prot_H-paniculata_contig2.5107.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2.5107.1
Unique Nameprot_H-paniculata_contig2.5107.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length297
Homology
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.200e-32
Identity = 98/290 (33.79%), Postives = 135/290 (46.55%), Query Frame = 0
Query:   24 NRTFVPVAGWGCLVLLVGQPGGKSRVAKSNSVAHIPELGHNLISTRRATDTSGKSFVYNANKACVEEEESLVFNVLAP-------SGVYEVE-------AVRSAAGTAKALKTRKSAKRDVMDMHGLLTHASEQITGDTVETAGVVLTD-EWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPK-GLKIGAIRTDNDGEFDGNFHLTLDEYGITHELTPPDTPQYNSVAERRLGL 297
            N   VP  G+G + ++    GG+  V   N+ AH+PE  HNL+S     +   +   Y+  K  +         V  P          Y++E       A     G AKA     +   D+   H    H  E++   T +  GV LT      C GCS +K     + K TD RA     R +++LGG MQ  ++GG+ Y +II DDC+R+  V F+K K  A AA + Y+ADY       ++   RTD  GEF G F       GI  E TPP+TP+YN VAER LGL
Sbjct:   24 NNAPVPPLGYGDVTVVFLTEGGRVPVLILNA-AHVPESPHNLLSLSALAE---EGHTYSGQKGGLTLTTRAGGKVWFPRPGKLLTQEGYQIEPKVDIACAATIVPGDAKA-----ATPTDLNSDHNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGL 304          
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.900e-23
Identity = 96/309 (31.07%), Postives = 135/309 (43.69%), Query Frame = 0
Query:   24 NRTFVPVAGWGCLVLLVGQPGGKSRVAKSNSVAHIPELGHNLISTRRATDT----SG-KSFVYNANKACVEEEESLVFNVLAPSGVYEVEAVRSAA-------GTAKALKTRKSAKRDVMDMHGLLTHASEQITGDTVETAGVVLTD-EWGACNGCSTAKAHRFA---------------------VPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPK-GLKIGAIRTDNDGEFDGNFHLTLDEYGITHELTPPDTPQYNSVAERRLGL 297
            ++  VP +G+G +  ++    G   V   N+ AH+PE  +NL+S     +     SG K  +    KA  E        +L   G Y+++     A       G AKA    +  +  +   HG   H  E +   T E  GV LTD     C GCS  K                          V K T  RA +   R Y+DLGG M+  ++G   Y ++I DD SR+  V F+K K  A    + ++ DY T +   ++   RTD+ GEF G F      +GI  E TPP TP+YN VAER LGL
Sbjct:   24 DKAPVPFSGYGDVTFVLQTEDGGVPVPILNA-AHVPEAPYNLLSLSSLAEEGHTYSGMKGGITLTTKAGGEVWFPRTGKLLTQRG-YQIKPTLHTACAALIVPGDAKAANPTEPNEYHLA--HG---HDHETLLRITAEQQGVQLTDGPLLPCLGCSVFKGXXXXXXXXXXXXXXXXXXXXXQVKPVQKSTSTRADKKLFRVYLDLGGKMKTRSIGDHWYTLMIRDDFSRWTRVFFLKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAERALGL 325          
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A5N6P849_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P849_9ASTR)

HSP 1 Score: 105 bits (263), Expect = 8.580e-22
Identity = 73/247 (29.55%), Postives = 119/247 (48.18%), Query Frame = 0
Query:   54 SVAHIPELGHNLISTRRATDTSGKSFVYNANKACVEEEESLVFNVLAPSG-VYEVEAVRSAAGTAKALKTRKSAKRDVMDMHGLLTHAS----EQITGDTVETAGVVLTDEWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLKIGAIRTDNDGEFDGN-FHLTLDEYGITHELTPPDTPQYNSVAERR 294
