Ggra10254.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10254.t1
Unique NameGgra10254.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length606
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:221968..223926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10254Ggra10254Gracilaria gracilis GNS1m malegenetig00000016_pilon 221968..223926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10254.t1Ggra10254.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 221968..223926 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10254.t1.stop1Ggra10254.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 221968..221970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10254.t1.CDS1Ggra10254.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 221968..222138 -
Ggra10254.t1.CDS2Ggra10254.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 222209..222373 -
Ggra10254.t1.CDS3Ggra10254.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000016_pilon 222445..223926 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10254.t1.exon1Ggra10254.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 221968..222138 -
Ggra10254.t1.exon2Ggra10254.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 222209..222373 -
Ggra10254.t1.exon3Ggra10254.t1.exon3Gracilaria gracilis GNS1m maleexontig00000016_pilon 222445..223926 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10254.t1.intron1Ggra10254.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 222139..222208 -
Ggra10254.t1.intron2Ggra10254.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000016_pilon 222374..222444 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10254.t1.start1Ggra10254.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 223924..223926 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10254.t1 ID=Ggra10254.t1|Name=Ggra10254.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=606bp
MLSCNHIPTKLRAALDSRDQRRLKTAISQLPTSLPQVEDSLEIARCLEEV
RVAADVFIEACDFDTAFESAVRTRAALITAKILPWAVSVLKNFAFEERVV
GRVALTLEHLGGGMEPRGDIGAAGAVDQLGILWKSHPSCVAIVDALISLC
TGHIDNISRFMRRRGITTAITVLNSPDTARNSKLEERIMILVGLCAICTP
DNNREGTSLVPAILGALKRKQGRTQIELTRHTFIAIANMAECWTKEEAGY
DLGDVHGLVELVAETWISVPRSREMAFASSWALAALYRYNMDVLRHLKRR
SQDMIAVHNRWRSNIRTVEFLASLTEAVKPETKRTKTLREALRAKSRRSE
VVPDPESLESNTHKSESDAEDMCVSGDEGDLTDREKSPVSVGEASIENQT
IIVDYDSDDEQTRPFETVHEPKSKTSPNKTSPNAVHSTLKEIPIIILDSD
SDDQSAVPAEPKNPAKSKGQQKNITRTRRRKRSAILEDDITHTEKAEPEV
SVKSASTRNTITEADEDWRVTTNGIVPVHSSTRSGLPSSRVSTTAVESKQ
TMRLGAHLYLSSFQRLSASRYIDLNTWMRNTSPPCGLDSQVTSESGRLSA
