Ggra10539.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000904_pilon	contig	tig00000904_pilon:55445..56720 -

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10539	Ggra10539	Gracilaria gracilis GNS1m male	gene	tig00000904_pilon 55445..56720 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10539.t1	Ggra10539.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000904_pilon 55445..56720 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10539.t1.stop1	Ggra10539.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000904_pilon 55445..55447 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10539.t1.CDS1	Ggra10539.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000904_pilon 55445..55576 -
Ggra10539.t1.CDS2	Ggra10539.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000904_pilon 55741..55759 -
Ggra10539.t1.CDS3	Ggra10539.t1.CDS3	Gracilaria gracilis GNS1m male	CDS	tig00000904_pilon 55810..56720 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10539.t1.exon1	Ggra10539.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000904_pilon 55445..55576 -
Ggra10539.t1.exon2	Ggra10539.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000904_pilon 55741..55759 -
Ggra10539.t1.exon3	Ggra10539.t1.exon3	Gracilaria gracilis GNS1m male	exon	tig00000904_pilon 55810..56720 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10539.t1.intron1	Ggra10539.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000904_pilon 55577..55740 -
Ggra10539.t1.intron2	Ggra10539.t1.intron2	Gracilaria gracilis GNS1m male	intron	tig00000904_pilon 55760..55809 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10539.t1.start1	Ggra10539.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000904_pilon 56718..56720 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000904_pilon:55445..56720-
coding sequence from alignment at tig00000904_pilon:55445..56720-

mRNA sequence

>Ggra10539.t1 ID=Ggra10539.t1|Name=Ggra10539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp
MVTGTITESRHTPDRTTYISSSCDRPVPSIQPSVSFGPSGIPKTSSITRS
PLAFHSEDGDFGLLDIFVDSKDFELHETVRSLRFTAAATSISNLFPPTPR
STITLPPSSISEFNQLECGSGVKVVEELDDHLGRNLKQAGKSTATPMEVQ
QASEEDAAPAADIAKPLSPEAIAKARCQLDAFMSEPVTPPSAEPRDISET
ESRRPFSFSPRSRKIFEKLSIRRERKLPSRQAEGDTLETDDDEAASSGPQ
PLSKMISGLERLFSRISSTSKPAEQNGHIPSAPKPSSASPAASNPTAQRR
MKSILTSYCTLQSHTFQSPNTASQIALIFPELSLKVHQLFLITLSNTATP
SVR*

spliced messenger RNA

>Ggra10539.t1 ID=Ggra10539.t1|Name=Ggra10539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00000904_pilon:55445..56720- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAACCGGCACAATCACTGAAAGTCGACATACTCCCGACAGAACAAC
ATATATCTCATCTTCTTGTGACCGTCCCGTTCCCAGCATACAACCATCCG
TGTCATTTGGTCCAAGCGGTATCCCGAAGACGTCGTCAATTACACGTTCT
CCTTTGGCTTTTCATTCGGAAGATGGTGACTTCGGTTTGCTTGACATATT
CGTCGACAGCAAGGACTTTGAATTGCACGAAACGGTGAGAAGTCTTAGGT
TCACCGCTGCTGCCACAAGTATTAGCAATCTATTTCCGCCAACGCCAAGG
TCCACCATCACATTACCACCAAGCTCCATTAGCGAGTTTAATCAATTGGA
ATGTGGCAGTGGCGTGAAAGTCGTAGAGGAACTGGACGACCATCTTGGCC
GCAATCTCAAACAGGCAGGGAAGTCGACTGCCACGCCAATGGAGGTGCAG
CAAGCAAGCGAAGAAGATGCAGCTCCAGCTGCAGACATTGCAAAGCCTCT
CAGTCCAGAGGCAATAGCGAAAGCTCGATGCCAGCTTGACGCCTTTATGA
GTGAGCCCGTCACCCCACCTTCTGCAGAACCAAGGGATATCTCTGAGACC
GAAAGTCGTAGACCATTTTCATTCTCGCCACGTTCCCGAAAGATATTTGA
GAAACTATCTATTCGGCGAGAGAGAAAGCTTCCGTCGAGACAAGCGGAGG
GGGATACCCTGGAAACCGATGATGATGAGGCTGCATCTTCTGGACCTCAG
CCCTTGTCCAAAATGATCTCTGGGCTTGAACGTTTGTTCTCGAGGATTTC
CAGTACATCCAAACCTGCAGAGCAGAATGGTCATATCCCCTCGGCGCCCA
AGCCTTCATCGGCATCGCCAGCGGCCTCGAACCCCACTGCACAGAGGAGA
ATGAAGTCGATATTGACCTCCTACTGTACGCTGCAATCACATACATTCCA
GTCCCCAAACACGGCTTCCCAAATAGCTCTGATATTCCCAGAGCTTTCGC
TCAAAGTACATCAGCTTTTCTTGATAACTTTGTCTAACACGGCAACTCCT
TCAGTAAGATAG

