mRNA_H-paniculata_contig1979.5039.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1979.5039.1
Unique NamemRNA_H-paniculata_contig1979.5039.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: A0A6H5KLH5_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLH5_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 8.810e-89
Identity = 174/314 (55.41%), Postives = 205/314 (65.29%), Query Frame = 1
Query:    1 RPSFDATQVLHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNKPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIH-NLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRMRAPPPDCWAELCG 939
            RPSF    VL+MDN +L +NKPAGLLSQ DRTGD DV AL+REYVRV  NK GEAFVA+VHRLDRP         +SGVMC+ARTSKAAARLSASFR RD VEK Y+AVV G L+G G R+D LV   +S   A+  RGPR  +    V  GA   GG   A    + ++G + A LEWEAI  + +SA+   C  TG     P TLVR++LITGRKHQIR QLA MGHP+VGD RYG RSS     +SRG     D  +        +  + PL+D+SILLHASEL VPHPTR G  VR  A PP  W++LCG
Sbjct:   38 RPSFRVEDVLYMDNHVLLVNKPAGLLSQSDRTGDADVAALAREYVRVAANKTGEAFVALVHRLDRP---------VSGVMCVARTSKAAARLSASFRARDGVEKIYHAVVAGGLAGRGIRQDFLVSPDASGAVARRGRGPRTGLSSAPVRGGA---GGRLLAAGPTSSSEG-KLAQLEWEAIDVSPSSADRLRCPRTGN----PRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYG-RSSWC---QSRGG----DATDESAVPPPRAGSMEPLEDRSILLHASELIVPHPTRVGAMVRAVAAPPGMWSDLCG 326          
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: D8LGZ5_ECTSI (23S RNA-specific pseudouridylate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ5_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 9.650e-53
Identity = 118/234 (50.43%), Postives = 140/234 (59.83%), Query Frame = 1
Query:  238 MCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRMRAPPPDCWAELCG 939
            MC+ARTSKAAARLSASFR RD VEK Y+AVV G L+G G R+DLLV   +S   A+  RGPR  +       GA    G R        +   + A LEWEAI+  +S+  +L  P  G    P TLVR++LITGRKHQIR QLA MGHP+VGD RYG          SRG  +  D   V      G   + PL+D+SILLHASEL VPHPTR G  VR  A PP  W++LCG
Sbjct:    1 MCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQDLLVSPDASGAVARRGRGPRAGLSSVPARGGA----GGRLLAAGPTSSPDGKLAQLEWEAINVSSSSAVRLRCPRTGN---PRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYG---------RSRGG-DATDESAVPPPRRAGR--IEPLEDRSILLHASELIVPHPTRVGATVRAVAAPPGMWSDLCG 215          
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: A0A259TYX9_9BACT (PseudoU_synth_2 domain-containing protein n=1 Tax=Rubricoccus marinus TaxID=716817 RepID=A0A259TYX9_9BACT)

HSP 1 Score: 161 bits (408), Expect = 9.540e-45
Identity = 116/304 (38.16%), Postives = 150/304 (49.34%), Query Frame = 1
Query:   22 QVLHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNKPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKD-KSILLHASELAVPHPTRPGEAVRMRAPPPDCWAE 930
            ++L +DN +L + KPAG+LSQGD TGD DV   ++ +++   NKPG  FV +V RLDRP          SGVM +ARTSKAA+RL+  FR R SVEK Y A+V G+L GSG  ED L   F + +   G R  R++                         T G+++AVLEW A+  +                R  TLVR+ L TGR HQ+R QL G+GHPIVGD+RY                                +   PL D  SI LHA+ LA+ HPT+     R  A PP  W E
