Ggra10254.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra10254.t1
Unique Name	Ggra10254.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	606

Homology

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BLAST of Ggra10254.t1 vs. uniprot
Match: A0A2V3IJ83 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJ83_9FLOR)

HSP 1 Score: 357 bits (916), Expect = 7.250e-112
Identity = 181/319 (56.74%), Postives = 234/319 (73.35%), Query Frame = 0

Query:   11 LRAALDSRDQRRLKTAISQLPTSLPQVEDSLEIARCLEEVRVAADVFIEACDFDTAFESAVRTRAALITAKILPWAVSVLKNFAFEERVVGRVALTLEHLGGGMEPRGDIGAAGAVDQLGILWKSHPSCVAIVDALISLCTGHIDNISRFMRRRGITTAITVLNSPDTARNSKLEERIMILVGLCAICTPDNNREGTSLVPAILGALKRKQGRTQIELTRHTFIAIANMAECWTKEEAGYDLGDVHGLVELVAETWISVPRSREMAFASSWALAALYRYNMDVLRHLKRRSQDMIAVHNRWRSNIRTVEFLASLTEAVK 329
            LR AL + D R LK+ IS LP++L   +D  +IA+CLE VRV ADV  +ACDF+TAFE+A+  R+ LI AK+LPWAVSVL++FAF+ER+  RVAL L H+G G E RG+IG AGAVDQ+ I+WK+HP+ + IV ALISLCTGHIDNISR MRRRGI+TAI VL S  +A N +L E++MILVGLC IC PDN +EG+SLVPAIL AL     R  + + RH  IAIANMA+CW KE AGY+LGD+  LV+LV  +W S    ++MA A++WAL+ALY ++ DV  H+KRR Q+   V + W+++ RT   L  + +A K
Sbjct:   12 LRRALQNCDSRGLKSIISNLPSALLLSDDPGQIAQCLEHVRVVADVLADACDFNTAFEAAIYARSLLIQAKMLPWAVSVLESFAFDERIASRVALALAHVGIGAEARGEIGKAGAVDQIAIVWKAHPTSIPIVQALISLCTGHIDNISRLMRRRGISTAIKVLRSSQSATNVQLAEQVMILVGLCTICIPDNVKEGSSLVPAILHALNSSGKRKPVAVARHALIAIANMADCWVKERAGYELGDIERLVQLVITSWKSARTCKDMALAATWALSALYSHDTDVQIHVKRRGQEFSDVVSGWKTHSRTAALLTIIFDATK 330

The following BLAST results are available for this feature:

BLAST of Ggra10254.t1 vs. uniprot

BLAST of Ggra10254.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IJ83	7.250e-112	56.74	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 39..354 e-value: 3.9E-8 score: 34.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 340..434
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 406..423
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 446..500
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 480..500
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 340..387
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 80..298

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:221968..223926 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10254.t1	Ggra10254.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000016_pilon 221968..223926 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra10254.t1 ID=Ggra10254.t1|Name=Ggra10254.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=606bp
MLSCNHIPTKLRAALDSRDQRRLKTAISQLPTSLPQVEDSLEIARCLEEV
RVAADVFIEACDFDTAFESAVRTRAALITAKILPWAVSVLKNFAFEERVV
GRVALTLEHLGGGMEPRGDIGAAGAVDQLGILWKSHPSCVAIVDALISLC
TGHIDNISRFMRRRGITTAITVLNSPDTARNSKLEERIMILVGLCAICTP
DNNREGTSLVPAILGALKRKQGRTQIELTRHTFIAIANMAECWTKEEAGY
DLGDVHGLVELVAETWISVPRSREMAFASSWALAALYRYNMDVLRHLKRR
SQDMIAVHNRWRSNIRTVEFLASLTEAVKPETKRTKTLREALRAKSRRSE
VVPDPESLESNTHKSESDAEDMCVSGDEGDLTDREKSPVSVGEASIENQT
IIVDYDSDDEQTRPFETVHEPKSKTSPNKTSPNAVHSTLKEIPIIILDSD
SDDQSAVPAEPKNPAKSKGQQKNITRTRRRKRSAILEDDITHTEKAEPEV
SVKSASTRNTITEADEDWRVTTNGIVPVHSSTRSGLPSSRVSTTAVESKQ
TMRLGAHLYLSSFQRLSASRYIDLNTWMRNTSPPCGLDSQVTSESGRLSA
NSWGS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR016024	ARM-type_fold