protein sequence of Ggra10539.t1

>Ggra10539.t1 ID=Ggra10539.t1|Name=Ggra10539.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=354bp
MVTGTITESRHTPDRTTYISSSCDRPVPSIQPSVSFGPSGIPKTSSITRS
PLAFHSEDGDFGLLDIFVDSKDFELHETVRSLRFTAAATSISNLFPPTPR
STITLPPSSISEFNQLECGSGVKVVEELDDHLGRNLKQAGKSTATPMEVQ
QASEEDAAPAADIAKPLSPEAIAKARCQLDAFMSEPVTPPSAEPRDISET
ESRRPFSFSPRSRKIFEKLSIRRERKLPSRQAEGDTLETDDDEAASSGPQ
PLSKMISGLERLFSRISSTSKPAEQNGHIPSAPKPSSASPAASNPTAQRR
MKSILTSYCTLQSHTFQSPNTASQIALIFPELSLKVHQLFLITLSNTATP
SVR*

mRNA from alignment at tig00000904_pilon:55445..56720-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10539.t1 ID=Ggra10539.t1|Name=Ggra10539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1276bp|location=Sequence derived from alignment at tig00000904_pilon:55445..56720- (Gracilaria gracilis GNS1m male)
ATGGTAACCGGCACAATCACTGAAAGTCGACATACTCCCGACAGAACAAC
ATATATCTCATCTTCTTGTGACCGTCCCGTTCCCAGCATACAACCATCCG
TGTCATTTGGTCCAAGCGGTATCCCGAAGACGTCGTCAATTACACGTTCT
CCTTTGGCTTTTCATTCGGAAGATGGTGACTTCGGTTTGCTTGACATATT
CGTCGACAGCAAGGACTTTGAATTGCACGAAACGGTGAGAAGTCTTAGGT
TCACCGCTGCTGCCACAAGTATTAGCAATCTATTTCCGCCAACGCCAAGG
TCCACCATCACATTACCACCAAGCTCCATTAGCGAGTTTAATCAATTGGA
ATGTGGCAGTGGCGTGAAAGTCGTAGAGGAACTGGACGACCATCTTGGCC
GCAATCTCAAACAGGCAGGGAAGTCGACTGCCACGCCAATGGAGGTGCAG
CAAGCAAGCGAAGAAGATGCAGCTCCAGCTGCAGACATTGCAAAGCCTCT
CAGTCCAGAGGCAATAGCGAAAGCTCGATGCCAGCTTGACGCCTTTATGA
GTGAGCCCGTCACCCCACCTTCTGCAGAACCAAGGGATATCTCTGAGACC
GAAAGTCGTAGACCATTTTCATTCTCGCCACGTTCCCGAAAGATATTTGA
GAAACTATCTATTCGGCGAGAGAGAAAGCTTCCGTCGAGACAAGCGGAGG
GGGATACCCTGGAAACCGATGATGATGAGGCTGCATCTTCTGGACCTCAG
CCCTTGTCCAAAATGATCTCTGGGCTTGAACGTTTGTTCTCGAGGATTTC
CAGTACATCCAAACCTGCAGAGCAGAATGGTCATATCCCCTCGGCGCCCA
AGCCTTCATCGGCATCGCCAGCGGCCTCGAACCCCACTGCACAGAGGAGA
ATGAAGTCGATGTTCGCAAAGTGGAGAGGTGAAGTTAGGAAGTTTTTGGA
CAGATTCGTAGATTGACCTCCTACTGTACGGTAAGTGCCGATGGCCAAGT
TTGGGTTTGGCTTACTATGATGATCATCATGATGATCATCATCGCGCGTG
TCGTTTATGACTGCTCATGCAGAAAGAAGATGCCAATGTATTCCTCAGGT
CTAACCCATTCCCAAGTTCGGCGCTCTTCCTAAACAAAACTTAGCTGCAA
TCACATACATTCCAGTCCCCAAACACGGCTTCCCAAATAGCTCTGATATT
CCCAGAGCTTTCGCTCAAAGTACATCAGCTTTTCTTGATAACTTTGTCTA
ACACGGCAACTCCTTCAGTAAGATAG

