Ggra10254.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:221968..223926 -

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10254	Ggra10254	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 221968..223926 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10254.t1	Ggra10254.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 221968..223926 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10254.t1.stop1	Ggra10254.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 221968..221970 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10254.t1.CDS1	Ggra10254.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 221968..222138 -
Ggra10254.t1.CDS2	Ggra10254.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 222209..222373 -
Ggra10254.t1.CDS3	Ggra10254.t1.CDS3	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 222445..223926 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10254.t1.exon1	Ggra10254.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 221968..222138 -
Ggra10254.t1.exon2	Ggra10254.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 222209..222373 -
Ggra10254.t1.exon3	Ggra10254.t1.exon3	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 222445..223926 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10254.t1.intron1	Ggra10254.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000016_pilon 222139..222208 -
Ggra10254.t1.intron2	Ggra10254.t1.intron2	Gracilaria gracilis GNS1m male	intron	tig00000016_pilon 222374..222444 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10254.t1.start1	Ggra10254.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 223924..223926 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:221968..223926-
coding sequence from alignment at tig00000016_pilon:221968..223926-

mRNA sequence

>Ggra10254.t1 ID=Ggra10254.t1|Name=Ggra10254.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=606bp
MLSCNHIPTKLRAALDSRDQRRLKTAISQLPTSLPQVEDSLEIARCLEEV
RVAADVFIEACDFDTAFESAVRTRAALITAKILPWAVSVLKNFAFEERVV
GRVALTLEHLGGGMEPRGDIGAAGAVDQLGILWKSHPSCVAIVDALISLC
TGHIDNISRFMRRRGITTAITVLNSPDTARNSKLEERIMILVGLCAICTP
DNNREGTSLVPAILGALKRKQGRTQIELTRHTFIAIANMAECWTKEEAGY
DLGDVHGLVELVAETWISVPRSREMAFASSWALAALYRYNMDVLRHLKRR
SQDMIAVHNRWRSNIRTVEFLASLTEAVKPETKRTKTLREALRAKSRRSE
VVPDPESLESNTHKSESDAEDMCVSGDEGDLTDREKSPVSVGEASIENQT
IIVDYDSDDEQTRPFETVHEPKSKTSPNKTSPNAVHSTLKEIPIIILDSD
SDDQSAVPAEPKNPAKSKGQQKNITRTRRRKRSAILEDDITHTEKAEPEV
SVKSASTRNTITEADEDWRVTTNGIVPVHSSTRSGLPSSRVSTTAVESKQ
TMRLGAHLYLSSFQRLSASRYIDLNTWMRNTSPPCGLDSQVTSESGRLSA
NSWGS*

