Gvermi13700.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi13700.t1
Unique NameGvermi13700.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length270
Homology
BLAST of Gvermi13700.t1 vs. uniprot
Match: A0A1Z5KE40_FISSO (Splicing factor 3B subunit 2 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KE40_FISSO)

HSP 1 Score: 199 bits (507), Expect = 1.100e-56
Identity = 97/148 (65.54%), Postives = 113/148 (76.35%), Query Frame = 0
Query:  121 LICPSAVPGTVPVPRHWGRKRKYLQGKRGFEKPPFQLPDFLAATGIGELRDAVASSQADQSAKQRNRARTAPKLGAVDVDYRTLHDAFFKQQTKPVAMTTFGDLYYEGKECQASSKAHRAGHLSDALRQALGMETTGGGSFSGRTTPP 268
            LI   AVPGTVPV RHWGRKRKYLQGKRGFEKPPFQLPDF+  TGI ++RD+VA+ +A  SAKQ+NRAR APK+GA+DVDYRTLHDAFFK QTKP ++T FGD YYEGKE + + K    G LS  LR+ALGM +         T+PP
Sbjct:  187 LIELKAVPGTVPVSRHWGRKRKYLQGKRGFEKPPFQLPDFIVRTGITDIRDSVAADEAKMSAKQKNRARVAPKMGAIDVDYRTLHDAFFKYQTKPKSLTKFGDTYYEGKELEVNIKIKPGGPLSTKLREALGMTS--------ETSPP 326          
BLAST of Gvermi13700.t1 vs. uniprot
Match: A0A7S1DEI7_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DEI7_CYCTE)

HSP 1 Score: 190 bits (482), Expect = 5.630e-56
Identity = 88/133 (66.17%), Postives = 104/133 (78.20%), Query Frame = 0
Query:  121 LICPSAVPGTVPVPRHWGRKRKYLQGKRGFEKPPFQLPDFLAATGIGELRDAVASSQADQSAKQRNRARTAPKLGAVDVDYRTLHDAFFKQQTKPVAMTTFGDLYYEGKECQASSKAHRAGHLSDALRQALGM 253
            LI    + GTVPVPRHWGRKRKYLQGKRGFEKPPFQLPDF+  TGI  +RD +A +++ QSAKQ+NR+R APK+GA+DVDYRTL++AFFK QTKP  MT  GDLYYEGKE +  +K      LS  LR+ALGM
Sbjct:   32 LIYLKGISGTVPVPRHWGRKRKYLQGKRGFEKPPFQLPDFIVKTGITAIRDTLADNESSQSAKQKNRSRVAPKMGAMDVDYRTLYEAFFKHQTKPSTMTRMGDLYYEGKELETRNKIQPGAPLSPQLREALGM 164          
BLAST of Gvermi13700.t1 vs. uniprot
Match: B7GAP7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAP7_PHATC)

HSP 1 Score: 196 bits (499), Expect = 7.320e-56
Identity = 97/171 (56.73%), Postives = 113/171 (66.08%), Query Frame = 0
Query:  114 SKRKIRDLICPS-------------------------------AVPGTVPVPRHWGRKRKYLQGKRGFEKPPFQLPDFLAATGIGELRDAVASSQADQSAKQRNRARTAPKLGAVDVDYRTLHDAFFKQQTKPVAMTTFGDLYYEGKECQASSKAHRAGHLSDALRQALGM 253
            SKRK+R+L+ PS                               A  GTVPVPRHWGRKRKYLQGKRGFEKPPFQLPDF+  TGI E+RD V  +++D SAKQ+NR+R APK+GA+DVDY+TLHDAFFK QTKP  +T FGD YYEGKE +  +K    G LS  LR ALGM
Sbjct:  113 SKRKLRELLRPSVAELKRRVLRPDLVEAHDVTAADPDFLIELKAAAGTVPVPRHWGRKRKYLQGKRGFEKPPFQLPDFIIKTGITEIRDTVMEAESDMSAKQKNRSRVAPKMGAIDVDYKTLHDAFFKHQTKPANLTKFGDTYYEGKELEVQAKVQPGGPLSQKLRDALGM 283          
BLAST of Gvermi13700.t1 vs. uniprot
Match: A0A7S3P7K2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7K2_9STRA)

