Ggra9989.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9989.t1
Unique NameGgra9989.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length485
Homology
BLAST of Ggra9989.t1 vs. uniprot
Match: A0A2V3IQ72 (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ72_9FLOR)

HSP 1 Score: 488 bits (1257), Expect = 6.300e-167
Identity = 276/493 (55.98%), Postives = 323/493 (65.52%), Query Frame = 0
Query:    1 MSSPDSPVVGVNAANEQSAPKKSSDEADVVIKNPTDGPGTLPFSLSLSLSTTVAELKNELSSKYPGSPPVRAQRLIYAGKLLRDGQKLREFLSPLQQPGTPHTIHLVVSTPQQPRSSPQSTSPSNATXXXXXXSDGAATGAQAPRLPHFAYNGHFLGGQ---VPLPLQEALYAQHLQLVESLLARTLQNGPGAQPDPHMLAQMHAADIAAAAAAGNTPDGG----AQPYAVPPPLQPGNGVFPGMMRMHPPVHVQNVPHMNMGAAQHTQTQQRAQQTQQQN-AHPQPPH-AQQPRRFNGFQLDVHFGRHGIQNGMRNPVNAQNQPHVRQFVFQIEINWALMAKLMFLVYFFGHEGNSGRLYGLIILALGIYMWQTGHLRWLRRLINTALPSPGRLIENLFPQQXXXXXXXXXXXXXXXXGTEQVASESPPARRNPYGYPALVLSFVYSFLYGFICSLLPAWNPQPLPRIDQIAQNPERPQEEPNAAVNHNHLD 484
            MSS + P    +  + QS  +K+  EAD+VIKNPTDGPGTLPF LSL +STTV  LKNEL +KYPGSP V  QRLIYAGKLL D QKLREFLSP QQ GTPHTIHLV+S PQ P+S  Q+++  N++      +D ++  AQ PRLP FAYNG   GGQ   +PL LQE  YA+HLQLVESLLA+TLQN  G  PDP +LAQM  A             G     AQPYA  PPL                   Q+VP +NM   +  Q   +   TQQ N A+PQ    A QPRRFNGFQLDV  GR G+QNG RN VN  NQPHVRQFVFQ+EINWAL+AKL FLVY  GHEGNS R+Y LI+ A+ IY+WQTGHL WLRR +N ALP+P  LIE+LFPQQ                   + A+ + PAR NPYGYPA++LSF+YSF  GF+CSLLPAWNPQPLPRI+QI QNPE   EE     NH H++
Sbjct:    1 MSSSEQPEPQESVTSGQSTSQKAKSEADLVIKNPTDGPGTLPFVLSLPVSTTVERLKNELCTKYPGSPSVETQRLIYAGKLLSDSQKLREFLSPHQQNGTPHTIHLVISAPQPPQSFSQASTTQNSSPTVNDNAD-SSPDAQPPRLPPFAYNGQLFGGQAPRIPLHLQEVEYAEHLQLVESLLAQTLQNAAGTPPDPRLLAQMQQAADMXXXXXXXXXXGSQNVRAQPYATAPPLXXXXXXXXXXXXXXXXXXXQHVPPVNMADPRTLQQNMQQPPTQQGNDANPQRARQAGQPRRFNGFQLDVQIGRAGLQNGARNGVNVPNQPHVRQFVFQLEINWALIAKLFFLVYLLGHEGNSRRMYSLIVAAIAIYLWQTGHLGWLRRFVNMALPNPRHLIEHLFPQQPS--------------SENEDAAGNTPARSNPYGYPAIMLSFIYSFXXGFVCSLLPAWNPQPLPRIEQIVQNPEHRHEEAARNANHEHVE 478          
BLAST of Ggra9989.t1 vs. uniprot
Match: R7QAY9 (Ubiquitin-like domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAY9_CHOCR)