NSWGS*
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spliced messenger RNA

>Ggra10254.t1 ID=Ggra10254.t1|Name=Ggra10254.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1818bp|location=Sequence derived from alignment at tig00000016_pilon:221968..223926- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCCTGCAACCATATTCCGACCAAGTTGCGCGCTGCTTTGGATTC
TCGTGATCAGAGACGTCTCAAAACCGCCATATCTCAACTGCCAACATCCC
TTCCACAAGTCGAGGACTCCCTTGAGATAGCAAGATGTCTCGAAGAAGTG
CGAGTGGCCGCAGACGTGTTCATTGAAGCTTGCGATTTCGATACCGCGTT
CGAGTCTGCTGTGAGAACCCGGGCCGCACTTATTACGGCGAAAATTCTGC
CTTGGGCTGTTTCTGTGTTGAAGAACTTTGCGTTCGAGGAGCGAGTGGTG
GGGCGCGTGGCCCTTACCCTTGAACACCTGGGTGGTGGCATGGAACCTAG
AGGCGATATAGGAGCTGCTGGAGCCGTCGACCAGCTTGGTATCTTGTGGA
AGAGTCACCCTTCCTGTGTGGCCATAGTGGACGCCCTTATCTCTCTCTGC
ACCGGCCATATTGACAACATATCTCGGTTCATGAGACGTCGTGGGATTAC
TACAGCTATCACGGTACTTAACAGTCCAGACACTGCGCGAAATTCAAAGC
TTGAGGAACGTATCATGATTCTTGTGGGTCTTTGCGCCATTTGTACCCCC
GACAACAACCGTGAAGGCACTTCACTTGTTCCTGCGATTTTGGGTGCCTT
GAAACGGAAACAAGGGCGCACGCAAATCGAATTGACAAGGCATACGTTCA
TTGCCATCGCCAACATGGCAGAATGCTGGACGAAGGAAGAGGCTGGCTAT
GACCTTGGTGATGTTCATGGGTTGGTGGAGCTCGTCGCGGAAACATGGAT
ATCTGTTCCGAGATCAAGGGAGATGGCATTTGCGTCCTCATGGGCCCTAG
CCGCGCTCTACCGATATAACATGGACGTCCTTCGCCATCTCAAACGGAGG
TCGCAAGATATGATAGCCGTACATAATAGATGGCGATCCAATATAAGGAC
TGTGGAATTCCTGGCGAGTCTTACAGAAGCGGTGAAGCCAGAGACAAAGA
GAACAAAAACCCTCCGTGAGGCCCTCCGAGCCAAGTCGAGGAGAAGCGAA
GTTGTTCCAGACCCAGAGTCTCTGGAGTCTAACACGCATAAATCAGAGAG
CGACGCAGAGGACATGTGTGTGTCAGGGGATGAAGGCGATCTCACAGATA
GGGAGAAGTCTCCTGTTTCCGTGGGCGAAGCATCGATCGAGAACCAAACC
ATCATTGTCGACTATGATTCGGATGATGAACAAACTCGTCCTTTTGAAAC
AGTGCACGAACCCAAGTCAAAGACAAGTCCCAATAAGACAAGTCCCAATG
CAGTGCACTCTACACTCAAGGAGATTCCGATAATAATCCTGGATTCCGAT
TCTGATGACCAAAGTGCCGTCCCAGCTGAACCCAAGAACCCCGCAAAATC
GAAAGGACAACAGAAGAACATCACAAGAACAAGGAGAAGGAAGCGTTCGG
CAATTCTTGAAGACGACATCACGCACACTGAGAAGGCCGAACCCGAAGTA
TCAGTCAAGTCCGCGTCGACAAGGAACACGATTACTGAGGCGGACGAAGA
TTGGAGGGTTACTACCAATGGTATCGTCCCAGTCCATAGTTCCACCAGGT
CAGGGTTGCCAAGTTCTAGAGTGTCGACGACGGCGGTAGAATCCAAGCAA
ACGATGCGTCTGGGCGCTCATCTATATTTATCTAGCTTCCAGCGACTTTC
GGCTTCACGGTACATAGACCTAAATACATGGATGAGGAATACTTCGCCCC
CTTGTGGACTAGACAGTCAAGTTACTTCTGAGAGTGGACGTCTATCGGCG
AACAGTTGGGGATCATAA
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protein sequence of Ggra10254.t1

>Ggra10254.t1 ID=Ggra10254.t1|Name=Ggra10254.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=606bp
MLSCNHIPTKLRAALDSRDQRRLKTAISQLPTSLPQVEDSLEIARCLEEV
RVAADVFIEACDFDTAFESAVRTRAALITAKILPWAVSVLKNFAFEERVV
GRVALTLEHLGGGMEPRGDIGAAGAVDQLGILWKSHPSCVAIVDALISLC