Sbjct:    4 EILFLDNHLLVVAKPAGMLSQGDSTGDRDVANWAKAFLKREFNKPGNVFVGLVQRLDRPA---------SGVMVLARTSKAASRLTEQFRKR-SVEKVYLALVEGKLEGSGRLEDWL---FKTHDTETGTRVKRVSST-----------------------TSGAKKAVLEWRALATV----------------RGRTLVRVVLETGRPHQVRVQLGGIGHPIVGDLRY--------------------------------AAPVPLGDGHSIALHAAHLALDHPTQKDRR-RFTAAPPPAWGE 222          
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: A0A800M4B4_9BACT (RluA family pseudouridine synthase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A800M4B4_9BACT)

HSP 1 Score: 151 bits (382), Expect = 6.870e-41
Identity = 107/296 (36.15%), Postives = 145/296 (48.99%), Query Frame = 1
Query:   25 VLHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNKPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRMRAPP 912
            VL++DN +L + KPAG+LSQ D TGD+DV+  +++++R   +KPG  F  +VHRLDRP         + G M IARTSKAA+RL+  FR R + EK Y A+V G L GSG   D L+            RG R+  VR+                    GT G++RAV+ W +   L +                 +LV + L TGR HQIR QL+G+GHPIVGD+RYG  + +   G+ RG                            I LHA+ L + HPT+        APP
Sbjct:    5 VLYLDNHLLVVAKPAGMLSQADDTGDLDVVTWAKDFLRREFDKPGNVFAGLVHRLDRP---------VGGAMVIARTSKAASRLAEQFRQR-TPEKRYLAMVEGRLDGSGRETDWLLKTRDPK------RGTRVKRVRQ--------------------GTDGAKRAVMTWTSRSVLGT----------------RSLVEVGLETGRAHQIRVQLSGLGHPIVGDLRYGAEAPL---GDGRG----------------------------IALHATHLTIEHPTKRDRRTFTSAPP 217          
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: A0A848XZP8_9BACT (RNA pseudouridine synthase n=1 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A848XZP8_9BACT)

HSP 1 Score: 149 bits (376), Expect = 3.720e-40
Identity = 106/301 (35.22%), Postives = 144/301 (47.84%), Query Frame = 1
Query:   22 QVLHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNKPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRMRAPPPDCW 924
            +VL++DN +L + KP GLL+Q DRTGD D+L   + +++   +KPG  F+ +VHRLDRP         +SGVM +ARTSKAA RLS +FR+R  VEK Y A+V G +SG+G RED L+               R+ +V      G                    +RAVL W+A+                G +   +LV +KL+TGR HQ+R QLA +G PI+GD RYG                                    L  +++ LHA  LA  HP R  E +   APPP  W
Sbjct:    2 EVLYLDNHLLVVVKPPGLLAQADRTGDTDLLTQGKAFLKEKFDKPGNVFLGLVHRLDRP---------VSGVMVLARTSKAAGRLSKAFRERR-VEKRYLALVEGRMSGAGEREDYLLKEDG-----------RVRIVSADHPKG--------------------KRAVLRWQAL----------------GEEGRLSLVEVKLLTGRAHQVRVQLAALGTPILGDFRYG--------------------------------ATRELDGRNLALHAYRLAFEHPVR-REPLVFTAPPPVSW 212          
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: A0A2H5XHX8_9BACT (Ribosomal large subunit pseudouridine synthase D n=2 Tax=Bacteria TaxID=2 RepID=A0A2H5XHX8_9BACT)

HSP 1 Score: 145 bits (366), Expect = 1.860e-38
Identity = 113/304 (37.17%), Postives = 147/304 (48.36%), Query Frame = 1
Query:   13 DATQVLHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNKPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRMRAPPPDCW 924
            +A  VL+ DN +L INKPAGL SQGDR+G   VL+L++ ++++  +KPG  ++ +VHRLD P         +SGVM +ARTSKAAARL   FRDR +V+KTY A+V GEL G GT ED + P            G  M +V ES   G                    +RAVL W+A   L S N               TL+R+   TGRKHQIR QLA  G+PI+GD RY  R +                                     + LHA +L + HPT+    +   APPP  W
Sbjct:    9 EALPVLYYDNHLLVINKPAGLRSQGDRSGAPTVLSLAKAWLKMQCHKPGNVYLGLVHRLDAP---------VSGVMVLARTSKAAARLMQQFRDR-TVQKTYLALVEGELEGGGTWEDYVAPA-----------GESMRLVPESHPWG--------------------RRAVLHWQA---LLSRNGL-------------TLLRLVPETGRKHQIRVQLAFRGYPILGDRRYRSRRAFV--------------------------------PHQLALHAWQLQLTHPTQ-RIPMAWSAPPPVTW 222          
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: A0A1M6P7L7_9BACT (Ribosomal large subunit pseudouridine synthase D n=1 Tax=Rhodothermus profundi TaxID=633813 RepID=A0A1M6P7L7_9BACT)

HSP 1 Score: 144 bits (364), Expect = 3.590e-38
Identity = 110/300 (36.67%), Postives = 141/300 (47.00%), Query Frame = 1
Query:   25 VLHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNKPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRMRAPPPDCW 924
            VL++DN +L +NKPAGL SQGDR+G   VL+L +  ++   NKPG  ++ +VHRLD P         +SGVM +ARTSKAAARL   FR+R +VEK Y A+V GEL G G  ED + P               M +V                     A     +RAVL WEA+                      TLVR+   TGRKHQIR QLA  G+P++GD RY  R                               L+P     + LHA +L+V HPTR  E ++  AP P CW
Sbjct:    9 VLYLDNHLLVVNKPAGLRSQGDRSGAPTVLSLGKALIKERFNKPGNVYLGLVHRLDAP---------VSGVMVLARTSKAAARLMQQFRER-TVEKIYLALVEGELEGEGVWEDFIAPARD-----------HMRLVS--------------------ADHPWGKRAVLRWEALMTRNGL----------------TLVRLIPETGRKHQIRVQLAFRGYPVLGDRRYRARR-----------------------------WLAP---GQMALHAWKLSVTHPTR-RERMQWTAPVPSCW 218          
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: A0A271J2Z8_9BACT (PseudoU_synth_2 domain-containing protein n=1 Tax=Rubrivirga marina TaxID=1196024 RepID=A0A271J2Z8_9BACT)

HSP 1 Score: 141 bits (355), Expect = 5.890e-37
Identity = 105/302 (34.77%), Postives = 145/302 (48.01%), Query Frame = 1
Query:   28 LHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNKPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRMRAPPPDCWAEL 933
            L++DN +L ++KP GLL+Q DRTGD D+++L++ Y++   +KPG  FV +VHRLDRP          SGVM +ARTSKAA+RLS  FR R   +K Y AVV G+    G   + +  +                           ++GG  S      G    QRA L +  +                  D   +LV ++L+TGRKHQIRAQLA +G PI+GD RYG ++  +   + RG                            + LHA  L V HPT+  E V + APPP+ WA L
Sbjct:    4 LYLDNHLLAVSKPPGLLTQADRTGDPDLVSLAKAYLKERFDKPGNVFVGLVHRLDRPA---------SGVMMLARTSKAASRLSDQFRRRVP-QKRYLAVVEGDPGDGGAWTERVDAI---------------------------DKGGGGSVDVVPVGE--GQRAALRYRTL----------------ARDSARSLVEVELLTGRKHQIRAQLAELGAPILGDFRYGNQTPFA---DGRG----------------------------VALHAYRLVVEHPTK-REPVTVVAPPPEAWAGL 218          
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: A0A7Y2GAW4_9BACT (RNA pseudouridine synthase n=1 Tax=Rhodothermales bacterium TaxID=2306054 RepID=A0A7Y2GAW4_9BACT)

HSP 1 Score: 140 bits (354), Expect = 1.080e-36
Identity = 109/307 (35.50%), Postives = 141/307 (45.93%), Query Frame = 1
Query:    4 PSFDATQVLHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNKPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRMRAPPPDCW 924
            P+  +  VL+ DN +L + KPAG+ SQ DRTGD D+L   + Y++   +KPG  F+ + HRLDRP          SGVM +ARTSKAA+RL   F DRD VEK Y A+V G + G GT E                 G      R  VAA   EEG              +Q A L+WE +                      T+V ++L TGRKHQIR QLA +GHPIVGD+RYG                         EF+           +++ LH   L + HPT  G A+  +A PP  W
Sbjct:    2 PTPFSEYVLYCDNHLLVVCKPAGMPSQRDRTGDPDLLTAGKGYLKEKFDKPGRVFLGLAHRLDRPA---------SGVMVLARTSKAASRLGRQFLDRD-VEKQYVALVEGSVVGQGTTE----------------AGYLKKSERGVVAASRGEEG--------------AQYAELDWEKVKETARG----------------TIVNVRLKTGRKHQIRHQLARIGHPIVGDMRYG----------------------ATREFD----------GRNLALHCYLLTIDHPTL-GHAMSWQALPPLSW 219          
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: A0A3N1UFZ4_9DELT (23S rRNA pseudouridine1911/1915/1917 synthase n=1 Tax=Desulfosoma caldarium TaxID=610254 RepID=A0A3N1UFZ4_9DELT)

HSP 1 Score: 139 bits (351), Expect = 6.680e-36
Identity = 109/300 (36.33%), Postives = 147/300 (49.00%), Query Frame = 1
Query:   25 VLHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNKPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRMRAPPPDCW 924
            VLH+DN +L + KPAGLL QGD +GD+ +L L+R++++    KPG  FV +VHRLDRP         +SG++ +ARTSKAA+RLSA FR+ +  +K Y AVV G  S +           + V+G          ++R+           S+S       T G+QRA L +  +                      TL+ + L TGRKHQIRAQLA  G PIVGDVRYG  + + YR                                SI LHA +L +PHPT+ GEAV +  P P  W
Sbjct:   32 VLHVDNHLLAVYKPAGLLVQGDPSGDLSLLDLARKWIKERYKKPGNVFVGLVHRLDRP---------VSGLVLLARTSKAASRLSAVFRE-NRAQKIYLAVVEGRPSRA---------CATLVHG----------LIRQE----------SKSVAVLPVKTPGTQRAELHYRTV----------------AFSDQRTLLAVHLKTGRKHQIRAQLAHEGCPIVGDVRYGAPTPLPYR--------------------------------SIALHAWKLTLPHPTK-GEAVEISCPLPLNW 243          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLH5_9PHAE8.810e-8955.41PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
D8LGZ5_ECTSI9.650e-5350.4323S RNA-specific pseudouridylate synthase n=1 Tax=... [more]
A0A259TYX9_9BACT9.540e-4538.16PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A800M4B4_9BACT6.870e-4136.15RluA family pseudouridine synthase n=1 Tax=Bactero... [more]
A0A848XZP8_9BACT3.720e-4035.22RNA pseudouridine synthase n=1 Tax=Rhodothermaceae... [more]
A0A2H5XHX8_9BACT1.860e-3837.17Ribosomal large subunit pseudouridine synthase D n... [more]
A0A1M6P7L7_9BACT3.590e-3836.67Ribosomal large subunit pseudouridine synthase D n... [more]
A0A271J2Z8_9BACT5.890e-3734.77PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A7Y2GAW4_9BACT1.080e-3635.50RNA pseudouridine synthase n=1 Tax=Rhodothermales ... [more]
A0A3N1UFZ4_9DELT6.680e-3636.3323S rRNA pseudouridine1911/1915/1917 synthase n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1979contigH-paniculata_contig1979:986..2731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score147.1
Seed ortholog evalue1.3e-32
Seed eggNOG ortholog518766.Rmar_1191
Preferred namerluC
KEGG koko:K06177,ko:K06180
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA pseudouridylate synthase
EggNOG OGs1FJD9@1100069,4NFS8@976,COG0564@1,COG0564@2
EC5.4.99.23,5.4.99.28,5.4.99.29
COG Functional cat.J
Best tax levelBacteroidetes Order II. Incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03016
Exons3
Model size939
Cds size939
