNEYHLA--HG---HDHETLLRITAEQQGVQLTDGPLLPCLGCSVFKGXXXXXXXXXXXXXXXXXXXXXQVKPVQKSTSTRADKKLFRVYLDLGGKMKTRSIGDHWYTLMIRDDFSRWTRVFFLKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAERALGL 325          
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A5N6P849_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P849_9ASTR)

HSP 1 Score: 108 bits (269), Expect = 1.760e-22
Identity = 86/310 (27.74%), Postives = 145/310 (46.77%), Query Frame = 1
Query:    1 WDLDTSATDYMPSDETALDDYTSALPGIMCEIANRTFVPVAGWGCLVLLVGQPGGKSRVAKSNSVAHIPELGHNLISTRRATDTSGKSFVYNANKACVEEEESLVFNVLAPSG-VYEVEAVRSAAGTAKALKTRKSAKRDVMDMHGLLTHAS----EQITGDTVETAGVVLTDEWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLKIGAIRTDNDGEFDGN-FHLTLDEYGITHELTPPDTPQYNSVAERR 912
            W LD  A+++M  +     D  + + G +    + + V + G G  VL   + G +  +    +V +IP L +N+IS  + T+   ++ + +      +E E LV  V   S  +Y++     A    K +        D    H  L H +    E+++   +     ++      C GC  AK  R + P  +  RAT+  E  + D+ GP+  +++GG  Y ++IVDDC+R+  V F+K K  A    + ++ +     GLK+  +RTD  GEF+ + F+    + GI   LT P TPQ N V ERR
Sbjct:  352 WYLDNGASNHMTGNIGMFADLNTDVGGNV-RFGDESTVGIKGKGT-VLFDCKTGDQFALT---NVYYIPALKNNVISLGQLTEGGYEAVMKDNYLRLFDETERLVMKVQRSSNRLYKI-----ALTIGKQVCLAMKLDEDAWVWHARLGHTNFGVLEEMSKRKLVEGMPLIKHPAKICEGCLIAKQPRKSFPSVSAWRATKPLELIHADICGPITPSSMGGKRYFLLIVDDCTRYMWVYFLKTKDEACNTFKGFVTEVERQSGLKVKVLRTDRGGEFNSSVFNEFCQKTGIKRHLTAPYTPQQNGVVERR 651          
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 104 bits (259), Expect = 4.000e-21
Identity = 87/306 (28.43%), Postives = 132/306 (43.14%), Query Frame = 1
Query:    1 WDLDTSATDYMPSDETALDDYTSALPGIMCEIANRTFVPVAGWGCLVLLVGQPGGKSR-VAKSNSVAHIPELGHNLISTRRATDTSGKSFVYNANKACVEEEESLVFNVLAPSGVYEVEAVRSAAGTAKALKTRKSAKRDVMDMHGLLTHASEQITGDTVETAGVV-LTDEWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLKIGAIRTDNDGEF-DGNFHLTLDEYGITHELTPPDTPQYNSVAER 909
            W +D+ A+ +M      L ++ +     +  +A+   +P  G G +V  V    G  + V  +  V ++P +  NL+S  + T+ +G    +      V      VFN    +G+Y + A  S   T +A   R S         G L   +      T    G+  L  E   C  C T K  R       +++++   +  +VDL GP+ V +LGGS Y++ +VDD SR   V F+K K  A   L  YI       G K+  +RTDN  EF +          GI HE T P +P  N VAER
Sbjct:  289 WSVDSGASSHMTGCRQILKNFRNDDEKTI-TLADGKTIPTQGVGTVVFEVKNGNGNGKNVLTAKDVLYVPGMADNLLSVSKLTE-NGMDVRFVDEYCNVYFRNQFVFNATKEAGIYRLRAKISRPNTQQASGARVSTAELWHRRMGHLNRETLVRMSRTEADRGMPKLKQEDFECVPCITGKHSRNPFNPSQERQSSSLLDLVHVDLCGPLPVCSLGGSRYILAVVDDHSRRITVRFLKSKDEAAEILTEYINQVERQTGSKVKRVRTDNGTEFVNRGLQHVFKRKGIVHERTAPFSPPQNGVAER 592          
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.180e-20
Identity = 57/129 (44.19%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  556 VPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGL--KIGAIRTDNDGEF-----DGNFHLTLDEYGITHELTPPDTPQYNSVAERRLGL 921
            V K T  RA +   R Y+DLGG M+  ++GG+ Y +II DD SR+  V F+K K GA    + + AD+ T KG+  ++   RTD  GEF     +G F      +GI  E TPP+TP+YN VAER LGL
Sbjct:    9 VQKSTSTRAVKMLSRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSGAAVGFEKFPADHRT-KGVPREVYIARTDGGGEFQGQFAEGQFAEVCRRHGIKQEFTPPNTPKYNGVAERALGL 136          
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A2X0MB77_9BASI (BQ5605_C007g04454 protein n=2 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0MB77_9BASI)

HSP 1 Score: 102 bits (253), Expect = 2.350e-20
Identity = 86/316 (27.22%), Postives = 132/316 (41.77%), Query Frame = 1
Query:    7 LDTSATDYMPSDETALDDYTSALPGIMCEIANRTFVPVAGWGCLVLLVGQPGGKSRVAKSNSVAHIPELGHNLISTRRATDTSGKSFVYNANKACVEEEESLVFNVLAPSGVYEVEA--------VRSAAGTAKALKTRKSAKRDVMDMHGLLTHASEQITGDTVETAGV------VLTDEWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLKIGAIRTDNDGEFDGN-FHLTLDEYGITHELTPPDTPQYNSVAER 909
            LD+ AT ++ +D      +    P  +  I       + G G  ++          + + N    +P    NL S  RA D  G        KA V   +++       +G+Y ++A        V  A    +AL     +      +HG   H   +     + T  V      V ++E   C+ C   K      P     R+ +  ER ++DL       +LGG+ Y ++IVDD SR+  V  +  K    AA +S++A        K+ A+R+DN GEF  N F   L+E GIT +L+ PDTPQ N VAER
Sbjct:  299 LDSGATHHIVNDRACFTSFRKCKPAPLEGITGEVVNSIEGVGSAIVRSFD----GSIGQLNDALFVPTAPVNLFSASRA-DIGGYDIRLTQAKATVSIADTVCHTGKLKNGLYHMQASLVDVAALVHQAGAFPRALVAVPMSV-----LHGRFAHLHPRALRQLISTEAVSGVSMEVDSNEDLKCDSCQAGKITHHPFPAVASNRSAQPLERVHMDLLAFDGAVSLGGARYALVIVDDHSRYLWVIPMSHKSDTFAAFKSWLAKVERSTSRKVLAVRSDNGGEFMSNKFSRFLEEQGITRQLSIPDTPQQNGVAER 604          
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.920e-19
Identity = 48/100 (48.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:  625 MQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPK-GLKIGAIRTDNDGEFDGNFHLTLDEYGITHELTPPDTPQYNSVAERRLGL 921
            MQ  ++GG+ Y +II DDC+R+  V F+K K  A AA + Y+ADY       ++   RTD  GEF G F      YGI  E TPP+TP+YN VAER LGL
Sbjct:    1 MQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGL 100          
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A2X0MHZ8_9BASI (BQ5605_C030g10749 protein n=2 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0MHZ8_9BASI)

HSP 1 Score: 95.9 bits (237), Expect = 3.210e-18
Identity = 81/313 (25.88%), Postives = 134/313 (42.81%), Query Frame = 1
Query:    7 LDTSATDYMPSDETALDDYTSALPGIMCEIANRTFVPVAGWGCLVLLVGQPGGKSRVAKSNSVAHIPELGHNLISTRRATDTSGKSFVYNANKACVEEEESLVFNVLAPSGVYEVEAVRSAAGTAKALKTRKSAKR-----DVMDMHGLLTHASEQITGDTVETAGVVLTDEWGA------CNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLKIGAIRTDNDGEFDGN-FHLTLDEYGITHELTPPDTPQYNSVAER 909
            LD+ AT ++ +D     ++    P  +  I +     + G G  V+          + + +    +P    +L S  RA + +G     +  KA V  + S+       +G+Y + A  S       ++   ++ R      V  MHG   H   +     + T  V+  +   A      C+ C   K      P     R+ +  +R ++DL       +LGG+ Y ++IVDD +R+     +  K    AA +S++A        K+ A+R+DN GEF  N F   L+E GIT +L+ PDTPQ N VAER