HSP 1 Score: 187 bits (475), Expect = 1.150e-49
Identity = 165/551 (29.95%), Postives = 231/551 (41.92%), Query Frame = 0
Query:    1 MSSPDSPVVGVNAANEQSAPKKSSDEADVVIKNPTDGPGTLPFSLSLSLSTTVAELKNELSSKYPGSPPVRAQRLIYAGKLLRDGQKLREFLSPLQQPGTPHTIHLVVSTPQQPRSSPQSTSPSNATXXXXXXS--------------------------------------DGAATGAQAPRLPHFAYNG---------------------------------HFLGGQVPLP---LQEALYAQHLQLVESLLARTLQNGPGAQPDPHMLAQMHAADIAAAAAAGNTPDGGAQPYAVPPPLQPGNGVFPGMMRMHPPVHVQNVPHMNMGAAQHTQTQQRAQQTQQQNAHPQPPH--AQQPRRFNGFQLDVHFGRHGIQNGMRNPVNAQNQ-------PHVRQFVFQIEINWALMAKLMFLVYFFGHEGNSGRLYGLIILALGIYMWQTGHLRWLRRLINTALPSPGRLIENLFPQQXXXXXXXXXXXXXXXXGTEQVASESPPARRNP-----YGYPALVLSFVYSFLYGFICSLLPAWNPQPLPRIDQI 463
            MSSP +P V  +A++ +      S   ++++KNPTD PG++PF+L +++  TV  LK  L+S YPGSP V +QRLIYAGKLL+D   L   L+   +P   H IHLVVS+  +  ++    S S  +      +                                           G +  R P+    G                                 H    Q PLP   + +A YA HLQ +E ++      G G      + AQ   A  AAAAAA      GA                          H+Q    +N G                 NA P PP    Q P    GFQ  +    +G + GM   +N Q           VR++VF  E+NW L+ KL+F+VY  G EG   R+Y L+ LAL IY+WQT  L +L R+   ALP+P +L E  FP+                 GT+   S+  P  ++P     +G  A+VL F+YSF YGF+ SLLPAW P  LPR++++
Sbjct:    1 MSSPSNPPV--DASSPEGTESAESPMFNILVKNPTDRPGSMPFTLDVNVKATVRNLKELLTSSYPGSPSVTSQRLIYAGKLLKDSHSLETILTSTDRPAQ-HIIHLVVSSRHRAAAATSRASTSRTSTLAGSSAVPYQSXXXXXXXXXXXXXXXXTAPPQNYNNMFHPYVAFQQYPPGVEGQRYPYPPVPGVPPPDPSMYPLPYPPPQXXXXXXXSDVPGNVQAHRNAPQGPLPFAPMDQASYAAHLQAMERII------GDG------LAAQYTGAQEAAAAAAARGVREGADARVX--------XXXXXXXXXXAQAHIQAWTDLNAGLRN--------------NAAPAPPQNRPQGPDAGLGFQFGI---GNGAEEGMHQNLNPQENHGIEHDGARVRRYVFHFEVNWTLILKLIFVVYLLGQEGTPRRVYILLSLALVIYLWQTNRLGFLGRIAGIALPNPVQLFEAFFPR----------VQGPNEEGTQASQSDQDPNAQSPRGSSRFGRGAVVLCFIYSFFYGFVGSLLPAWRPPALPRVEEL 501          
BLAST of Ggra9989.t1 vs. uniprot
Match: M2Y6N1 (Ubiquitin-like domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y6N1_GALSU)