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1979.5039.1prot_H-paniculata_contig1979.5039.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1979 986..2731 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929494.5805461-CDS-H-paniculata_contig1979:985..10301622929494.5805461-CDS-H-paniculata_contig1979:985..1030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1979 986..1030 +
1691480886.2973177-CDS-H-paniculata_contig1979:985..10301691480886.2973177-CDS-H-paniculata_contig1979:985..1030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1979 986..1030 +
1622929494.5970407-CDS-H-paniculata_contig1979:1460..16411622929494.5970407-CDS-H-paniculata_contig1979:1460..1641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1979 1461..1641 +
1691480886.3070736-CDS-H-paniculata_contig1979:1460..16411691480886.3070736-CDS-H-paniculata_contig1979:1460..1641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1979 1461..1641 +
1622929494.613524-CDS-H-paniculata_contig1979:2018..27311622929494.613524-CDS-H-paniculata_contig1979:2018..2731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1979 2019..2731 +
1691480886.314608-CDS-H-paniculata_contig1979:2018..27311691480886.314608-CDS-H-paniculata_contig1979:2018..2731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1979 2019..2731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1979.5039.1

>prot_H-paniculata_contig1979.5039.1 ID=prot_H-paniculata_contig1979.5039.1|Name=mRNA_H-paniculata_contig1979.5039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=313bp
RPSFDATQVLHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTN
KPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRD
SVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVA
AGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGA
DRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRG
SRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRM
RAPPPDCWAELCG
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mRNA from alignment at H-paniculata_contig1979:986..2731+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1979.5039.1 ID=mRNA_H-paniculata_contig1979.5039.1|Name=mRNA_H-paniculata_contig1979.5039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1746bp|location=Sequence derived from alignment at H-paniculata_contig1979:986..2731+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACCGTCTTTCGACGCAACTCAAGTGCTTCACATGGACAACCAGGTACG CTGAACTGAGCACACTGCACTGCATTGCTAAATAACAGTTGCTAGTGGGT GTCAGCCAACGCTCGCGCGTGCGTTTTCATGCGGCATGCTGACAGCAGCA TCATCTTTGGAGTACCATGCATATTGAACGAGTACATTGCGTTGCAACCG GCACACATTTCCCTCAAGAACGGATAACGATTTAGTATATGAAAGTCGAT TAATGGTTTCACGAGGTCTCATAGATGAAAAATATATCTGCGGTCATCTT ATCGCACTGTCAGGATAACCACCGACCTATGTCAGCTATTTGCACAGAAC TCATTTACAGTTTACTGTTTAATTAACCTTCCTGCAGACCGAAGGTACAG AGATTTGTACTGTCCAAAGCGTGAAACTCATTCTCCATGTTTGTGTCGAA TATTACCAATGCGACTGGCACAAAGATGTTGTGGATAAATAAGCCGGCCG GCCTACTGTCTCAAGGTGACCGTACCGGCGATGTGGACGTTTTGGCGCTC AGTCGAGAATACGTCCGAGTCACCACCAACAAACCTGGGGAAGCGTTTGT AGCCATGGTGCATCGTCTCGACCGACCAGGCAAGACGACAAAAATATATG CGCTTAGTCGGTTAGGAATGGATTACTTGAATTTCTGTGCTGTGCTGTGC TGTGCTGTGCAATTTAACTAGTTCGTAGCCCGCCTAAAACCGTCGCTTGC CGATATATTTCAAATGGTTGTTGTCATCCTCTCCACAGACATCTATATAA CAAGAGAAACTGTTGCGCGTGTTTGTGTTGGGCTGCGTTTGTTGTAGCGA TCAAGACGTTCTCCGCAAGATACGATAACGACGTCACAACCACCAGATAA