spliced messenger RNA

>Ggra10254.t1 ID=Ggra10254.t1|Name=Ggra10254.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1818bp|location=Sequence derived from alignment at tig00000016_pilon:221968..223926- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCCTGCAACCATATTCCGACCAAGTTGCGCGCTGCTTTGGATTC
TCGTGATCAGAGACGTCTCAAAACCGCCATATCTCAACTGCCAACATCCC
TTCCACAAGTCGAGGACTCCCTTGAGATAGCAAGATGTCTCGAAGAAGTG
CGAGTGGCCGCAGACGTGTTCATTGAAGCTTGCGATTTCGATACCGCGTT
CGAGTCTGCTGTGAGAACCCGGGCCGCACTTATTACGGCGAAAATTCTGC
CTTGGGCTGTTTCTGTGTTGAAGAACTTTGCGTTCGAGGAGCGAGTGGTG
GGGCGCGTGGCCCTTACCCTTGAACACCTGGGTGGTGGCATGGAACCTAG
AGGCGATATAGGAGCTGCTGGAGCCGTCGACCAGCTTGGTATCTTGTGGA
AGAGTCACCCTTCCTGTGTGGCCATAGTGGACGCCCTTATCTCTCTCTGC
ACCGGCCATATTGACAACATATCTCGGTTCATGAGACGTCGTGGGATTAC
TACAGCTATCACGGTACTTAACAGTCCAGACACTGCGCGAAATTCAAAGC
TTGAGGAACGTATCATGATTCTTGTGGGTCTTTGCGCCATTTGTACCCCC
GACAACAACCGTGAAGGCACTTCACTTGTTCCTGCGATTTTGGGTGCCTT
GAAACGGAAACAAGGGCGCACGCAAATCGAATTGACAAGGCATACGTTCA
TTGCCATCGCCAACATGGCAGAATGCTGGACGAAGGAAGAGGCTGGCTAT
GACCTTGGTGATGTTCATGGGTTGGTGGAGCTCGTCGCGGAAACATGGAT
ATCTGTTCCGAGATCAAGGGAGATGGCATTTGCGTCCTCATGGGCCCTAG
CCGCGCTCTACCGATATAACATGGACGTCCTTCGCCATCTCAAACGGAGG
TCGCAAGATATGATAGCCGTACATAATAGATGGCGATCCAATATAAGGAC
TGTGGAATTCCTGGCGAGTCTTACAGAAGCGGTGAAGCCAGAGACAAAGA
GAACAAAAACCCTCCGTGAGGCCCTCCGAGCCAAGTCGAGGAGAAGCGAA
GTTGTTCCAGACCCAGAGTCTCTGGAGTCTAACACGCATAAATCAGAGAG
CGACGCAGAGGACATGTGTGTGTCAGGGGATGAAGGCGATCTCACAGATA
GGGAGAAGTCTCCTGTTTCCGTGGGCGAAGCATCGATCGAGAACCAAACC
ATCATTGTCGACTATGATTCGGATGATGAACAAACTCGTCCTTTTGAAAC
AGTGCACGAACCCAAGTCAAAGACAAGTCCCAATAAGACAAGTCCCAATG
CAGTGCACTCTACACTCAAGGAGATTCCGATAATAATCCTGGATTCCGAT
TCTGATGACCAAAGTGCCGTCCCAGCTGAACCCAAGAACCCCGCAAAATC
GAAAGGACAACAGAAGAACATCACAAGAACAAGGAGAAGGAAGCGTTCGG
CAATTCTTGAAGACGACATCACGCACACTGAGAAGGCCGAACCCGAAGTA
TCAGTCAAGTCCGCGTCGACAAGGAACACGATTACTGAGGCGGACGAAGA
TTGGAGGGTTACTACCAATGGTATCGTCCCAGTCCATAGTTCCACCAGGT
CAGGGTTGCCAAGTTCTAGAGTGTCGACGACGGCGGTAGAATCCAAGCAA
ACGATGCGTCTGGGCGCTCATCTATATTTATCTAGCTTCCAGCGACTTTC
GGCTTCACGGTACATAGACCTAAATACATGGATGAGGAATACTTCGCCCC
CTTGTGGACTAGACAGTCAAGTTACTTCTGAGAGTGGACGTCTATCGGCG
AACAGTTGGGGATCATAA

protein sequence of Ggra10254.t1

>Ggra10254.t1 ID=Ggra10254.t1|Name=Ggra10254.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=606bp
MLSCNHIPTKLRAALDSRDQRRLKTAISQLPTSLPQVEDSLEIARCLEEV
RVAADVFIEACDFDTAFESAVRTRAALITAKILPWAVSVLKNFAFEERVV
GRVALTLEHLGGGMEPRGDIGAAGAVDQLGILWKSHPSCVAIVDALISLC
TGHIDNISRFMRRRGITTAITVLNSPDTARNSKLEERIMILVGLCAICTP
DNNREGTSLVPAILGALKRKQGRTQIELTRHTFIAIANMAECWTKEEAGY
DLGDVHGLVELVAETWISVPRSREMAFASSWALAALYRYNMDVLRHLKRR
SQDMIAVHNRWRSNIRTVEFLASLTEAVKPETKRTKTLREALRAKSRRSE
VVPDPESLESNTHKSESDAEDMCVSGDEGDLTDREKSPVSVGEASIENQT
IIVDYDSDDEQTRPFETVHEPKSKTSPNKTSPNAVHSTLKEIPIIILDSD
SDDQSAVPAEPKNPAKSKGQQKNITRTRRRKRSAILEDDITHTEKAEPEV
SVKSASTRNTITEADEDWRVTTNGIVPVHSSTRSGLPSSRVSTTAVESKQ
TMRLGAHLYLSSFQRLSASRYIDLNTWMRNTSPPCGLDSQVTSESGRLSA
NSWGS*

mRNA from alignment at tig00000016_pilon:221968..223926-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10254.t1 ID=Ggra10254.t1|Name=Ggra10254.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1959bp|location=Sequence derived from alignment at tig00000016_pilon:221968..223926- (Gracilaria gracilis GNS1m male)
ATGCTCTCCTGCAACCATATTCCGACCAAGTTGCGCGCTGCTTTGGATTC
TCGTGATCAGAGACGTCTCAAAACCGCCATATCTCAACTGCCAACATCCC
TTCCACAAGTCGAGGACTCCCTTGAGATAGCAAGATGTCTCGAAGAAGTG
CGAGTGGCCGCAGACGTGTTCATTGAAGCTTGCGATTTCGATACCGCGTT
CGAGTCTGCTGTGAGAACCCGGGCCGCACTTATTACGGCGAAAATTCTGC
CTTGGGCTGTTTCTGTGTTGAAGAACTTTGCGTTCGAGGAGCGAGTGGTG
GGGCGCGTGGCCCTTACCCTTGAACACCTGGGTGGTGGCATGGAACCTAG
AGGCGATATAGGAGCTGCTGGAGCCGTCGACCAGCTTGGTATCTTGTGGA
AGAGTCACCCTTCCTGTGTGGCCATAGTGGACGCCCTTATCTCTCTCTGC
ACCGGCCATATTGACAACATATCTCGGTTCATGAGACGTCGTGGGATTAC
TACAGCTATCACGGTACTTAACAGTCCAGACACTGCGCGAAATTCAAAGC
TTGAGGAACGTATCATGATTCTTGTGGGTCTTTGCGCCATTTGTACCCCC
GACAACAACCGTGAAGGCACTTCACTTGTTCCTGCGATTTTGGGTGCCTT
GAAACGGAAACAAGGGCGCACGCAAATCGAATTGACAAGGCATACGTTCA
TTGCCATCGCCAACATGGCAGAATGCTGGACGAAGGAAGAGGCTGGCTAT
GACCTTGGTGATGTTCATGGGTTGGTGGAGCTCGTCGCGGAAACATGGAT
ATCTGTTCCGAGATCAAGGGAGATGGCATTTGCGTCCTCATGGGCCCTAG
CCGCGCTCTACCGATATAACATGGACGTCCTTCGCCATCTCAAACGGAGG
TCGCAAGATATGATAGCCGTACATAATAGATGGCGATCCAATATAAGGAC
TGTGGAATTCCTGGCGAGTCTTACAGAAGCGGTGAAGCCAGAGACAAAGA
GAACAAAAACCCTCCGTGAGGCCCTCCGAGCCAAGTCGAGGAGAAGCGAA
GTTGTTCCAGACCCAGAGTCTCTGGAGTCTAACACGCATAAATCAGAGAG
CGACGCAGAGGACATGTGTGTGTCAGGGGATGAAGGCGATCTCACAGATA
GGGAGAAGTCTCCTGTTTCCGTGGGCGAAGCATCGATCGAGAACCAAACC
ATCATTGTCGACTATGATTCGGATGATGAACAAACTCGTCCTTTTGAAAC
AGTGCACGAACCCAAGTCAAAGACAAGTCCCAATAAGACAAGTCCCAATG
CAGTGCACTCTACACTCAAGGAGATTCCGATAATAATCCTGGATTCCGAT
TCTGATGACCAAAGTGCCGTCCCAGCTGAACCCAAGAACCCCGCAAAATC
GAAAGGACAACAGAAGAACATCACAAGAACAAGGAGAAGGAAGCGTTCGG
CAATTCTTGAAGACGACATCACGCACACTGAGGTATCTACCAAGAAGCCT
AGGGAAGAGATGCAGAATGAAAATCTGAATATGCGAAGATCAAAGAGACA
AAGAAGGCCGAACCCGAAGTATCAGTCAAGTCCGCGTCGACAAGGAACAC
GATTACTGAGGCGGACGAAGATTGGAGGGTTACTACCAATGGTATCGTCC
CAGTCCATAGTTCCACCAGGTCAGGGTTGCCAAGTTCTAGAGTGTCGACG
ACGGCGGTAGAATCCAAGGTACGATCCGTTCTTAGCTTCTCGCAAGCGCT
TGAGACATAACACTAAACCTTCACGCTTATCGCGACAGCAAACGATGCGT
CTGGGCGCTCATCTATATTTATCTAGCTTCCAGCGACTTTCGGCTTCACG
GTACATAGACCTAAATACATGGATGAGGAATACTTCGCCCCCTTGTGGAC
TAGACAGTCAAGTTACTTCTGAGAGTGGACGTCTATCGGCGAACAGTTGG
GGATCATAA

Coding sequence (CDS) from alignment at tig00000016_pilon:221968..223926-

>Ggra10254.t1 ID=Ggra10254.t1|Name=Ggra10254.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1818bp|location=Sequence derived from alignment at tig00000016_pilon:221968..223926- (Gracilaria gracilis GNS1m male)
ATGCTCTCCTGCAACCATATTCCGACCAAGTTGCGCGCTGCTTTGGATTC
TCGTGATCAGAGACGTCTCAAAACCGCCATATCTCAACTGCCAACATCCC
TTCCACAAGTCGAGGACTCCCTTGAGATAGCAAGATGTCTCGAAGAAGTG
CGAGTGGCCGCAGACGTGTTCATTGAAGCTTGCGATTTCGATACCGCGTT
CGAGTCTGCTGTGAGAACCCGGGCCGCACTTATTACGGCGAAAATTCTGC
CTTGGGCTGTTTCTGTGTTGAAGAACTTTGCGTTCGAGGAGCGAGTGGTG
GGGCGCGTGGCCCTTACCCTTGAACACCTGGGTGGTGGCATGGAACCTAG
AGGCGATATAGGAGCTGCTGGAGCCGTCGACCAGCTTGGTATCTTGTGGA
AGAGTCACCCTTCCTGTGTGGCCATAGTGGACGCCCTTATCTCTCTCTGC
ACCGGCCATATTGACAACATATCTCGGTTCATGAGACGTCGTGGGATTAC
TACAGCTATCACGGTACTTAACAGTCCAGACACTGCGCGAAATTCAAAGC
TTGAGGAACGTATCATGATTCTTGTGGGTCTTTGCGCCATTTGTACCCCC
GACAACAACCGTGAAGGCACTTCACTTGTTCCTGCGATTTTGGGTGCCTT
GAAACGGAAACAAGGGCGCACGCAAATCGAATTGACAAGGCATACGTTCA
TTGCCATCGCCAACATGGCAGAATGCTGGACGAAGGAAGAGGCTGGCTAT
GACCTTGGTGATGTTCATGGGTTGGTGGAGCTCGTCGCGGAAACATGGAT
ATCTGTTCCGAGATCAAGGGAGATGGCATTTGCGTCCTCATGGGCCCTAG
CCGCGCTCTACCGATATAACATGGACGTCCTTCGCCATCTCAAACGGAGG
TCGCAAGATATGATAGCCGTACATAATAGATGGCGATCCAATATAAGGAC
TGTGGAATTCCTGGCGAGTCTTACAGAAGCGGTGAAGCCAGAGACAAAGA
GAACAAAAACCCTCCGTGAGGCCCTCCGAGCCAAGTCGAGGAGAAGCGAA
GTTGTTCCAGACCCAGAGTCTCTGGAGTCTAACACGCATAAATCAGAGAG
CGACGCAGAGGACATGTGTGTGTCAGGGGATGAAGGCGATCTCACAGATA
GGGAGAAGTCTCCTGTTTCCGTGGGCGAAGCATCGATCGAGAACCAAACC
ATCATTGTCGACTATGATTCGGATGATGAACAAACTCGTCCTTTTGAAAC
AGTGCACGAACCCAAGTCAAAGACAAGTCCCAATAAGACAAGTCCCAATG
CAGTGCACTCTACACTCAAGGAGATTCCGATAATAATCCTGGATTCCGAT
TCTGATGACCAAAGTGCCGTCCCAGCTGAACCCAAGAACCCCGCAAAATC
GAAAGGACAACAGAAGAACATCACAAGAACAAGGAGAAGGAAGCGTTCGG
CAATTCTTGAAGACGACATCACGCACACTGAGAAGGCCGAACCCGAAGTA
TCAGTCAAGTCCGCGTCGACAAGGAACACGATTACTGAGGCGGACGAAGA
TTGGAGGGTTACTACCAATGGTATCGTCCCAGTCCATAGTTCCACCAGGT
CAGGGTTGCCAAGTTCTAGAGTGTCGACGACGGCGGTAGAATCCAAGCAA
ACGATGCGTCTGGGCGCTCATCTATATTTATCTAGCTTCCAGCGACTTTC
GGCTTCACGGTACATAGACCTAAATACATGGATGAGGAATACTTCGCCCC
CTTGTGGACTAGACAGTCAAGTTACTTCTGAGAGTGGACGTCTATCGGCG
AACAGTTGGGGATCATAA