HSP 1 Score: 73.2 bits (178), Expect = 2.740e-10
Identity = 111/462 (24.03%), Postives = 169/462 (36.58%), Query Frame = 0
Query:   24 SDEADVVIKNPTDGPGTLPFSLSLSLSTTVAELKNELSSKYPGSPPVRAQRLIYAGKLLRDGQKLREFLSP--LQQP-GTPHTIHLVVSTPQQPRSSPQSTSPSNATXXXXXXSDGAATGAQAPRLPHFAYNGHFLGGQVPLPLQEA------LYAQHLQLVESLLARTLQNGPGAQPDPHMLAQMHAADIAAAAAAGNTPDGGAQPYAVPPPLQPGNGVFPGMMRMHPPVHVQNVPHMNMGAAQHTQTQQRAQQTQQQNAHPQPPHAQQPRRFNGFQLDVHFGRHGIQNG----MRNPVNAQNQPHV------RQFVFQIEINWALMAKLMFLVYFFGHEGNSGRLYGLIILALGIYMWQTGHLRWL----RRLINTALPSPGRLIENLFPQQXXXXXXXXXXXXXXXXGTEQVASESPPARRNPYGYPALVLSFVYSFLYGFICSLLPAWNPQPLPRIDQ 462
            +D  ++VIK P +      F  ++   +TV ELK  L  K+P  P ++ Q+LIY G++L D + +   +S    Q P  T   ++LVV      R+   S+SPS         +D   +  ++            LG   P   Q+         ++ L+L + L     Q     +     L Q+  A+I+   A G++P                   +            Q+    N+ +A                        Q+     G Q  V+   HGI        R     + QP V      R FV Q +++W L+ KL FLV   G +G+  R Y L+  A  +Y++QTG L  +      L+NT+  S    +     Q                   E+  S      RN Y         +Y FLY FICSL PAW P    R  Q
Sbjct:   21 TDIVNIVIKRPREDNDGNYFECTVPKRSTVGELKELLQQKHPSHPSLQNQQLIYGGRILGDPEPIECIISSSLYQVPEATKPVLYLVVRGEGSARTEAASSSPSAIPENHVARADRVPSSMESDLT-----EARSLGQSNPQSTQQTSSSTGNAVSETLELQQMLQRYFSQLEVSLRDWSRQLEQL--ANISGTIARGSSPS-----------------EYSAFRSDSSAGFYQS----NINSA-----------------------VQREENITGSQQQVNS--HGIDRNPPQEARRQEQGRQQPEVAAPVFQRGFVLQFQVDWQLLIKLFFLVLLLGQDGDPFRFYVLLCFAALVYLYQTGALSGILARISNLLNTSSISRPSNVSRSSHQMEGLP--------------ERRTSRFRQTIRNVY-------LKIYVFLYSFICSLFPAWQPDAAERPPQ 408          
BLAST of Ggra9989.t1 vs. uniprot
Match: A0A1X6PKS0 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PKS0_PORUM)

HSP 1 Score: 65.9 bits (159), Expect = 9.920e-8
Identity = 43/148 (29.05%), Postives = 65/148 (43.92%), Query Frame = 0
Query:  321 FVFQIEINWALMAKLMFLVYFFGHEGNSGRLYGLIILALGIYMWQTGHLRWLRRLINTALPSPGRLIENLFPQQXXXXXXXXXXXXXXXXGTEQVASESPPARRNPYGYPALVLSFVYSFLYGFICSLLPAWNPQPLPRIDQIAQNPE 468
            F  ++ ++WAL+ KL F+V+  G + +  RLY L+   + +Y+  +G L  L      A PSPGRL   + P                  G    A+   P      G  A      Y+ +YG +CSL+PAW      R D+I   P+
Sbjct:  508 FALRLHVDWALVLKLGFVVFLLGQDASHRRLYALVAGGVALYLGLSGRLAGLLAWAARAAPSPGRLAAAIAP------GGWVPDAGTGGEGAPGAATAGRPGTARMLGVCA------YALVYGLVCSLVPAW------RADEIRGVPD 637          
BLAST of Ggra9989.t1 vs. uniprot
Match: A0A8C4QKU6 (HERPUD family member 2 n=2 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4QKU6_EPTBU)

