Ggra9989.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9989.t1
Unique Name	Ggra9989.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	485

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000213_pilon	contig	tig00000213_pilon:118522..119976 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3067.XP_002947992.1
PFAMs	Sin_N,ubiquitin
Max annot lvl	2759\|Eukaryota
Evalue	8.39e-07
EggNOG OGs	2E3C4@1\|root,2SAFQ@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9989	Ggra9989	Gracilaria gracilis GNS1m male	gene	tig00000213_pilon 118522..119976 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9989.t1.stop1	Ggra9989.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000213_pilon 118522..118524 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9989.t1.CDS1	Ggra9989.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000213_pilon 118522..119976 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9989.t1.exon1	Ggra9989.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000213_pilon 118522..119976 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9989.t1.start1	Ggra9989.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000213_pilon 119974..119976 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9989.t1	Ggra9989.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000213_pilon 118522..119976 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000213_pilon:118522..119976-
coding sequence from alignment at tig00000213_pilon:118522..119976-

mRNA sequence

>Ggra9989.t1 ID=Ggra9989.t1|Name=Ggra9989.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=485bp
MSSPDSPVVGVNAANEQSAPKKSSDEADVVIKNPTDGPGTLPFSLSLSLS
TTVAELKNELSSKYPGSPPVRAQRLIYAGKLLRDGQKLREFLSPLQQPGT
PHTIHLVVSTPQQPRSSPQSTSPSNATNTSASTSDGAATGAQAPRLPHFA
YNGHFLGGQVPLPLQEALYAQHLQLVESLLARTLQNGPGAQPDPHMLAQM
HAADIAAAAAAGNTPDGGAQPYAVPPPLQPGNGVFPGMMRMHPPVHVQNV
PHMNMGAAQHTQTQQRAQQTQQQNAHPQPPHAQQPRRFNGFQLDVHFGRH
GIQNGMRNPVNAQNQPHVRQFVFQIEINWALMAKLMFLVYFFGHEGNSGR
LYGLIILALGIYMWQTGHLRWLRRLINTALPSPGRLIENLFPQQPQQPQQ
PQQPQQPQQPGTEQVASESPPARRNPYGYPALVLSFVYSFLYGFICSLLP
AWNPQPLPRIDQIAQNPERPQEEPNAAVNHNHLD*

spliced messenger RNA

>Ggra9989.t1 ID=Ggra9989.t1|Name=Ggra9989.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1455bp|location=Sequence derived from alignment at tig00000213_pilon:118522..119976- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCTCCAGACTCTCCCGTTGTCGGCGTCAACGCAGCAAATGAACA
GTCCGCTCCAAAGAAGTCGAGTGACGAAGCTGATGTTGTTATAAAGAACC
CCACTGATGGACCTGGAACGCTACCATTTTCTCTCAGTTTGTCTCTATCT
ACTACCGTTGCTGAGCTCAAGAACGAGCTGAGTTCAAAGTATCCAGGTTC
GCCCCCTGTTCGAGCTCAGCGCCTGATATATGCTGGAAAGCTTTTGCGAG
ATGGTCAGAAGCTTCGTGAATTTCTTTCACCTCTTCAACAACCTGGAACA
CCGCATACCATTCATCTGGTGGTATCAACTCCCCAACAACCTCGTTCATC
CCCCCAGAGTACTTCGCCTTCAAACGCGACTAATACATCTGCATCTACTT
CCGATGGTGCGGCAACCGGCGCGCAGGCACCTCGGCTTCCCCACTTTGCC
TACAATGGACACTTTTTGGGAGGGCAGGTACCTCTGCCTCTTCAAGAAGC
CCTGTACGCCCAGCATTTGCAGCTTGTGGAATCCCTTCTCGCACGAACGT
TGCAAAACGGCCCCGGCGCGCAACCGGATCCTCATATGTTAGCCCAGATG
CATGCCGCGGATATTGCTGCGGCTGCGGCTGCTGGCAACACCCCCGACGG
TGGAGCGCAACCGTATGCTGTACCACCTCCGCTCCAACCTGGGAACGGCG
TGTTTCCGGGCATGATGCGCATGCACCCTCCAGTTCATGTCCAGAACGTA
CCGCATATGAATATGGGTGCTGCGCAGCACACTCAAACACAACAACGCGC
TCAACAAACTCAGCAGCAGAATGCACATCCCCAACCTCCTCATGCGCAAC
AGCCTAGGCGCTTTAATGGGTTTCAGTTGGATGTACATTTTGGAAGACAT
GGCATACAAAACGGTATGCGGAACCCAGTCAACGCTCAAAACCAGCCTCA
TGTGAGACAGTTCGTCTTCCAGATTGAGATTAACTGGGCTCTGATGGCAA
AACTGATGTTCCTAGTGTACTTCTTCGGCCATGAAGGAAACTCTGGTCGG
TTATATGGTCTCATCATTTTAGCATTGGGTATCTATATGTGGCAGACGGG
TCATCTCAGATGGTTACGTCGACTGATTAATACTGCTTTGCCAAGCCCGG
GAAGATTAATCGAGAACTTGTTTCCTCAGCAACCTCAGCAACCTCAGCAA
CCTCAGCAACCTCAGCAACCTCAGCAACCTGGTACAGAACAAGTCGCATC
GGAATCTCCACCAGCACGACGCAACCCGTATGGTTATCCGGCCCTGGTGC
TCTCGTTCGTATATTCGTTTCTTTATGGGTTTATTTGCTCTTTGTTGCCG
GCCTGGAATCCTCAGCCACTCCCGCGAATTGATCAGATAGCTCAAAACCC
TGAGCGCCCGCAAGAAGAGCCAAACGCCGCTGTAAATCACAACCATCTGG
ATTAA

protein sequence of Ggra9989.t1

>Ggra9989.t1 ID=Ggra9989.t1|Name=Ggra9989.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=485bp
MSSPDSPVVGVNAANEQSAPKKSSDEADVVIKNPTDGPGTLPFSLSLSLS
TTVAELKNELSSKYPGSPPVRAQRLIYAGKLLRDGQKLREFLSPLQQPGT
PHTIHLVVSTPQQPRSSPQSTSPSNATNTSASTSDGAATGAQAPRLPHFA
YNGHFLGGQVPLPLQEALYAQHLQLVESLLARTLQNGPGAQPDPHMLAQM
HAADIAAAAAAGNTPDGGAQPYAVPPPLQPGNGVFPGMMRMHPPVHVQNV
PHMNMGAAQHTQTQQRAQQTQQQNAHPQPPHAQQPRRFNGFQLDVHFGRH
GIQNGMRNPVNAQNQPHVRQFVFQIEINWALMAKLMFLVYFFGHEGNSGR
LYGLIILALGIYMWQTGHLRWLRRLINTALPSPGRLIENLFPQQPQQPQQ
PQQPQQPQQPGTEQVASESPPARRNPYGYPALVLSFVYSFLYGFICSLLP
AWNPQPLPRIDQIAQNPERPQEEPNAAVNHNHLD*

mRNA from alignment at tig00000213_pilon:118522..119976-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9989.t1 ID=Ggra9989.t1|Name=Ggra9989.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1455bp|location=Sequence derived from alignment at tig00000213_pilon:118522..119976- (Gracilaria gracilis GNS1m male)
ATGTCCTCTCCAGACTCTCCCGTTGTCGGCGTCAACGCAGCAAATGAACA
GTCCGCTCCAAAGAAGTCGAGTGACGAAGCTGATGTTGTTATAAAGAACC
CCACTGATGGACCTGGAACGCTACCATTTTCTCTCAGTTTGTCTCTATCT
ACTACCGTTGCTGAGCTCAAGAACGAGCTGAGTTCAAAGTATCCAGGTTC
GCCCCCTGTTCGAGCTCAGCGCCTGATATATGCTGGAAAGCTTTTGCGAG
ATGGTCAGAAGCTTCGTGAATTTCTTTCACCTCTTCAACAACCTGGAACA
CCGCATACCATTCATCTGGTGGTATCAACTCCCCAACAACCTCGTTCATC
CCCCCAGAGTACTTCGCCTTCAAACGCGACTAATACATCTGCATCTACTT
CCGATGGTGCGGCAACCGGCGCGCAGGCACCTCGGCTTCCCCACTTTGCC
TACAATGGACACTTTTTGGGAGGGCAGGTACCTCTGCCTCTTCAAGAAGC
CCTGTACGCCCAGCATTTGCAGCTTGTGGAATCCCTTCTCGCACGAACGT
TGCAAAACGGCCCCGGCGCGCAACCGGATCCTCATATGTTAGCCCAGATG
CATGCCGCGGATATTGCTGCGGCTGCGGCTGCTGGCAACACCCCCGACGG
TGGAGCGCAACCGTATGCTGTACCACCTCCGCTCCAACCTGGGAACGGCG
TGTTTCCGGGCATGATGCGCATGCACCCTCCAGTTCATGTCCAGAACGTA
CCGCATATGAATATGGGTGCTGCGCAGCACACTCAAACACAACAACGCGC
TCAACAAACTCAGCAGCAGAATGCACATCCCCAACCTCCTCATGCGCAAC
AGCCTAGGCGCTTTAATGGGTTTCAGTTGGATGTACATTTTGGAAGACAT
GGCATACAAAACGGTATGCGGAACCCAGTCAACGCTCAAAACCAGCCTCA
TGTGAGACAGTTCGTCTTCCAGATTGAGATTAACTGGGCTCTGATGGCAA
AACTGATGTTCCTAGTGTACTTCTTCGGCCATGAAGGAAACTCTGGTCGG
TTATATGGTCTCATCATTTTAGCATTGGGTATCTATATGTGGCAGACGGG
TCATCTCAGATGGTTACGTCGACTGATTAATACTGCTTTGCCAAGCCCGG
GAAGATTAATCGAGAACTTGTTTCCTCAGCAACCTCAGCAACCTCAGCAA
CCTCAGCAACCTCAGCAACCTCAGCAACCTGGTACAGAACAAGTCGCATC
GGAATCTCCACCAGCACGACGCAACCCGTATGGTTATCCGGCCCTGGTGC
TCTCGTTCGTATATTCGTTTCTTTATGGGTTTATTTGCTCTTTGTTGCCG
GCCTGGAATCCTCAGCCACTCCCGCGAATTGATCAGATAGCTCAAAACCC
TGAGCGCCCGCAAGAAGAGCCAAACGCCGCTGTAAATCACAACCATCTGG
ATTAA

Coding sequence (CDS) from alignment at tig00000213_pilon:118522..119976-

>Ggra9989.t1 ID=Ggra9989.t1|Name=Ggra9989.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1455bp|location=Sequence derived from alignment at tig00000213_pilon:118522..119976- (Gracilaria gracilis GNS1m male)
ATGTCCTCTCCAGACTCTCCCGTTGTCGGCGTCAACGCAGCAAATGAACA
GTCCGCTCCAAAGAAGTCGAGTGACGAAGCTGATGTTGTTATAAAGAACC
CCACTGATGGACCTGGAACGCTACCATTTTCTCTCAGTTTGTCTCTATCT
ACTACCGTTGCTGAGCTCAAGAACGAGCTGAGTTCAAAGTATCCAGGTTC
GCCCCCTGTTCGAGCTCAGCGCCTGATATATGCTGGAAAGCTTTTGCGAG
ATGGTCAGAAGCTTCGTGAATTTCTTTCACCTCTTCAACAACCTGGAACA
CCGCATACCATTCATCTGGTGGTATCAACTCCCCAACAACCTCGTTCATC
CCCCCAGAGTACTTCGCCTTCAAACGCGACTAATACATCTGCATCTACTT
CCGATGGTGCGGCAACCGGCGCGCAGGCACCTCGGCTTCCCCACTTTGCC
TACAATGGACACTTTTTGGGAGGGCAGGTACCTCTGCCTCTTCAAGAAGC
CCTGTACGCCCAGCATTTGCAGCTTGTGGAATCCCTTCTCGCACGAACGT
TGCAAAACGGCCCCGGCGCGCAACCGGATCCTCATATGTTAGCCCAGATG
CATGCCGCGGATATTGCTGCGGCTGCGGCTGCTGGCAACACCCCCGACGG
TGGAGCGCAACCGTATGCTGTACCACCTCCGCTCCAACCTGGGAACGGCG
TGTTTCCGGGCATGATGCGCATGCACCCTCCAGTTCATGTCCAGAACGTA
CCGCATATGAATATGGGTGCTGCGCAGCACACTCAAACACAACAACGCGC
TCAACAAACTCAGCAGCAGAATGCACATCCCCAACCTCCTCATGCGCAAC
AGCCTAGGCGCTTTAATGGGTTTCAGTTGGATGTACATTTTGGAAGACAT
GGCATACAAAACGGTATGCGGAACCCAGTCAACGCTCAAAACCAGCCTCA
TGTGAGACAGTTCGTCTTCCAGATTGAGATTAACTGGGCTCTGATGGCAA
AACTGATGTTCCTAGTGTACTTCTTCGGCCATGAAGGAAACTCTGGTCGG
TTATATGGTCTCATCATTTTAGCATTGGGTATCTATATGTGGCAGACGGG
TCATCTCAGATGGTTACGTCGACTGATTAATACTGCTTTGCCAAGCCCGG
GAAGATTAATCGAGAACTTGTTTCCTCAGCAACCTCAGCAACCTCAGCAA
CCTCAGCAACCTCAGCAACCTCAGCAACCTGGTACAGAACAAGTCGCATC
GGAATCTCCACCAGCACGACGCAACCCGTATGGTTATCCGGCCCTGGTGC
TCTCGTTCGTATATTCGTTTCTTTATGGGTTTATTTGCTCTTTGTTGCCG
GCCTGGAATCCTCAGCCACTCCCGCGAATTGATCAGATAGCTCAAAACCC
TGAGCGCCCGCAAGAAGAGCCAAACGCCGCTGTAAATCACAACCATCTGG
ATTAA