TGHIDNISRFMRRRGITTAITVLNSPDTARNSKLEERIMILVGLCAICTP
DNNREGTSLVPAILGALKRKQGRTQIELTRHTFIAIANMAECWTKEEAGY
DLGDVHGLVELVAETWISVPRSREMAFASSWALAALYRYNMDVLRHLKRR
SQDMIAVHNRWRSNIRTVEFLASLTEAVKPETKRTKTLREALRAKSRRSE
VVPDPESLESNTHKSESDAEDMCVSGDEGDLTDREKSPVSVGEASIENQT
IIVDYDSDDEQTRPFETVHEPKSKTSPNKTSPNAVHSTLKEIPIIILDSD
SDDQSAVPAEPKNPAKSKGQQKNITRTRRRKRSAILEDDITHTEKAEPEV
SVKSASTRNTITEADEDWRVTTNGIVPVHSSTRSGLPSSRVSTTAVESKQ
TMRLGAHLYLSSFQRLSASRYIDLNTWMRNTSPPCGLDSQVTSESGRLSA
NSWGS*
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mRNA from alignment at tig00000016_pilon:221968..223926-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10254.t1 ID=Ggra10254.t1|Name=Ggra10254.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1959bp|location=Sequence derived from alignment at tig00000016_pilon:221968..223926- (Gracilaria gracilis GNS1m male)
ATGCTCTCCTGCAACCATATTCCGACCAAGTTGCGCGCTGCTTTGGATTC
TCGTGATCAGAGACGTCTCAAAACCGCCATATCTCAACTGCCAACATCCC
TTCCACAAGTCGAGGACTCCCTTGAGATAGCAAGATGTCTCGAAGAAGTG
CGAGTGGCCGCAGACGTGTTCATTGAAGCTTGCGATTTCGATACCGCGTT
CGAGTCTGCTGTGAGAACCCGGGCCGCACTTATTACGGCGAAAATTCTGC
CTTGGGCTGTTTCTGTGTTGAAGAACTTTGCGTTCGAGGAGCGAGTGGTG
GGGCGCGTGGCCCTTACCCTTGAACACCTGGGTGGTGGCATGGAACCTAG
AGGCGATATAGGAGCTGCTGGAGCCGTCGACCAGCTTGGTATCTTGTGGA
AGAGTCACCCTTCCTGTGTGGCCATAGTGGACGCCCTTATCTCTCTCTGC
ACCGGCCATATTGACAACATATCTCGGTTCATGAGACGTCGTGGGATTAC
TACAGCTATCACGGTACTTAACAGTCCAGACACTGCGCGAAATTCAAAGC
TTGAGGAACGTATCATGATTCTTGTGGGTCTTTGCGCCATTTGTACCCCC
GACAACAACCGTGAAGGCACTTCACTTGTTCCTGCGATTTTGGGTGCCTT
GAAACGGAAACAAGGGCGCACGCAAATCGAATTGACAAGGCATACGTTCA
TTGCCATCGCCAACATGGCAGAATGCTGGACGAAGGAAGAGGCTGGCTAT
GACCTTGGTGATGTTCATGGGTTGGTGGAGCTCGTCGCGGAAACATGGAT
ATCTGTTCCGAGATCAAGGGAGATGGCATTTGCGTCCTCATGGGCCCTAG
CCGCGCTCTACCGATATAACATGGACGTCCTTCGCCATCTCAAACGGAGG
TCGCAAGATATGATAGCCGTACATAATAGATGGCGATCCAATATAAGGAC
TGTGGAATTCCTGGCGAGTCTTACAGAAGCGGTGAAGCCAGAGACAAAGA
GAACAAAAACCCTCCGTGAGGCCCTCCGAGCCAAGTCGAGGAGAAGCGAA
GTTGTTCCAGACCCAGAGTCTCTGGAGTCTAACACGCATAAATCAGAGAG
CGACGCAGAGGACATGTGTGTGTCAGGGGATGAAGGCGATCTCACAGATA
GGGAGAAGTCTCCTGTTTCCGTGGGCGAAGCATCGATCGAGAACCAAACC
ATCATTGTCGACTATGATTCGGATGATGAACAAACTCGTCCTTTTGAAAC
AGTGCACGAACCCAAGTCAAAGACAAGTCCCAATAAGACAAGTCCCAATG
CAGTGCACTCTACACTCAAGGAGATTCCGATAATAATCCTGGATTCCGAT
TCTGATGACCAAAGTGCCGTCCCAGCTGAACCCAAGAACCCCGCAAAATC
GAAAGGACAACAGAAGAACATCACAAGAACAAGGAGAAGGAAGCGTTCGG
CAATTCTTGAAGACGACATCACGCACACTGAGGTATCTACCAAGAAGCCT
AGGGAAGAGATGCAGAATGAAAATCTGAATATGCGAAGATCAAAGAGACA
AAGAAGGCCGAACCCGAAGTATCAGTCAAGTCCGCGTCGACAAGGAACAC
GATTACTGAGGCGGACGAAGATTGGAGGGTTACTACCAATGGTATCGTCC
CAGTCCATAGTTCCACCAGGTCAGGGTTGCCAAGTTCTAGAGTGTCGACG
ACGGCGGTAGAATCCAAGGTACGATCCGTTCTTAGCTTCTCGCAAGCGCT
TGAGACATAACACTAAACCTTCACGCTTATCGCGACAGCAAACGATGCGT
CTGGGCGCTCATCTATATTTATCTAGCTTCCAGCGACTTTCGGCTTCACG
GTACATAGACCTAAATACATGGATGAGGAATACTTCGCCCCCTTGTGGAC
TAGACAGTCAAGTTACTTCTGAGAGTGGACGTCTATCGGCGAACAGTTGG
GGATCATAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:221968..223926-

>Ggra10254.t1 ID=Ggra10254.t1|Name=Ggra10254.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1818bp|location=Sequence derived from alignment at tig00000016_pilon:221968..223926- (Gracilaria gracilis GNS1m male)
ATGCTCTCCTGCAACCATATTCCGACCAAGTTGCGCGCTGCTTTGGATTC
TCGTGATCAGAGACGTCTCAAAACCGCCATATCTCAACTGCCAACATCCC
TTCCACAAGTCGAGGACTCCCTTGAGATAGCAAGATGTCTCGAAGAAGTG
CGAGTGGCCGCAGACGTGTTCATTGAAGCTTGCGATTTCGATACCGCGTT
CGAGTCTGCTGTGAGAACCCGGGCCGCACTTATTACGGCGAAAATTCTGC
CTTGGGCTGTTTCTGTGTTGAAGAACTTTGCGTTCGAGGAGCGAGTGGTG
GGGCGCGTGGCCCTTACCCTTGAACACCTGGGTGGTGGCATGGAACCTAG
AGGCGATATAGGAGCTGCTGGAGCCGTCGACCAGCTTGGTATCTTGTGGA
AGAGTCACCCTTCCTGTGTGGCCATAGTGGACGCCCTTATCTCTCTCTGC
ACCGGCCATATTGACAACATATCTCGGTTCATGAGACGTCGTGGGATTAC
TACAGCTATCACGGTACTTAACAGTCCAGACACTGCGCGAAATTCAAAGC
TTGAGGAACGTATCATGATTCTTGTGGGTCTTTGCGCCATTTGTACCCCC
GACAACAACCGTGAAGGCACTTCACTTGTTCCTGCGATTTTGGGTGCCTT
GAAACGGAAACAAGGGCGCACGCAAATCGAATTGACAAGGCATACGTTCA
TTGCCATCGCCAACATGGCAGAATGCTGGACGAAGGAAGAGGCTGGCTAT
GACCTTGGTGATGTTCATGGGTTGGTGGAGCTCGTCGCGGAAACATGGAT
ATCTGTTCCGAGATCAAGGGAGATGGCATTTGCGTCCTCATGGGCCCTAG
CCGCGCTCTACCGATATAACATGGACGTCCTTCGCCATCTCAAACGGAGG
TCGCAAGATATGATAGCCGTACATAATAGATGGCGATCCAATATAAGGAC
TGTGGAATTCCTGGCGAGTCTTACAGAAGCGGTGAAGCCAGAGACAAAGA
GAACAAAAACCCTCCGTGAGGCCCTCCGAGCCAAGTCGAGGAGAAGCGAA
GTTGTTCCAGACCCAGAGTCTCTGGAGTCTAACACGCATAAATCAGAGAG
CGACGCAGAGGACATGTGTGTGTCAGGGGATGAAGGCGATCTCACAGATA
GGGAGAAGTCTCCTGTTTCCGTGGGCGAAGCATCGATCGAGAACCAAACC
ATCATTGTCGACTATGATTCGGATGATGAACAAACTCGTCCTTTTGAAAC
AGTGCACGAACCCAAGTCAAAGACAAGTCCCAATAAGACAAGTCCCAATG
CAGTGCACTCTACACTCAAGGAGATTCCGATAATAATCCTGGATTCCGAT
TCTGATGACCAAAGTGCCGTCCCAGCTGAACCCAAGAACCCCGCAAAATC
GAAAGGACAACAGAAGAACATCACAAGAACAAGGAGAAGGAAGCGTTCGG
CAATTCTTGAAGACGACATCACGCACACTGAGAAGGCCGAACCCGAAGTA
TCAGTCAAGTCCGCGTCGACAAGGAACACGATTACTGAGGCGGACGAAGA
TTGGAGGGTTACTACCAATGGTATCGTCCCAGTCCATAGTTCCACCAGGT
CAGGGTTGCCAAGTTCTAGAGTGTCGACGACGGCGGTAGAATCCAAGCAA
ACGATGCGTCTGGGCGCTCATCTATATTTATCTAGCTTCCAGCGACTTTC
GGCTTCACGGTACATAGACCTAAATACATGGATGAGGAATACTTCGCCCC
CTTGTGGACTAGACAGTCAAGTTACTTCTGAGAGTGGACGTCTATCGGCG
AACAGTTGGGGATCATAA
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