HSP 1 Score: 183 bits (465), Expect = 7.610e-51
Identity = 90/148 (60.81%), Postives = 110/148 (74.32%), Query Frame = 0
Query:  121 LICPSAVPGTVPVPRHWGRKRKYLQGKRGFEKPPFQLPDFLAATGIGELRDAVASSQADQSAKQRNRARTAPKLGAVDVDYRTLHDAFFKQQTKPVAMTTFGDLYYEGKECQASSKAHRAGHLSDALRQALGMETTGGGSFSGRTTPP 268
            LI   +VPGTVPVPR+WGRKRKYLQGKRGFEKPPF+LPDF+  TGI E+RD+ A+ Q   + +Q+NRAR + K GAVDVDYRTL+DAFFK QTKP  +T FGD+YYEGKE +  + + R G LS  LR+ALGM +         T+PP
Sbjct:  155 LIELKSVPGTVPVPRNWGRKRKYLQGKRGFEKPPFKLPDFILKTGIAEVRDSAAADQEKMTIRQKNRARVSGKTGAVDVDYRTLYDAFFKHQTKPTNLTQFGDMYYEGKELEVDT-SRRPGELSAKLREALGMAS--------ETSPP 293          
BLAST of Gvermi13700.t1 vs. uniprot
Match: A0A7S2LBG3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LBG3_9STRA)

HSP 1 Score: 176 bits (447), Expect = 6.810e-49
Identity = 85/134 (63.43%), Postives = 101/134 (75.37%), Query Frame = 0
Query:  121 LICPSAVPGTVPVPRHWGRKRKYLQGKRGFEKPPFQLPDFLAATGIGELRDAVASSQADQSAKQRNRARTAPKLGAVDVDYRTLHDAFFKQQTKPVAMTTFGDLYYEGKECQ-ASSKAHRAGHLSDALRQALGM 253
            LI    +PGTVPVPRHWGRKRKYLQGKRG EKPPF LPDF+  TGI ++RDA A   A  S KQ+NRAR + K   VDVDYRTL++AFF+ QTKP ++T FGDLYYEG+E + A S   R G +S+ LR+ALGM
Sbjct:   90 LIYLKGIPGTVPVPRHWGRKRKYLQGKRGVEKPPFALPDFIVKTGICDVRDATAEDDAKMSVKQKNRARVSGKGAGVDVDYRTLYEAFFQHQTKPESLTDFGDLYYEGREYETARSSNFRPGFMSERLREALGM 223          
BLAST of Gvermi13700.t1 vs. uniprot
Match: K0SIL6_THAOC (PSP domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SIL6_THAOC)

HSP 1 Score: 178 bits (452), Expect = 2.590e-48
Identity = 84/134 (62.69%), Postives = 100/134 (74.63%), Query Frame = 0
Query:  121 LICPSAVPGTVPVPRHWGRKRKYLQGKRGFEKPPFQLPDFLAATGIGELRDAVASSQADQSAKQRNRARTAPKLGAVDVDYRTLHDAFFKQQTKPVAMTTFGDLYYEGKECQAS-SKAHRAGHLSDALRQALGM 253
            L+    +P TVPVPRHWGRKRKYLQGKRG EKPPF LPDF+  TGI ++RDA    +A QS KQ+NR R + +   VDVDYRTL++AFF  QTKP  MT FGDLYYEGKE + + S   R GH+SDAL++ALGM
Sbjct:  179 LVYLKGIPNTVPVPRHWGRKRKYLQGKRGIEKPPFGLPDFIVKTGICDVRDATKEDEAKQSVKQKNRMRVSGRGAGVDVDYRTLYEAFFHHQTKPAGMTGFGDLYYEGKEFETTKSTRFRVGHMSDALKEALGM 312          
BLAST of Gvermi13700.t1 vs. uniprot
Match: A0A448Z0H3_9STRA (PSP domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0H3_9STRA)

HSP 1 Score: 172 bits (435), Expect = 5.530e-46
Identity = 83/148 (56.08%), Postives = 103/148 (69.59%), Query Frame = 0
Query:  121 LICPSAVPGTVPVPRHWGRKRKYLQGKRGFEKPPFQLPDFLAATGIGELRDAVASSQADQSAKQRNRARTAPKLGAVDVDYRTLHDAFFKQQTKPVAMTTFGDLYYEGKECQASSKAHRAGHLSDALRQALGMETTGGGSFSGRTTPP 268
            LI   ++P T PVP HWGRKRKYLQGKRG +K P+QLPDF+  TGI ++RD     +A QS KQ+NR R  PK+GA+DVDY+ L++AFFK QTKP  +T++GDLYYEGKE + S+     G  S ALR ALGM    G + SG   PP
Sbjct:  213 LIALKSIPHTTPVPFHWGRKRKYLQGKRGLDKVPYQLPDFIIKTGIADVRDTAMEDEAAQSIKQKNRGRVNPKMGAMDVDYKVLYEAFFKYQTKPTGLTSWGDLYYEGKETENSTDIKPGGPFSKALRIALGM----GDNPSGNIPPP 356          
BLAST of Gvermi13700.t1 vs. uniprot
Match: B8CCL9_THAPS (PSP domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCL9_THAPS)

HSP 1 Score: 169 bits (429), Expect = 2.820e-45
Identity = 81/134 (60.45%), Postives = 99/134 (73.88%), Query Frame = 0
Query:  121 LICPSAVPGTVPVPRHWGRKRKYLQGKRGFEKPPFQLPDFLAATGIGELRDAVASSQADQSAKQRNRARTAPKLGAVDVDYRTLHDAFFKQQTKPVAMTTFGDLYYEGKECQASSKAH-RAGHLSDALRQALGM 253
            LI    V GTVPVPRHWGRKRKYLQGKRG EKPPF LPDF+  TGI ++R A A  +   S KQ+NR R + + G VDVDYRTL++AFF+ QTKP  +T FGDLYYEGKE + +   + R G++S+ LR+ALGM
Sbjct:  198 LIYLKGVEGTVPVPRHWGRKRKYLQGKRGVEKPPFALPDFIVKTGICDVRSATAEDENKMSIKQKNRLRVSGRGGGVDVDYRTLYEAFFQHQTKPEKLTQFGDLYYEGKEYETTKSTNFRPGYMSERLREALGM 331          
BLAST of Gvermi13700.t1 vs. uniprot
Match: A0A1E7EW45_9STRA (DUF382-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EW45_9STRA)

HSP 1 Score: 161 bits (407), Expect = 5.280e-45
Identity = 80/148 (54.05%), Postives = 101/148 (68.24%), Query Frame = 0
Query:  121 LICPSAVPGTVPVPRHWGRKRKYLQGKRGFEKPPFQLPDFLAATGIGELRDAVASSQADQSAKQRNRARTAPKLGAVDVDYRTLHDAFFKQQTKPVAMTTFGDLYYEGKECQASSKAHRAGHLSDALRQALGMETTGGGSFSGRTTPP 268
            LI   A+P T PVP HWGRKRKYLQGKRG EK  F+LPDF+  TGI  +RD     +  Q+AKQ NR R  PK+G++DVDY+ L++AFFK QTKP  +T++GDLYYEGKE + ++     G LS +L+ ALGM    GGS   +  PP
Sbjct:   40 LIALKAIPHTTPVPFHWGRKRKYLQGKRGLEKTLFKLPDFIIKTGIANIRDTAMEEEEKQNAKQTNRGRVNPKMGSMDVDYKILYEAFFKYQTKPKNLTSWGDLYYEGKELETNTDIKPGGTLSKSLQIALGM----GGS---KNAPP 180          
BLAST of Gvermi13700.t1 vs. uniprot
Match: A0A7S4AFR5_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AFR5_9STRA)

HSP 1 Score: 169 bits (428), Expect = 6.020e-45
Identity = 87/186 (46.77%), Postives = 111/186 (59.68%), Query Frame = 0
Query:  114 SKRKIRDLICPS-------------------------------AVPGTVPVPRHWGRKRKYLQGKRGFEKPPFQLPDFLAATGIGELRDAVASSQADQSAKQRNRARTAPKLGAVDVDYRTLHDAFFKQQTKPVAMTTFGDLYYEGKECQASSKAHRAGHLSDALRQALGMETTGGGSFSGRTTPP 268
            SKRK+R+L+ PS                               ++  T PVP HWGRKRKYLQGKRG +K P+QLPDF+  TGI ++RD     +A+QS KQ+NR RT PK+GA+DVDY+ L++AFFK QTKP  +T++GDLYYEGKE + S+     G  S ALR ALGM      + S    PP
Sbjct:  171 SKRKLRELVRPSVADLKRRVERPDLVEAHDVTAADPDFLIELKSISHTTPVPFHWGRKRKYLQGKRGLDKVPYQLPDFIIKTGIADVRDTAMEDEANQSIKQKNRGRTNPKMGAMDVDYKVLYEAFFKYQTKPTDLTSWGDLYYEGKELENSTDIKPGGPFSKALRIALGMGDNSDNNNSVNNIPP 356          
The following BLAST results are available for this feature:
BLAST of Gvermi13700.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z5KE40_FISSO1.100e-5665.54Splicing factor 3B subunit 2 n=2 Tax=Fistulifera s... [more]
A0A7S1DEI7_CYCTE5.630e-5666.17Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
B7GAP7_PHATC7.320e-5656.73Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S3P7K2_9STRA7.610e-5160.81Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2LBG3_9STRA6.810e-4963.43Hypothetical protein (Fragment) n=2 Tax=Skeletonem... [more]
K0SIL6_THAOC2.590e-4862.69PSP domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A448Z0H3_9STRA5.530e-4656.08PSP domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
B8CCL9_THAPS2.820e-4560.45PSP domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A1E7EW45_9STRA5.280e-4554.05DUF382-domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S4AFR5_9STRA6.020e-4546.77Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 27..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 255..269
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 244..269
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..43
NoneNo IPR availablePANTHERPTHR12785SPLICING FACTOR 3Bcoord: 126..255
NoneNo IPR availablePANTHERPTHR12785:SF6SPLICING FACTOR 3B SUBUNIT 2coord: 126..255
IPR007180Domain of unknown function DUF382PFAMPF04037DUF382coord: 128..230
e-value: 2.1E-41
score: 141.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_774contigScGOVlb_774:1691..2590 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13700.t1Gvermi13700.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_774 1691..2590 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi13700.t1 ID=Gvermi13700.t1|Name=Gvermi13700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=270bp
XRQPSAIEKSASERKRKTEDDGGAATKKEVNEKEEEEEKQVDHVEIESLA
EVPAEADAMEAVRKFQARAAAAAAVAVVSDEDGAVTVAAGGGGGTTRDSH
EYQQQQQQQDQQWSKRKIRDLICPSAVPGTVPVPRHWGRKRKYLQGKRGF
EKPPFQLPDFLAATGIGELRDAVASSQADQSAKQRNRARTAPKLGAVDVD
YRTLHDAFFKQQTKPVAMTTFGDLYYEGKECQASSKAHRAGHLSDALRQA
LGMETTGGGSFSGRTTPPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007180DUF382