Sbjct:  506 LDSGATHHIVNDRACFTNFRKCKPAPLEGITSEAVNSIEGVGSAVVRSFD----GSIGQLHHALFVPSAPVSLFSASRA-NAAGYDINLSRGKATVSVDGSICHTGEITNGLYHMHA--SLVDVTTLIEQPGASPRAFTAVPVSIMHGRFAHLHPRALRQLISTEAVLGVNMEVALNADLKCDTCQAGKITHHPFPTVASNRSAQPLDRVHMDLLAFDGAVSLGGAKYTLVIVDDYTRYLWAIPMSHKSDTFAAFKSWLAKVERSSSRKLLAVRSDNGGEFLSNEFSSFLEEQGITRQLSIPDTPQQNGVAER 811          
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A8J5ESC8_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5ESC8_ZINOF)

HSP 1 Score: 95.5 bits (236), Expect = 3.680e-18
Identity = 55/139 (39.57%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  502 DEWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLKIGAIRTDNDGEFDGNFHLTL-DEYGITHELTPPDTPQYNSVAERRL 915
            D  G C GC   K+HR      T  R T   ER + DL GP + T+    +Y+++ VDD SRF  V F+K K    +    +        G KI  +RTDN GEF  N  L+   + GI  EL+ PDTPQ N VAER++
Sbjct:  381 DNEGVCEGCQFGKSHRLPFENSTS-RCTTPLERIHSDLMGPTKTTSYSEGNYMLLFVDDYSRFTWVYFVKHKSETFSIFLDFKKIVEGELGRKIKTLRTDNGGEFCSNEFLSFCRDNGIKRELSCPDTPQQNGVAERKI 518          
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A8J5GTW8_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GTW8_ZINOF)

HSP 1 Score: 95.5 bits (236), Expect = 4.060e-18
Identity = 80/256 (31.25%), Postives = 116/256 (45.31%), Query Frame = 1
Query:  187 NSVAHIPELGHNLISTRRATDTSG--------KSFVYNAN--KACVEEEESLVFN--VLAPSGVYEVEAVRSAAGTAKALKTRKSAKRDVMDMHGLLTHASEQITGDTVETAGVVLTDEWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLKIGAIRTDNDGEFDGNFHLTL-DEYGITHELTPPDTPQYNSVAERRL 915
            NSV H+P +  NL S   A D             F+ N    KA V    + V +  VL+ S  Y +E +RS      +L   +    ++  M  ++     +   D+++       D  G C GC   K+HR      T +  T   ER + DL GP + T+    +Y+++ VDD SRF  V F+K K    +    +        G KI  +RTDN GEF  N  L+   + GI  EL+ PDTPQ N VAER++
Sbjct:  589 NSVYHVPGIQKNLFSVANAVDAGNFVLFGPRDVKFLRNVKEIKADVVHTGTRVKDLFVLSTSNSY-IEKMRS--NDTSSLWHARLGHINMTKMRAIIQKKLVEGLPDSMKI------DNEGVCEGCQFGKSHRLPFQNSTSRCMT-PLERIHSDLMGPTKTTSYSEGNYMLLFVDDYSRFTWVYFVKHKSETFSIFLDFKKIVEGELGRKIKTLRTDNGGEFCSNEFLSFCRDNGIKRELSCPDTPQQNGVAERKI 834          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE2.840e-3233.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGJ8_9PHAE4.830e-2331.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6P849_9ASTR1.760e-2227.74Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A293MM55_ORNER4.000e-2128.43Reverse transcriptase, gag, polyprotein (Fragment)... [more]
A0A6H5K293_9PHAE1.180e-2044.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A2X0MB77_9BASI2.350e-2027.22BQ5605_C007g04454 protein n=2 Tax=Microbotryum sil... [more]
A0A6H5KKB4_9PHAE2.920e-1948.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A2X0MHZ8_9BASI3.210e-1825.88BQ5605_C030g10749 protein n=2 Tax=Microbotryum sil... [more]
A0A8J5ESC8_ZINOF3.680e-1839.57Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A8J5GTW8_ZINOF4.060e-1831.25Uncharacterized protein n=1 Tax=Zingiber officinal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2contigH-paniculata_contig2:6447..7367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue6.6e-21
Seed eggNOG ortholog164328.Phyra85520
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size921
Cds size891
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929505.8659554-CDS-H-paniculata_contig2:6446..73371622929505.8659554-CDS-H-paniculata_contig2:6446..7337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2 6447..7337 -
1691480890.241206-CDS-H-paniculata_contig2:6446..73371691480890.241206-CDS-H-paniculata_contig2:6446..7337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2 6447..7337 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929505.888472-UTR-H-paniculata_contig2:7337..73671622929505.888472-UTR-H-paniculata_contig2:7337..7367Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2 7338..7367 -
1691480890.2501693-UTR-H-paniculata_contig2:7337..73671691480890.2501693-UTR-H-paniculata_contig2:7337..7367Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2 7338..7367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2.5107.1prot_H-paniculata_contig2.5107.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2 6447..7337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2.5107.1

>prot_H-paniculata_contig2.5107.1 ID=prot_H-paniculata_contig2.5107.1|Name=mRNA_H-paniculata_contig2.5107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=297bp
MPSDETALDDYTSALPGIMCEIANRTFVPVAGWGCLVLLVGQPGGKSRVA
KSNSVAHIPELGHNLISTRRATDTSGKSFVYNANKACVEEEESLVFNVLA
PSGVYEVEAVRSAAGTAKALKTRKSAKRDVMDMHGLLTHASEQITGDTVE
TAGVVLTDEWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQ
VTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLK
IGAIRTDNDGEFDGNFHLTLDEYGITHELTPPDTPQYNSVAERRLGL
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mRNA from alignment at H-paniculata_contig2:6447..7367-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2.5107.1 ID=mRNA_H-paniculata_contig2.5107.1|Name=mRNA_H-paniculata_contig2.5107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=921bp|location=Sequence derived from alignment at H-paniculata_contig2:6447..7367- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGACTTAGACACCAGTGCGACGGACTACATGCCGTCGGATGAGACTGC GCTCGATGATTACACTTCAGCCCTGCCGGGGATCATGTGTGAAATCGCCA ACAGGACATTCGTGCCGGTAGCAGGGTGGGGGTGCCTTGTGCTTCTGGTA GGTCAACCGGGGGGTAAATCGCGGGTAGCAAAGTCAAACAGCGTTGCCCA CATACCCGAGCTCGGGCACAATTTGATCTCCACACGCCGAGCAACAGATA CATCGGGCAAATCGTTCGTATACAATGCCAACAAAGCATGCGTCGAGGAG GAGGAGAGCCTTGTCTTCAACGTGTTAGCACCTTCAGGAGTGTATGAGGT TGAGGCCGTTCGAAGCGCTGCAGGAACAGCAAAAGCTCTGAAGACGAGAA