            +V +IP L +N+IS  + T+   ++ + +      +E E LV  V   S  +Y++     A    K +        D    H  L H +    E+++   +     ++      C GC  AK  R + P  +  RAT+  E  + D+ GP+  +++GG  Y ++IVDDC+R+  V F+K K  A    + ++ +     GLK+  +RTD  GEF+ + F+    + GI   LT P TPQ N V ERR
Sbjct:  410 NVYYIPALKNNVISLGQLTEGGYEAVMKDNYLRLFDETERLVMKVQRSSNRLYKI-----ALTIGKQVCLAMKLDEDAWVWHARLGHTNFGVLEEMSKRKLVEGMPLIKHPAKICEGCLIAKQPRKSFPSVSAWRATKPLELIHADICGPITPSSMGGKRYFLLIVDDCTRYMWVYFLKTKDEACNTFKGFVTEVERQSGLKVKVLRTDRGGEFNSSVFNEFCQKTGIKRHLTAPYTPQQNGVVERR 651          
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 9.500e-21
Identity = 57/129 (44.19%), Postives = 76/129 (58.91%), Query Frame = 0
Query:  176 VPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGL--KIGAIRTDNDGEF-----DGNFHLTLDEYGITHELTPPDTPQYNSVAERRLGL 297
            V K T  RA +   R Y+DLGG M+  ++GG+ Y +II DD SR+  V F+K K GA    + + AD+ T KG+  ++   RTD  GEF     +G F      +GI  E TPP+TP+YN VAER LGL
Sbjct:    9 VQKSTSTRAVKMLSRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSGAAVGFEKFPADHRT-KGVPREVYIARTDGGGEFQGQFAEGQFAEVCRRHGIKQEFTPPNTPKYNGVAERALGL 136          
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 102 bits (254), Expect = 1.440e-20
Identity = 82/275 (29.82%), Postives = 119/275 (43.27%), Query Frame = 0
Query:   22 IANRTFVPVAGWGCLVLLVGQPGGKSR-VAKSNSVAHIPELGHNLISTRRATDTSGKSFVYNANKACVEEEESLVFNVLAPSGVYEVEAVRSAAGTAKALKTRKSAKRDVMDMHGLLTHASEQITGDTVETAGVV-LTDEWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLKIGAIRTDNDGEF-DGNFHLTLDEYGITHELTPPDTPQYNSVAER 293
            +A+   +P  G G +V  V    G  + V  +  V ++P +  NL+S  + T+ +G    +      V      VFN    +G+Y + A  S   T +A   R S         G L   +      T    G+  L  E   C  C T K  R       +++++   +  +VDL GP+ V +LGGS Y++ +VDD SR   V F+K K  A   L  YI       G K+  +RTDN  EF +          GI HE T P +P  N VAER
Sbjct:  319 LADGKTIPTQGVGTVVFEVKNGNGNGKNVLTAKDVLYVPGMADNLLSVSKLTE-NGMDVRFVDEYCNVYFRNQFVFNATKEAGIYRLRAKISRPNTQQASGARVSTAELWHRRMGHLNRETLVRMSRTEADRGMPKLKQEDFECVPCITGKHSRNPFNPSQERQSSSLLDLVHVDLCGPLPVCSLGGSRYILAVVDDHSRRITVRFLKSKDEAAEILTEYINQVERQTGSKVKRVRTDNGTEFVNRGLQHVFKRKGIVHERTAPFSPPQNGVAER 592          
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.420e-19
Identity = 48/100 (48.00%), Postives = 61/100 (61.00%), Query Frame = 0
Query:  199 MQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPK-GLKIGAIRTDNDGEFDGNFHLTLDEYGITHELTPPDTPQYNSVAERRLGL 297
            MQ  ++GG+ Y +II DDC+R+  V F+K K  A AA + Y+ADY       ++   RTD  GEF G F      YGI  E TPP+TP+YN VAER LGL
Sbjct:    1 MQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGL 100          
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A2X0MB77_9BASI (BQ5605_C007g04454 protein n=2 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0MB77_9BASI)

HSP 1 Score: 97.1 bits (240), Expect = 9.470e-19
Identity = 77/260 (29.62%), Postives = 114/260 (43.85%), Query Frame = 0
Query:   49 VAKSNSVAHIPELGHNLISTRRATDTSGKSFVYNANKACVEEEESLVFNVLAPSGVYEVEA--------VRSAAGTAKALKTRKSAKRDVMDMHGLLTHASEQITGDTVETAGV------VLTDEWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLKIGAIRTDNDGEFDGN-FHLTLDEYGITHELTPPDTPQYNSVAER 293
            + + N    +P    NL S  RA D  G        KA V   +++       +G+Y ++A        V  A    +AL     +      +HG   H   +     + T  V      V ++E   C+ C   K      P     R+ +  ER ++DL       +LGG+ Y ++IVDD SR+  V  +  K    AA +S++A        K+ A+R+DN GEF  N F   L+E GIT +L+ PDTPQ N VAER
Sbjct:  351 IGQLNDALFVPTAPVNLFSASRA-DIGGYDIRLTQAKATVSIADTVCHTGKLKNGLYHMQASLVDVAALVHQAGAFPRALVAVPMSV-----LHGRFAHLHPRALRQLISTEAVSGVSMEVDSNEDLKCDSCQAGKITHHPFPAVASNRSAQPLERVHMDLLAFDGAVSLGGARYALVIVDDHSRYLWVIPMSHKSDTFAAFKSWLAKVERSTSRKVLAVRSDNGGEFMSNKFSRFLEEQGITRQLSIPDTPQQNGVAER 604          
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A8J5ESC8_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5ESC8_ZINOF)

HSP 1 Score: 95.5 bits (236), Expect = 2.990e-18
Identity = 55/139 (39.57%), Postives = 72/139 (51.80%), Query Frame = 0
Query:  158 DEWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLKIGAIRTDNDGEFDGNFHLTL-DEYGITHELTPPDTPQYNSVAERRL 295
            D  G C GC   K+HR      T  R T   ER + DL GP + T+    +Y+++ VDD SRF  V F+K K    +    +        G KI  +RTDN GEF  N  L+   + GI  EL+ PDTPQ N VAER++
Sbjct:  381 DNEGVCEGCQFGKSHRLPFENSTS-RCTTPLERIHSDLMGPTKTTSYSEGNYMLLFVDDYSRFTWVYFVKHKSETFSIFLDFKKIVEGELGRKIKTLRTDNGGEFCSNEFLSFCRDNGIKRELSCPDTPQQNGVAERKI 518          
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A8J5GTW8_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GTW8_ZINOF)

HSP 1 Score: 95.5 bits (236), Expect = 3.290e-18
Identity = 80/256 (31.25%), Postives = 116/256 (45.31%), Query Frame = 0
Query:   53 NSVAHIPELGHNLISTRRATDTSG--------KSFVYNAN--KACVEEEESLVFN--VLAPSGVYEVEAVRSAAGTAKALKTRKSAKRDVMDMHGLLTHASEQITGDTVETAGVVLTDEWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLKIGAIRTDNDGEFDGNFHLTL-DEYGITHELTPPDTPQYNSVAERRL 295
            NSV H+P +  NL S   A D             F+ N    KA V    + V +  VL+ S  Y +E +RS      +L   +    ++  M  ++     +   D+++       D  G C GC   K+HR      T +  T   ER + DL GP + T+    +Y+++ VDD SRF  V F+K K    +    +        G KI  +RTDN GEF  N  L+   + GI  EL+ PDTPQ N VAER++
Sbjct:  589 NSVYHVPGIQKNLFSVANAVDAGNFVLFGPRDVKFLRNVKEIKADVVHTGTRVKDLFVLSTSNSY-IEKMRS--NDTSSLWHARLGHINMTKMRAIIQKKLVEGLPDSMKI------DNEGVCEGCQFGKSHRLPFQNSTSRCMT-PLERIHSDLMGPTKTTSYSEGNYMLLFVDDYSRFTWVYFVKHKSETFSIFLDFKKIVEGELGRKIKTLRTDNGGEFCSNEFLSFCRDNGIKRELSCPDTPQQNGVAERKI 834          
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Match: A0A8J5F3M1_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3M1_ZINOF)

HSP 1 Score: 94.4 bits (233), Expect = 7.140e-18
Identity = 73/244 (29.92%), Postives = 106/244 (43.44%), Query Frame = 0
Query:   53 NSVAHIPELGHNLISTRRATDTSGKSFVYNANKACVEEEESLVFNVLAPSGVYEVEAVRSAAGTAKALKTRKSAKRDVMDMHGLLTHASEQITGDTVETAGVVLTDEWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQVTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLKIGAIRTDNDGEFDGNFHLTL-DEYGITHELTPPDTPQYNSVAERRL 295
            NSV H+PE+  NL S   A D          N       +  +F     S +     +RS      +L   +    ++  M  ++     +   D+++       D  G C GC   K+HR      T  R T   ER + DL GP + T+    +Y+++ VDD SRF  V F+K K    +    +        G KI  +R DN GEF  N  L+   + GI  EL+ PDTPQ N VAER++
Sbjct:  244 NSVYHVPEIQKNLFSVANAVDAG--------NFVLFGPRDVKLFGTSRKSRLMLFIQMRS--NDTSSLWHARLGHINMTKMRAIIQKKLVEGLYDSMKI------DNEGVCEGCQFGKSHRLPFENSTS-RCTTPLERIHSDLMGPTKTTSYSEGNYMLLFVDDYSRFTWVYFVKHKPETFSIFLDFKKIVEGELGRKIKTLRIDNGGEFCSNEFLSFCRDNGIKRELSCPDTPQQNEVAERKI 470          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2.5107.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE2.200e-3233.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGJ8_9PHAE3.900e-2331.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6P849_9ASTR8.580e-2229.55Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A6H5K293_9PHAE9.500e-2144.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A293MM55_ORNER1.440e-2029.82Reverse transcriptase, gag, polyprotein (Fragment)... [more]
A0A6H5KKB4_9PHAE2.420e-1948.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A2X0MB77_9BASI9.470e-1929.62BQ5605_C007g04454 protein n=2 Tax=Microbotryum sil... [more]
A0A8J5ESC8_ZINOF2.990e-1839.57Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A8J5GTW8_ZINOF3.290e-1831.25Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A8J5F3M1_ZINOF7.140e-1829.92Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 185..296
e-value: 6.3E-13
score: 49.0
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 183..297
score: 15.068
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 177..296
e-value: 4.0E-15
score: 57.5
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 52..294
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 52..294
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 183..295

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2contigH-paniculata_contig2:6447..7337 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2.5107.1mRNA_H-paniculata_contig2.5107.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2 6447..7367 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2.5107.1 ID=prot_H-paniculata_contig2.5107.1|Name=mRNA_H-paniculata_contig2.5107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=297bp
MPSDETALDDYTSALPGIMCEIANRTFVPVAGWGCLVLLVGQPGGKSRVA
KSNSVAHIPELGHNLISTRRATDTSGKSFVYNANKACVEEEESLVFNVLA
PSGVYEVEAVRSAAGTAKALKTRKSAKRDVMDMHGLLTHASEQITGDTVE
TAGVVLTDEWGACNGCSTAKAHRFAVPKKTDKRATRAAERFYVDLGGPMQ
VTNLGGSSYVMIIVDDCSRFQAVTFIKKKRGAIAALQSYIADYITPKGLK
IGAIRTDNDGEFDGNFHLTLDEYGITHELTPPDTPQYNSVAERRLGL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf