mRNA_H-paniculata_contig1979.5039.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: A0A6H5KLH5_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLH5_9PHAE) HSP 1 Score: 278 bits (711), Expect = 8.810e-89 Identity = 174/314 (55.41%), Postives = 205/314 (65.29%), Query Frame = 1
Query: 1 RPSFDATQVLHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNKPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIH-NLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRMRAPPPDCWAELCG 939
RPSF VL+MDN +L +NKPAGLLSQ DRTGD DV AL+REYVRV NK GEAFVA+VHRLDRP +SGVMC+ARTSKAAARLSASFR RD VEK Y+AVV G L+G G R+D LV +S A+ RGPR + V GA GG A + ++G + A LEWEAI + +SA+ C TG P TLVR++LITGRKHQIR QLA MGHP+VGD RYG RSS +SRG D + + + PL+D+SILLHASEL VPHPTR G VR A PP W++LCG
Sbjct: 38 RPSFRVEDVLYMDNHVLLVNKPAGLLSQSDRTGDADVAALAREYVRVAANKTGEAFVALVHRLDRP---------VSGVMCVARTSKAAARLSASFRARDGVEKIYHAVVAGGLAGRGIRQDFLVSPDASGAVARRGRGPRTGLSSAPVRGGA---GGRLLAAGPTSSSEG-KLAQLEWEAIDVSPSSADRLRCPRTGN----PRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYG-RSSWC---QSRGG----DATDESAVPPPRAGSMEPLEDRSILLHASELIVPHPTRVGAMVRAVAAPPGMWSDLCG 326
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: D8LGZ5_ECTSI (23S RNA-specific pseudouridylate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ5_ECTSI) HSP 1 Score: 182 bits (462), Expect = 9.650e-53 Identity = 118/234 (50.43%), Postives = 140/234 (59.83%), Query Frame = 1
Query: 238 MCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRMRAPPPDCWAELCG 939
MC+ARTSKAAARLSASFR RD VEK Y+AVV G L+G G R+DLLV +S A+ RGPR + GA G R + + A LEWEAI+ +S+ +L P G P TLVR++LITGRKHQIR QLA MGHP+VGD RYG SRG + D V G + PL+D+SILLHASEL VPHPTR G VR A PP W++LCG
Sbjct: 1 MCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQDLLVSPDASGAVARRGRGPRAGLSSVPARGGA----GGRLLAAGPTSSPDGKLAQLEWEAINVSSSSAVRLRCPRTGN---PRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYG---------RSRGG-DATDESAVPPPRRAGR--IEPLEDRSILLHASELIVPHPTRVGATVRAVAAPPGMWSDLCG 215
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: A0A259TYX9_9BACT (PseudoU_synth_2 domain-containing protein n=1 Tax=Rubricoccus marinus TaxID=716817 RepID=A0A259TYX9_9BACT) HSP 1 Score: 161 bits (408), Expect = 9.540e-45 Identity = 116/304 (38.16%), Postives = 150/304 (49.34%), Query Frame = 1
Query: 22 QVLHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNKPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKD-KSILLHASELAVPHPTRPGEAVRMRAPPPDCWAE 930
++L +DN +L + KPAG+LSQGD TGD DV ++ +++ NKPG FV +V RLDRP SGVM +ARTSKAA+RL+ FR R SVEK Y A+V G+L GSG ED L F + + G R R++ T G+++AVLEW A+ + R TLVR+ L TGR HQ+R QL G+GHPIVGD+RY + PL D SI LHA+ LA+ HPT+ R A PP W E
Sbjct: 4 EILFLDNHLLVVAKPAGMLSQGDSTGDRDVANWAKAFLKREFNKPGNVFVGLVQRLDRPA---------SGVMVLARTSKAASRLTEQFRKR-SVEKVYLALVEGKLEGSGRLEDWL---FKTHDTETGTRVKRVSST-----------------------TSGAKKAVLEWRALATV----------------RGRTLVRVVLETGRPHQVRVQLGGIGHPIVGDLRY--------------------------------AAPVPLGDGHSIALHAAHLALDHPTQKDRR-RFTAAPPPAWGE 222
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: A0A800M4B4_9BACT (RluA family pseudouridine synthase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A800M4B4_9BACT) HSP 1 Score: 151 bits (382), Expect = 6.870e-41 Identity = 107/296 (36.15%), Postives = 145/296 (48.99%), Query Frame = 1
Query: 25 VLHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNKPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRMRAPP 912
VL++DN +L + KPAG+LSQ D TGD+DV+ +++++R +KPG F +VHRLDRP + G M IARTSKAA+RL+ FR R + EK Y A+V G L GSG D L+ RG R+ VR+ GT G++RAV+ W + L + +LV + L TGR HQIR QL+G+GHPIVGD+RYG + + G+ RG I LHA+ L + HPT+ APP
Sbjct: 5 VLYLDNHLLVVAKPAGMLSQADDTGDLDVVTWAKDFLRREFDKPGNVFAGLVHRLDRP---------VGGAMVIARTSKAASRLAEQFRQR-TPEKRYLAMVEGRLDGSGRETDWLLKTRDPK------RGTRVKRVRQ--------------------GTDGAKRAVMTWTSRSVLGT----------------RSLVEVGLETGRAHQIRVQLSGLGHPIVGDLRYGAEAPL---GDGRG----------------------------IALHATHLTIEHPTKRDRRTFTSAPP 217
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: A0A848XZP8_9BACT (RNA pseudouridine synthase n=1 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A848XZP8_9BACT) HSP 1 Score: 149 bits (376), Expect = 3.720e-40 Identity = 106/301 (35.22%), Postives = 144/301 (47.84%), Query Frame = 1
Query: 22 QVLHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNKPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRMRAPPPDCW 924
+VL++DN +L + KP GLL+Q DRTGD D+L + +++ +KPG F+ +VHRLDRP +SGVM +ARTSKAA RLS +FR+R VEK Y A+V G +SG+G RED L+ R+ +V G +RAVL W+A+ G + +LV +KL+TGR HQ+R QLA +G PI+GD RYG L +++ LHA LA HP R E + APPP W
Sbjct: 2 EVLYLDNHLLVVVKPPGLLAQADRTGDTDLLTQGKAFLKEKFDKPGNVFLGLVHRLDRP---------VSGVMVLARTSKAAGRLSKAFRERR-VEKRYLALVEGRMSGAGEREDYLLKEDG-----------RVRIVSADHPKG--------------------KRAVLRWQAL----------------GEEGRLSLVEVKLLTGRAHQVRVQLAALGTPILGDFRYG--------------------------------ATRELDGRNLALHAYRLAFEHPVR-REPLVFTAPPPVSW 212
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: A0A2H5XHX8_9BACT (Ribosomal large subunit pseudouridine synthase D n=2 Tax=Bacteria TaxID=2 RepID=A0A2H5XHX8_9BACT) HSP 1 Score: 145 bits (366), Expect = 1.860e-38 Identity = 113/304 (37.17%), Postives = 147/304 (48.36%), Query Frame = 1
Query: 13 DATQVLHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNKPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRMRAPPPDCW 924
+A VL+ DN +L INKPAGL SQGDR+G VL+L++ ++++ +KPG ++ +VHRLD P +SGVM +ARTSKAAARL FRDR +V+KTY A+V GEL G GT ED + P G M +V ES G +RAVL W+A L S N TL+R+ TGRKHQIR QLA G+PI+GD RY R + + LHA +L + HPT+ + APPP W
Sbjct: 9 EALPVLYYDNHLLVINKPAGLRSQGDRSGAPTVLSLAKAWLKMQCHKPGNVYLGLVHRLDAP---------VSGVMVLARTSKAAARLMQQFRDR-TVQKTYLALVEGELEGGGTWEDYVAPA-----------GESMRLVPESHPWG--------------------RRAVLHWQA---LLSRNGL-------------TLLRLVPETGRKHQIRVQLAFRGYPILGDRRYRSRRAFV--------------------------------PHQLALHAWQLQLTHPTQ-RIPMAWSAPPPVTW 222
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: A0A1M6P7L7_9BACT (Ribosomal large subunit pseudouridine synthase D n=1 Tax=Rhodothermus profundi TaxID=633813 RepID=A0A1M6P7L7_9BACT) HSP 1 Score: 144 bits (364), Expect = 3.590e-38 Identity = 110/300 (36.67%), Postives = 141/300 (47.00%), Query Frame = 1
Query: 25 VLHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNKPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRMRAPPPDCW 924
VL++DN +L +NKPAGL SQGDR+G VL+L + ++ NKPG ++ +VHRLD P +SGVM +ARTSKAAARL FR+R +VEK Y A+V GEL G G ED + P M +V A +RAVL WEA+ TLVR+ TGRKHQIR QLA G+P++GD RY R L+P + LHA +L+V HPTR E ++ AP P CW
Sbjct: 9 VLYLDNHLLVVNKPAGLRSQGDRSGAPTVLSLGKALIKERFNKPGNVYLGLVHRLDAP---------VSGVMVLARTSKAAARLMQQFRER-TVEKIYLALVEGELEGEGVWEDFIAPARD-----------HMRLVS--------------------ADHPWGKRAVLRWEALMTRNGL----------------TLVRLIPETGRKHQIRVQLAFRGYPVLGDRRYRARR-----------------------------WLAP---GQMALHAWKLSVTHPTR-RERMQWTAPVPSCW 218
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: A0A271J2Z8_9BACT (PseudoU_synth_2 domain-containing protein n=1 Tax=Rubrivirga marina TaxID=1196024 RepID=A0A271J2Z8_9BACT) HSP 1 Score: 141 bits (355), Expect = 5.890e-37 Identity = 105/302 (34.77%), Postives = 145/302 (48.01%), Query Frame = 1
Query: 28 LHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNKPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRMRAPPPDCWAEL 933
L++DN +L ++KP GLL+Q DRTGD D+++L++ Y++ +KPG FV +VHRLDRP SGVM +ARTSKAA+RLS FR R +K Y AVV G+ G + + + ++GG S G QRA L + + D +LV ++L+TGRKHQIRAQLA +G PI+GD RYG ++ + + RG + LHA L V HPT+ E V + APPP+ WA L
Sbjct: 4 LYLDNHLLAVSKPPGLLTQADRTGDPDLVSLAKAYLKERFDKPGNVFVGLVHRLDRPA---------SGVMMLARTSKAASRLSDQFRRRVP-QKRYLAVVEGDPGDGGAWTERVDAI---------------------------DKGGGGSVDVVPVGE--GQRAALRYRTL----------------ARDSARSLVEVELLTGRKHQIRAQLAELGAPILGDFRYGNQTPFA---DGRG----------------------------VALHAYRLVVEHPTK-REPVTVVAPPPEAWAGL 218
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: A0A7Y2GAW4_9BACT (RNA pseudouridine synthase n=1 Tax=Rhodothermales bacterium TaxID=2306054 RepID=A0A7Y2GAW4_9BACT) HSP 1 Score: 140 bits (354), Expect = 1.080e-36 Identity = 109/307 (35.50%), Postives = 141/307 (45.93%), Query Frame = 1
Query: 4 PSFDATQVLHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNKPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRMRAPPPDCW 924
P+ + VL+ DN +L + KPAG+ SQ DRTGD D+L + Y++ +KPG F+ + HRLDRP SGVM +ARTSKAA+RL F DRD VEK Y A+V G + G GT E G R VAA EEG +Q A L+WE + T+V ++L TGRKHQIR QLA +GHPIVGD+RYG EF+ +++ LH L + HPT G A+ +A PP W
Sbjct: 2 PTPFSEYVLYCDNHLLVVCKPAGMPSQRDRTGDPDLLTAGKGYLKEKFDKPGRVFLGLAHRLDRPA---------SGVMVLARTSKAASRLGRQFLDRD-VEKQYVALVEGSVVGQGTTE----------------AGYLKKSERGVVAASRGEEG--------------AQYAELDWEKVKETARG----------------TIVNVRLKTGRKHQIRHQLARIGHPIVGDMRYG----------------------ATREFD----------GRNLALHCYLLTIDHPTL-GHAMSWQALPPLSW 219
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Match: A0A3N1UFZ4_9DELT (23S rRNA pseudouridine1911/1915/1917 synthase n=1 Tax=Desulfosoma caldarium TaxID=610254 RepID=A0A3N1UFZ4_9DELT) HSP 1 Score: 139 bits (351), Expect = 6.680e-36 Identity = 109/300 (36.33%), Postives = 147/300 (49.00%), Query Frame = 1
Query: 25 VLHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNKPGEAFVAMVHRLDRPGKTTKIYALMSGVMCIARTSKAAARLSASFRDRDSVEKTYYAVVTGELSGSGTREDLLVPVFSSVNGAKGVRGPRMTVVRESVAAGAAEEGGSRSAGRAEAGTKGSQRAVLEWEAIHNLTSANAKLCHPTGGGADRPHTLVRIKLITGRKHQIRAQLAGMGHPIVGDVRYGGRSSVSYRGESRGSRNGKDRVEVMEEFETGSSGLSPLKDKSILLHASELAVPHPTRPGEAVRMRAPPPDCW 924
VLH+DN +L + KPAGLL QGD +GD+ +L L+R++++ KPG FV +VHRLDRP +SG++ +ARTSKAA+RLSA FR+ + +K Y AVV G S + + V+G ++R+ S+S T G+QRA L + + TL+ + L TGRKHQIRAQLA G PIVGDVRYG + + YR SI LHA +L +PHPT+ GEAV + P P W
Sbjct: 32 VLHVDNHLLAVYKPAGLLVQGDPSGDLSLLDLARKWIKERYKKPGNVFVGLVHRLDRP---------VSGLVLLARTSKAASRLSAVFRE-NRAQKIYLAVVEGRPSRA---------CATLVHG----------LIRQE----------SKSVAVLPVKTPGTQRAELHYRTV----------------AFSDQRTLLAVHLKTGRKHQIRAQLAHEGCPIVGDVRYGAPTPLPYR--------------------------------SIALHAWKLTLPHPTK-GEAVEISCPLPLNW 243 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1979.5039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1979.5039.1 >prot_H-paniculata_contig1979.5039.1 ID=prot_H-paniculata_contig1979.5039.1|Name=mRNA_H-paniculata_contig1979.5039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=313bp RPSFDATQVLHMDNQMLWINKPAGLLSQGDRTGDVDVLALSREYVRVTTNback to top mRNA from alignment at H-paniculata_contig1979:986..2731+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1979.5039.1 ID=mRNA_H-paniculata_contig1979.5039.1|Name=mRNA_H-paniculata_contig1979.5039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1746bp|location=Sequence derived from alignment at H-paniculata_contig1979:986..2731+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1979:986..2731+ >mRNA_H-paniculata_contig1979.5039.1 ID=mRNA_H-paniculata_contig1979.5039.1|Name=mRNA_H-paniculata_contig1979.5039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at H-paniculata_contig1979:986..2731+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |