Gvermi13700.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13700.t1
Unique NameGvermi13700.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length270
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_774contigScGOVlb_774:1691..2590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr49469
PFAMsDUF382,PSP
Max annot lvl2836|Bacillariophyta
KEGG koko:K12829
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Evalue1.27e-56
EggNOG OGsCOG5182@1|root,KOG2330@2759|Eukaryota,2XB4Y@2836|Bacillariophyta
Descriptionproline-rich domain in spliceosome associated proteins
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13700Gvermi13700Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_774 1691..2590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13700.t1Gvermi13700.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_774 1691..2590 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13700.t1.stop1Gvermi13700.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_774 1691..1693 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13700.t1.CDS1Gvermi13700.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_774 1691..2125 -
Gvermi13700.t1.CDS2Gvermi13700.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_774 2218..2590 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13700.t1.exon1Gvermi13700.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_774 1691..2125 -
Gvermi13700.t1.exon2Gvermi13700.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_774 2218..2590 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13700.t1.intron1Gvermi13700.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_774 2126..2217 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13700.t1 ID=Gvermi13700.t1|Name=Gvermi13700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=270bp
XRQPSAIEKSASERKRKTEDDGGAATKKEVNEKEEEEEKQVDHVEIESLA
EVPAEADAMEAVRKFQARAAAAAAVAVVSDEDGAVTVAAGGGGGTTRDSH
EYQQQQQQQDQQWSKRKIRDLICPSAVPGTVPVPRHWGRKRKYLQGKRGF
EKPPFQLPDFLAATGIGELRDAVASSQADQSAKQRNRARTAPKLGAVDVD
YRTLHDAFFKQQTKPVAMTTFGDLYYEGKECQASSKAHRAGHLSDALRQA
LGMETTGGGSFSGRTTPPR*
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spliced messenger RNA

>Gvermi13700.t1 ID=Gvermi13700.t1|Name=Gvermi13700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=808bp|location=Sequence derived from alignment at ScGOVlb_774:1691..2590- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TCGACAGCCGAGCGCAATCGAAAAAAGTGCGAGCGAGAGAAAAAGGAAAA
CGGAAGATGATGGAGGTGCTGCAACGAAGAAGGAGGTGAACGAGAAGGAG
GAGGAAGAGGAGAAGCAAGTGGATCATGTTGAAATTGAATCTTTGGCGGA
GGTCCCTGCCGAAGCCGACGCCATGGAAGCTGTTCGCAAATTCCAAGCCC
GCGCTGCCGCCGCAGCTGCCGTTGCTGTTGTGAGCGACGAAGACGGTGCT
GTTACAGTTGCTGCAGGAGGTGGCGGTGGAACGACTCGCGATAGTCACGA
ATACCAACAACAACAACAACAACAAGACCAGCAGTGGAGCAAGCGCAAGA
TTCGCGATTTGATTTGCCCCAGCGCCGTGCCGGGCACGGTGCCGGTGCCG
CGCCACTGGGGTCGCAAGCGCAAGTACCTGCAGGGCAAGCGCGGTTTTGA
AAAACCGCCCTTTCAATTGCCCGACTTTCTCGCGGCCACTGGAATTGGCG
AATTGCGCGACGCTGTTGCGAGCAGCCAGGCCGACCAATCGGCCAAGCAA
AGGAACCGCGCGCGGACCGCCCCCAAGCTCGGAGCGGTGGATGTGGATTA
CCGGACGCTCCACGACGCCTTTTTCAAGCAGCAAACCAAACCCGTTGCAA
TGACAACCTTTGGTGACTTGTACTATGAAGGCAAGGAATGCCAAGCGTCA
AGCAAGGCGCACCGCGCGGGGCACTTGAGCGATGCGCTGCGGCAAGCGCT
CGGCATGGAAACAACAGGCGGCGGCTCTTTTTCTGGACGCACCACGCCGC
CACGGTGA
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protein sequence of Gvermi13700.t1

>Gvermi13700.t1 ID=Gvermi13700.t1|Name=Gvermi13700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=270bp
XRQPSAIEKSASERKRKTEDDGGAATKKEVNEKEEEEEKQVDHVEIESLA
EVPAEADAMEAVRKFQARAAAAAAVAVVSDEDGAVTVAAGGGGGTTRDSH
EYQQQQQQQDQQWSKRKIRDLICPSAVPGTVPVPRHWGRKRKYLQGKRGF
EKPPFQLPDFLAATGIGELRDAVASSQADQSAKQRNRARTAPKLGAVDVD
YRTLHDAFFKQQTKPVAMTTFGDLYYEGKECQASSKAHRAGHLSDALRQA
LGMETTGGGSFSGRTTPPR*
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mRNA from alignment at ScGOVlb_774:1691..2590-

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13700.t1 ID=Gvermi13700.t1|Name=Gvermi13700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=900bp|location=Sequence derived from alignment at ScGOVlb_774:1691..2590- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TCGACAGCCGAGCGCAATCGAAAAAAGTGCGAGCGAGAGAAAAAGGAAAA
CGGAAGATGATGGAGGTGCTGCAACGAAGAAGGAGGTGAACGAGAAGGAG
GAGGAAGAGGAGAAGCAAGTGGATCATGTTGAAATTGAATCTTTGGCGGA
GGTCCCTGCCGAAGCCGACGCCATGGAAGCTGTTCGCAAATTCCAAGCCC
GCGCTGCCGCCGCAGCTGCCGTTGCTGTTGTGAGCGACGAAGACGGTGCT
GTTACAGTTGCTGCAGGAGGTGGCGGTGGAACGACTCGCGATAGTCACGA
ATACCAACAACAACAACAACAACAAGACCAGCAGTGGAGCAAGCGCAAGA
TTCGCGATTTGATTTGCCCCAGCGTGGCCAACCTCAAGCGCCGCGTCCAG
CGCCCCGATCTCGTGGAAGCGCACGACATTACGGCGCCCGACCCGGAATT
CTCATTCTGCTCAAGGCCGTGCCGGGCACGGTGCCGGTGCCGCGCCACTG
GGGTCGCAAGCGCAAGTACCTGCAGGGCAAGCGCGGTTTTGAAAAACCGC
CCTTTCAATTGCCCGACTTTCTCGCGGCCACTGGAATTGGCGAATTGCGC
GACGCTGTTGCGAGCAGCCAGGCCGACCAATCGGCCAAGCAAAGGAACCG
CGCGCGGACCGCCCCCAAGCTCGGAGCGGTGGATGTGGATTACCGGACGC
TCCACGACGCCTTTTTCAAGCAGCAAACCAAACCCGTTGCAATGACAACC
TTTGGTGACTTGTACTATGAAGGCAAGGAATGCCAAGCGTCAAGCAAGGC
GCACCGCGCGGGGCACTTGAGCGATGCGCTGCGGCAAGCGCTCGGCATGG
AAACAACAGGCGGCGGCTCTTTTTCTGGACGCACCACGCCGCCACGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_774:1691..2590-

>Gvermi13700.t1 ID=Gvermi13700.t1|Name=Gvermi13700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=808bp|location=Sequence derived from alignment at ScGOVlb_774:1691..2590- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TCGACAGCCGAGCGCAATCGAAAAAAGTGCGAGCGAGAGAAAAAGGAAAA
CGGAAGATGATGGAGGTGCTGCAACGAAGAAGGAGGTGAACGAGAAGGAG
GAGGAAGAGGAGAAGCAAGTGGATCATGTTGAAATTGAATCTTTGGCGGA
GGTCCCTGCCGAAGCCGACGCCATGGAAGCTGTTCGCAAATTCCAAGCCC
GCGCTGCCGCCGCAGCTGCCGTTGCTGTTGTGAGCGACGAAGACGGTGCT
GTTACAGTTGCTGCAGGAGGTGGCGGTGGAACGACTCGCGATAGTCACGA
ATACCAACAACAACAACAACAACAAGACCAGCAGTGGAGCAAGCGCAAGA
TTCGCGATTTGATTTGCCCCAGCGCCGTGCCGGGCACGGTGCCGGTGCCG
CGCCACTGGGGTCGCAAGCGCAAGTACCTGCAGGGCAAGCGCGGTTTTGA
AAAACCGCCCTTTCAATTGCCCGACTTTCTCGCGGCCACTGGAATTGGCG
AATTGCGCGACGCTGTTGCGAGCAGCCAGGCCGACCAATCGGCCAAGCAA
AGGAACCGCGCGCGGACCGCCCCCAAGCTCGGAGCGGTGGATGTGGATTA
CCGGACGCTCCACGACGCCTTTTTCAAGCAGCAAACCAAACCCGTTGCAA
TGACAACCTTTGGTGACTTGTACTATGAAGGCAAGGAATGCCAAGCGTCA
AGCAAGGCGCACCGCGCGGGGCACTTGAGCGATGCGCTGCGGCAAGCGCT
CGGCATGGAAACAACAGGCGGCGGCTCTTTTTCTGGACGCACCACGCCGC
CACGGTGA
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