Ggra10539.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10539.t1
Unique NameGgra10539.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length354
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:55445..56720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10539Ggra10539Gracilaria gracilis GNS1m malegenetig00000904_pilon 55445..56720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10539.t1Ggra10539.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 55445..56720 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10539.t1.stop1Ggra10539.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 55445..55447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10539.t1.CDS1Ggra10539.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 55445..55576 -
Ggra10539.t1.CDS2Ggra10539.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000904_pilon 55741..55759 -
Ggra10539.t1.CDS3Ggra10539.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000904_pilon 55810..56720 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10539.t1.exon1Ggra10539.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 55445..55576 -
Ggra10539.t1.exon2Ggra10539.t1.exon2Gracilaria gracilis GNS1m maleexontig00000904_pilon 55741..55759 -
Ggra10539.t1.exon3Ggra10539.t1.exon3Gracilaria gracilis GNS1m maleexontig00000904_pilon 55810..56720 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10539.t1.intron1Ggra10539.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000904_pilon 55577..55740 -
Ggra10539.t1.intron2Ggra10539.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000904_pilon 55760..55809 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10539.t1.start1Ggra10539.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 56718..56720 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10539.t1 ID=Ggra10539.t1|Name=Ggra10539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp
MVTGTITESRHTPDRTTYISSSCDRPVPSIQPSVSFGPSGIPKTSSITRS
PLAFHSEDGDFGLLDIFVDSKDFELHETVRSLRFTAAATSISNLFPPTPR
STITLPPSSISEFNQLECGSGVKVVEELDDHLGRNLKQAGKSTATPMEVQ
QASEEDAAPAADIAKPLSPEAIAKARCQLDAFMSEPVTPPSAEPRDISET
ESRRPFSFSPRSRKIFEKLSIRRERKLPSRQAEGDTLETDDDEAASSGPQ
PLSKMISGLERLFSRISSTSKPAEQNGHIPSAPKPSSASPAASNPTAQRR
MKSILTSYCTLQSHTFQSPNTASQIALIFPELSLKVHQLFLITLSNTATP
SVR*
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spliced messenger RNA

>Ggra10539.t1 ID=Ggra10539.t1|Name=Ggra10539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00000904_pilon:55445..56720- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAACCGGCACAATCACTGAAAGTCGACATACTCCCGACAGAACAAC
ATATATCTCATCTTCTTGTGACCGTCCCGTTCCCAGCATACAACCATCCG
TGTCATTTGGTCCAAGCGGTATCCCGAAGACGTCGTCAATTACACGTTCT
CCTTTGGCTTTTCATTCGGAAGATGGTGACTTCGGTTTGCTTGACATATT
CGTCGACAGCAAGGACTTTGAATTGCACGAAACGGTGAGAAGTCTTAGGT
TCACCGCTGCTGCCACAAGTATTAGCAATCTATTTCCGCCAACGCCAAGG
TCCACCATCACATTACCACCAAGCTCCATTAGCGAGTTTAATCAATTGGA
ATGTGGCAGTGGCGTGAAAGTCGTAGAGGAACTGGACGACCATCTTGGCC
GCAATCTCAAACAGGCAGGGAAGTCGACTGCCACGCCAATGGAGGTGCAG
CAAGCAAGCGAAGAAGATGCAGCTCCAGCTGCAGACATTGCAAAGCCTCT
CAGTCCAGAGGCAATAGCGAAAGCTCGATGCCAGCTTGACGCCTTTATGA
GTGAGCCCGTCACCCCACCTTCTGCAGAACCAAGGGATATCTCTGAGACC
GAAAGTCGTAGACCATTTTCATTCTCGCCACGTTCCCGAAAGATATTTGA
GAAACTATCTATTCGGCGAGAGAGAAAGCTTCCGTCGAGACAAGCGGAGG
GGGATACCCTGGAAACCGATGATGATGAGGCTGCATCTTCTGGACCTCAG
CCCTTGTCCAAAATGATCTCTGGGCTTGAACGTTTGTTCTCGAGGATTTC
CAGTACATCCAAACCTGCAGAGCAGAATGGTCATATCCCCTCGGCGCCCA
AGCCTTCATCGGCATCGCCAGCGGCCTCGAACCCCACTGCACAGAGGAGA
ATGAAGTCGATATTGACCTCCTACTGTACGCTGCAATCACATACATTCCA
GTCCCCAAACACGGCTTCCCAAATAGCTCTGATATTCCCAGAGCTTTCGC
TCAAAGTACATCAGCTTTTCTTGATAACTTTGTCTAACACGGCAACTCCT
TCAGTAAGATAG
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protein sequence of Ggra10539.t1