CCATGCGCAACGTATAAACTGTAAACCAAATATAAAACATAATATGACGC TGCCCCCATCCGCCCCCCCACCGCTCGGTTCTCCTTACCCCTCGTCATAC CAAATCATCACCACTGTCGTCATCGTCGTGCAGTGTCAGGGGTGATGTGC ATAGCTCGAACCAGCAAAGCCGCCGCCAGATTGTCCGCTAGCTTTCGGGA CCGCGACAGCGTAGAGAAAACATACTACGCAGTGGTTACCGGCGAGCTGT CCGGCAGCGGCACCCGTGAAGATCTCCTCGTGCCGGTTTTTTCCAGTGTT AACGGTGCAAAGGGGGTGCGGGGTCCTCGGATGACGGTAGTCCGGGAAAG CGTAGCAGCCGGGGCGGCGGAAGAAGGCGGCTCAAGGAGCGCAGGCCGGG CAGAGGCCGGGACCAAAGGTTCTCAGCGCGCCGTGTTGGAATGGGAAGCA ATCCATAATCTTACTTCAGCCAACGCCAAGCTATGCCATCCCACCGGAGG TGGCGCAGATCGCCCGCACACCCTTGTGCGCATCAAACTCATCACGGGGC GAAAACACCAGATCAGAGCACAGCTGGCGGGGATGGGCCACCCTATAGTG GGTGACGTGCGCTACGGCGGAAGGTCGTCTGTTTCTTACCGCGGCGAGAG CAGGGGCAGCAGAAATGGTAAGGACAGAGTCGAGGTGATGGAGGAATTTG AAACAGGGAGTTCCGGACTTTCGCCGCTGAAGGACAAGAGTATCTTGCTG CACGCGAGCGAGTTGGCGGTGCCGCATCCGACGCGACCTGGCGAAGCAGT GCGCATGCGAGCACCGCCGCCTGATTGCTGGGCTGAGCTCTGCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1979:986..2731+

>mRNA_H-paniculata_contig1979.5039.1 ID=mRNA_H-paniculata_contig1979.5039.1|Name=mRNA_H-paniculata_contig1979.5039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at H-paniculata_contig1979:986..2731+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACCGTCTTTCGACGCAACTCAAGTGCTTCACATGGACAACCAGAGACC
GTCTTTCGACGCAACTCAAGTGCTTCACATGGACAACCAGATGTTGTGGA
TAAATAAGCCGGCCGGCCTACTGTCTCAAGGTGACCGTACCGGCGATGTG
GACGTTTTGGCGCTCAGTCGAGAATACGTCCGAGTCACCACCAACAAACC
TGGGGAAGCGTTTGTAGCCATGGTGCATCGTCTCGACCGACCAGGCAAGA
CGACAAAAATATATGCGCTTAATGTTGTGGATAAATAAGCCGGCCGGCCT
ACTGTCTCAAGGTGACCGTACCGGCGATGTGGACGTTTTGGCGCTCAGTC
GAGAATACGTCCGAGTCACCACCAACAAACCTGGGGAAGCGTTTGTAGCC
ATGGTGCATCGTCTCGACCGACCAGGCAAGACGACAAAAATATATGCGCT
TATGTCAGGGGTGATGTGCATAGCTCGAACCAGCAAAGCCGCCGCCAGAT
TGTCCGCTAGCTTTCGGGACCGCGACAGCGTAGAGAAAACATACTACGCA
GTGGTTACCGGCGAGCTGTCCGGCAGCGGCACCCGTGAAGATCTCCTCGT
GCCGGTTTTTTCCAGTGTTAACGGTGCAAAGGGGGTGCGGGGTCCTCGGA
TGACGGTAGTCCGGGAAAGCGTAGCAGCCGGGGCGGCGGAAGAAGGCGGC
TCAAGGAGCGCAGGCCGGGCAGAGGCCGGGACCAAAGGTTCTCAGCGCGC
CGTGTTGGAATGGGAAGCAATCCATAATCTTACTTCAGCCAACGCCAAGC
TATGCCATCCCACCGGAGGTGGCGCAGATCGCCCGCACACCCTTGTGCGC
ATCAAACTCATCACGGGGCGAAAACACCAGATCAGAGCACAGCTGGCGGG
GATGGGCCACCCTATAGTGGGTGACGTGCGCTACGGCGGAAGGTCGTCTG
TTTCTTACCGCGGCGAGAGCAGGGGCAGCAGAAATGGTAAGGACAGAGTC
GAGGTGATGGAGGAATTTGAAACAGGGAGTTCCGGACTTTCGCCGCTGAA
GGACAAGAGTATCTTGCTGCACGCGAGCGAGTTGGCGGTGCCGCATCCGA
CGCGACCTGGCGAAGCAGTGCGCATGCGAGCACCGCCGCCTGATTGCTGG
GCTGAGCTCTGCGGGTGTCAGGGGTGATGTGCATAGCTCGAACCAGCAAA
GCCGCCGCCAGATTGTCCGCTAGCTTTCGGGACCGCGACAGCGTAGAGAA
AACATACTACGCAGTGGTTACCGGCGAGCTGTCCGGCAGCGGCACCCGTG
AAGATCTCCTCGTGCCGGTTTTTTCCAGTGTTAACGGTGCAAAGGGGGTG
CGGGGTCCTCGGATGACGGTAGTCCGGGAAAGCGTAGCAGCCGGGGCGGC
GGAAGAAGGCGGCTCAAGGAGCGCAGGCCGGGCAGAGGCCGGGACCAAAG
GTTCTCAGCGCGCCGTGTTGGAATGGGAAGCAATCCATAATCTTACTTCA
GCCAACGCCAAGCTATGCCATCCCACCGGAGGTGGCGCAGATCGCCCGCA
CACCCTTGTGCGCATCAAACTCATCACGGGGCGAAAACACCAGATCAGAG
CACAGCTGGCGGGGATGGGCCACCCTATAGTGGGTGACGTGCGCTACGGC
GGAAGGTCGTCTGTTTCTTACCGCGGCGAGAGCAGGGGCAGCAGAAATGG
TAAGGACAGAGTCGAGGTGATGGAGGAATTTGAAACAGGGAGTTCCGGAC
TTTCGCCGCTGAAGGACAAGAGTATCTTGCTGCACGCGAGCGAGTTGGCG
GTGCCGCATCCGACGCGACCTGGCGAAGCAGTGCGCATGCGAGCACCGCC
GCCTGATTGCTGGGCTGAGCTCTGCGGG
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