AATCTGCGAAGCGCGACGTCATGGACATGCACGGACTGCTTACGCATGCA AGCGAGCAGATCACAGGGGATACGGTGGAAACGGCCGGCGTCGTGTTGAC GGATGAGTGGGGGGCCTGCAACGGATGCTCCACTGCCAAGGCTCACCGAT TCGCCGTGCCGAAAAAGACCGACAAGCGAGCCACGCGGGCAGCGGAGCGC TTCTACGTCGACCTGGGCGGACCCATGCAAGTAACCAACTTGGGCGGCAG CTCGTATGTGATGATCATTGTCGACGACTGCTCGCGGTTCCAGGCAGTCA CGTTCATCAAGAAGAAGAGGGGCGCCATTGCAGCTCTCCAGAGCTACATC GCTGACTACATCACGCCGAAGGGACTCAAGATTGGCGCCATTCGCACGGA CAACGACGGGGAGTTCGATGGCAATTTTCACCTCACGCTGGACGAGTACG GTATCACTCACGAGCTCACCCCCCCGGACACACCGCAGTACAATAGCGTT GCAGAAAGGCGGCTGGGTCTA
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Coding sequence (CDS) from alignment at H-paniculata_contig2:6447..7367-

>mRNA_H-paniculata_contig2.5107.1 ID=mRNA_H-paniculata_contig2.5107.1|Name=mRNA_H-paniculata_contig2.5107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1782bp|location=Sequence derived from alignment at H-paniculata_contig2:6447..7367- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGTCGGATGAGACTGCGCTCGATGATTACACTTCAGCCCTGCCGGG
GATCATGTGTGAAATCGCCAACAGGACATTCGTGCCGGTAGCAGGGTGGG
GGTGCCTTGTGCTTCTGGTAGGTCAACCGGGGGGTAAATCGCGGGTAGCA
AAGTCAAACAGCGTTGCCCACATACCCGAGCTCGGGCACAATTTGATCTC
CACACGCCGAGCAACAGATACATCGGGCAAATCGTTCGTATACAATGCCA
ACAAAGCATGCGTCGAGGAGGAGGAGAGCCTTGTCTTCAACGTGTTAGCA
CCTTCAGGAGTGTATGAGGTTGAGGCCGTTCGAAGCGCTGCAGGAACAGC
AAAAGCTCTGAAGACGAGAAAATCTGCGAAGCGCGACGTCATGGACATGC
ACGGACTGCTTACGCATGCAAGCGAGCAGATCACAGGGGATACGGTGGAA
ACGGCCGGCGTCGTGTTGACGGATGAGTGGGGGGCCTGCAACGGATGCTC
CACTGCCAAGGCTCACCGATTCGCCGTGCCGAAAAAGACCGACAAGCGAG
CCACGCGGGCAGCGGAGCGCTTCTACGTCGACCTGGGCGGACCCATGCAA
GTAACCAACTTGGGCGGCAGCTCGTATGTGATGATCATTGTCGACGACTG
CTCGCGGTTCCAGGCAGTCACGTTCATCAAGAAGAAGAGGGGCGCCATTG
CAGCTCTCCAGAGCTACATCGCTGACTACATCACGCCGAAGGGACTCAAG
ATTGGCGCCATTCGCACGGACAACGACGGGGAGTTCGATGGCAATTTTCA
CCTCACGCTGGACGAGTACGGTATCACTCACGAGCTCACCCCCCCGGACA
CACCGCAGTACAATAGCGTTGCAGAAAGGCGGCTGGGTCTAATGCCGTCG
GATGAGACTGCGCTCGATGATTACACTTCAGCCCTGCCGGGGATCATGTG
TGAAATCGCCAACAGGACATTCGTGCCGGTAGCAGGGTGGGGGTGCCTTG
TGCTTCTGGTAGGTCAACCGGGGGGTAAATCGCGGGTAGCAAAGTCAAAC
AGCGTTGCCCACATACCCGAGCTCGGGCACAATTTGATCTCCACACGCCG
AGCAACAGATACATCGGGCAAATCGTTCGTATACAATGCCAACAAAGCAT
GCGTCGAGGAGGAGGAGAGCCTTGTCTTCAACGTGTTAGCACCTTCAGGA
GTGTATGAGGTTGAGGCCGTTCGAAGCGCTGCAGGAACAGCAAAAGCTCT
GAAGACGAGAAAATCTGCGAAGCGCGACGTCATGGACATGCACGGACTGC
TTACGCATGCAAGCGAGCAGATCACAGGGGATACGGTGGAAACGGCCGGC
GTCGTGTTGACGGATGAGTGGGGGGCCTGCAACGGATGCTCCACTGCCAA
GGCTCACCGATTCGCCGTGCCGAAAAAGACCGACAAGCGAGCCACGCGGG
CAGCGGAGCGCTTCTACGTCGACCTGGGCGGACCCATGCAAGTAACCAAC
TTGGGCGGCAGCTCGTATGTGATGATCATTGTCGACGACTGCTCGCGGTT
CCAGGCAGTCACGTTCATCAAGAAGAAGAGGGGCGCCATTGCAGCTCTCC
AGAGCTACATCGCTGACTACATCACGCCGAAGGGACTCAAGATTGGCGCC
ATTCGCACGGACAACGACGGGGAGTTCGATGGCAATTTTCACCTCACGCT
GGACGAGTACGGTATCACTCACGAGCTCACCCCCCCGGACACACCGCAGT
ACAATAGCGTTGCAGAAAGGCGGCTGGGTCTA
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