>Ggra10539.t1 ID=Ggra10539.t1|Name=Ggra10539.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=354bp
MVTGTITESRHTPDRTTYISSSCDRPVPSIQPSVSFGPSGIPKTSSITRS
PLAFHSEDGDFGLLDIFVDSKDFELHETVRSLRFTAAATSISNLFPPTPR
STITLPPSSISEFNQLECGSGVKVVEELDDHLGRNLKQAGKSTATPMEVQ
QASEEDAAPAADIAKPLSPEAIAKARCQLDAFMSEPVTPPSAEPRDISET
ESRRPFSFSPRSRKIFEKLSIRRERKLPSRQAEGDTLETDDDEAASSGPQ
PLSKMISGLERLFSRISSTSKPAEQNGHIPSAPKPSSASPAASNPTAQRR
MKSILTSYCTLQSHTFQSPNTASQIALIFPELSLKVHQLFLITLSNTATP
SVR*
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mRNA from alignment at tig00000904_pilon:55445..56720-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10539.t1 ID=Ggra10539.t1|Name=Ggra10539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1276bp|location=Sequence derived from alignment at tig00000904_pilon:55445..56720- (Gracilaria gracilis GNS1m male)
ATGGTAACCGGCACAATCACTGAAAGTCGACATACTCCCGACAGAACAAC
ATATATCTCATCTTCTTGTGACCGTCCCGTTCCCAGCATACAACCATCCG
TGTCATTTGGTCCAAGCGGTATCCCGAAGACGTCGTCAATTACACGTTCT
CCTTTGGCTTTTCATTCGGAAGATGGTGACTTCGGTTTGCTTGACATATT
CGTCGACAGCAAGGACTTTGAATTGCACGAAACGGTGAGAAGTCTTAGGT
TCACCGCTGCTGCCACAAGTATTAGCAATCTATTTCCGCCAACGCCAAGG
TCCACCATCACATTACCACCAAGCTCCATTAGCGAGTTTAATCAATTGGA
ATGTGGCAGTGGCGTGAAAGTCGTAGAGGAACTGGACGACCATCTTGGCC
GCAATCTCAAACAGGCAGGGAAGTCGACTGCCACGCCAATGGAGGTGCAG
CAAGCAAGCGAAGAAGATGCAGCTCCAGCTGCAGACATTGCAAAGCCTCT
CAGTCCAGAGGCAATAGCGAAAGCTCGATGCCAGCTTGACGCCTTTATGA
GTGAGCCCGTCACCCCACCTTCTGCAGAACCAAGGGATATCTCTGAGACC
GAAAGTCGTAGACCATTTTCATTCTCGCCACGTTCCCGAAAGATATTTGA
GAAACTATCTATTCGGCGAGAGAGAAAGCTTCCGTCGAGACAAGCGGAGG
GGGATACCCTGGAAACCGATGATGATGAGGCTGCATCTTCTGGACCTCAG
CCCTTGTCCAAAATGATCTCTGGGCTTGAACGTTTGTTCTCGAGGATTTC
CAGTACATCCAAACCTGCAGAGCAGAATGGTCATATCCCCTCGGCGCCCA
AGCCTTCATCGGCATCGCCAGCGGCCTCGAACCCCACTGCACAGAGGAGA
ATGAAGTCGATGTTCGCAAAGTGGAGAGGTGAAGTTAGGAAGTTTTTGGA
CAGATTCGTAGATTGACCTCCTACTGTACGGTAAGTGCCGATGGCCAAGT
TTGGGTTTGGCTTACTATGATGATCATCATGATGATCATCATCGCGCGTG
TCGTTTATGACTGCTCATGCAGAAAGAAGATGCCAATGTATTCCTCAGGT
CTAACCCATTCCCAAGTTCGGCGCTCTTCCTAAACAAAACTTAGCTGCAA
TCACATACATTCCAGTCCCCAAACACGGCTTCCCAAATAGCTCTGATATT
CCCAGAGCTTTCGCTCAAAGTACATCAGCTTTTCTTGATAACTTTGTCTA
ACACGGCAACTCCTTCAGTAAGATAG
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Coding sequence (CDS) from alignment at tig00000904_pilon:55445..56720-

>Ggra10539.t1 ID=Ggra10539.t1|Name=Ggra10539.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1062bp|location=Sequence derived from alignment at tig00000904_pilon:55445..56720- (Gracilaria gracilis GNS1m male)
ATGGTAACCGGCACAATCACTGAAAGTCGACATACTCCCGACAGAACAAC
ATATATCTCATCTTCTTGTGACCGTCCCGTTCCCAGCATACAACCATCCG
TGTCATTTGGTCCAAGCGGTATCCCGAAGACGTCGTCAATTACACGTTCT
CCTTTGGCTTTTCATTCGGAAGATGGTGACTTCGGTTTGCTTGACATATT
CGTCGACAGCAAGGACTTTGAATTGCACGAAACGGTGAGAAGTCTTAGGT
TCACCGCTGCTGCCACAAGTATTAGCAATCTATTTCCGCCAACGCCAAGG
TCCACCATCACATTACCACCAAGCTCCATTAGCGAGTTTAATCAATTGGA
ATGTGGCAGTGGCGTGAAAGTCGTAGAGGAACTGGACGACCATCTTGGCC
GCAATCTCAAACAGGCAGGGAAGTCGACTGCCACGCCAATGGAGGTGCAG
CAAGCAAGCGAAGAAGATGCAGCTCCAGCTGCAGACATTGCAAAGCCTCT
CAGTCCAGAGGCAATAGCGAAAGCTCGATGCCAGCTTGACGCCTTTATGA
GTGAGCCCGTCACCCCACCTTCTGCAGAACCAAGGGATATCTCTGAGACC
GAAAGTCGTAGACCATTTTCATTCTCGCCACGTTCCCGAAAGATATTTGA
GAAACTATCTATTCGGCGAGAGAGAAAGCTTCCGTCGAGACAAGCGGAGG
GGGATACCCTGGAAACCGATGATGATGAGGCTGCATCTTCTGGACCTCAG
CCCTTGTCCAAAATGATCTCTGGGCTTGAACGTTTGTTCTCGAGGATTTC
CAGTACATCCAAACCTGCAGAGCAGAATGGTCATATCCCCTCGGCGCCCA
AGCCTTCATCGGCATCGCCAGCGGCCTCGAACCCCACTGCACAGAGGAGA
ATGAAGTCGATATTGACCTCCTACTGTACGCTGCAATCACATACATTCCA
GTCCCCAAACACGGCTTCCCAAATAGCTCTGATATTCCCAGAGCTTTCGC
TCAAAGTACATCAGCTTTTCTTGATAACTTTGTCTAACACGGCAACTCCT
TCAGTAAGATAG
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