Coding sequence (CDS) from alignment at tig00000904_pilon:55445..56720-

>Ggra10539.t1 ID=Ggra10539.t1|Name=Ggra10539.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1062bp|location=Sequence derived from alignment at tig00000904_pilon:55445..56720- (Gracilaria gracilis GNS1m male)
ATGGTAACCGGCACAATCACTGAAAGTCGACATACTCCCGACAGAACAAC
ATATATCTCATCTTCTTGTGACCGTCCCGTTCCCAGCATACAACCATCCG
TGTCATTTGGTCCAAGCGGTATCCCGAAGACGTCGTCAATTACACGTTCT
CCTTTGGCTTTTCATTCGGAAGATGGTGACTTCGGTTTGCTTGACATATT
CGTCGACAGCAAGGACTTTGAATTGCACGAAACGGTGAGAAGTCTTAGGT
TCACCGCTGCTGCCACAAGTATTAGCAATCTATTTCCGCCAACGCCAAGG
TCCACCATCACATTACCACCAAGCTCCATTAGCGAGTTTAATCAATTGGA
ATGTGGCAGTGGCGTGAAAGTCGTAGAGGAACTGGACGACCATCTTGGCC
GCAATCTCAAACAGGCAGGGAAGTCGACTGCCACGCCAATGGAGGTGCAG
CAAGCAAGCGAAGAAGATGCAGCTCCAGCTGCAGACATTGCAAAGCCTCT
CAGTCCAGAGGCAATAGCGAAAGCTCGATGCCAGCTTGACGCCTTTATGA
GTGAGCCCGTCACCCCACCTTCTGCAGAACCAAGGGATATCTCTGAGACC
GAAAGTCGTAGACCATTTTCATTCTCGCCACGTTCCCGAAAGATATTTGA
GAAACTATCTATTCGGCGAGAGAGAAAGCTTCCGTCGAGACAAGCGGAGG
GGGATACCCTGGAAACCGATGATGATGAGGCTGCATCTTCTGGACCTCAG
CCCTTGTCCAAAATGATCTCTGGGCTTGAACGTTTGTTCTCGAGGATTTC
CAGTACATCCAAACCTGCAGAGCAGAATGGTCATATCCCCTCGGCGCCCA
AGCCTTCATCGGCATCGCCAGCGGCCTCGAACCCCACTGCACAGAGGAGA
ATGAAGTCGATATTGACCTCCTACTGTACGCTGCAATCACATACATTCCA
GTCCCCAAACACGGCTTCCCAAATAGCTCTGATATTCCCAGAGCTTTCGC
TCAAAGTACATCAGCTTTTCTTGATAACTTTGTCTAACACGGCAACTCCT
TCAGTAAGATAG