HSP 1 Score: 64.7 bits (156), Expect = 1.270e-7
Identity = 47/145 (32.41%), Postives = 71/145 (48.97%), Query Frame = 0
Query:   49 LSTTVAELKNELSSKYPGSPPVRAQRLIYAGKLLRDGQKLREFLSPLQQPGTPHTIHLVVSTPQQPRSSPQSTSPSNATXXXXXXSDGAATGAQAPRLPHFAYNGH-FLGGQVPLPLQEALYAQHLQLVESLLARTLQNGPGAQP 192
            L  TV +LK+ LSS YP  P  + QRLIY+G+LL DGQ+L++ L    +    HT+HLV  +P  P S   + SPS  +           T +   ++P   ++   +L G   L  + +LY   +         T ++GP  QP
Sbjct:   29 LEWTVHKLKSHLSSVYPSHPSTKEQRLIYSGRLLSDGQQLKDVLRKHDEF---HTVHLVCPSPSPPTSPQPAASPSGQSPSLGGYQSTDVTVSSTQQMPSTLHSSTPWLDGTDGLTERRSLYQMPVS--------TNRSGPMVQP 162          
BLAST of Ggra9989.t1 vs. uniprot
Match: A0A0F4YKB7 (Ubiquitin-like protein DskB n=1 Tax=Rasamsonia emersonii CBS 393.64 TaxID=1408163 RepID=A0A0F4YKB7_TALEM)

HSP 1 Score: 60.5 bits (145), Expect = 3.880e-6
Identity = 57/159 (35.85%), Postives = 73/159 (45.91%), Query Frame = 0
Query:   43 FSLSLSLSTTVAELKNELSSKYPGSPPVRAQRLIYAGKLLRDGQKLREFLSPLQQPGTPHTIHLVVSTPQQPRSSPQSTSPSNATXXXXXXSDGAATGAQAPRLPHFAYNGHFLGGQVPLP-LQEALYAQHLQLVESLLARTLQNGPGAQPDPHMLAQM 200
            F+L+L  STTVAELKN+LSS      P   QRLIY+G++L+D + L  +          +TIHLV S     R +P +  PS AT        GA      P +P     G    G  PL  L  A YA   QL  + +      G G  PDP  +  M
Sbjct:   25 FTLTLPTSTTVAELKNKLSSSEYADTPADRQRLIYSGRVLKDNETLATYKIK-----EGNTIHLVKSAASNQRQAPAA-QPSTAT-------SGANANQSIPGVPTNIAAGT---GNNPLAGLTGARYAGFAQLPGAGMFGP-DGGMGPPPDPEAMLSM 166          
BLAST of Ggra9989.t1 vs. uniprot
Match: U1HLY6 (Uncharacterized protein n=2 Tax=Endocarpon pusillum TaxID=364733 RepID=U1HLY6_ENDPU)

HSP 1 Score: 60.5 bits (145), Expect = 3.910e-6
Identity = 48/133 (36.09%), Postives = 65/133 (48.87%), Query Frame = 0
Query:   44 SLSLSLSTTVAELKNELSSKYPGSPPVRAQRLIYAGKLLRDGQKLREFLSPLQQPGTPHTIHLVVSTPQQPRSSPQSTSPSNATXXXXXXSDGAATGAQAPRLPHFAYNGHFLGGQVPLP-LQEALYAQHLQL 175
            +LS+ LS T  ELKN+LS+      P  +QRLIY+G++L+DG  L  +     +    +T+HLV S P   R +P+S S   AT         + TG+  PR      N     G  PL  L  A YA   QL
Sbjct:   30 TLSVPLSITTLELKNKLSTPEYAGVPASSQRLIYSGRVLKDGDTLESY-----KVKDGNTVHLVKSAPSNQRQNPESQSSRTATTD-------STTGSNVPRPTGVPSNIAAGTGNNPLAGLTGARYAGFAQL 150          
The following BLAST results are available for this feature:
BLAST of Ggra9989.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3IQ726.300e-16755.98Homocysteine-responsive endoplasmic reticulum-resi... [more]
R7QAY91.150e-4929.95Ubiquitin-like domain-containing protein n=1 Tax=C... [more]
M2Y6N12.740e-1024.03Ubiquitin-like domain-containing protein n=1 Tax=G... [more]
A0A1X6PKS09.920e-829.05Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A8C4QKU61.270e-732.41HERPUD family member 2 n=2 Tax=Eptatretus burgeri ... [more]
A0A0F4YKB73.880e-635.85Ubiquitin-like protein DskB n=1 Tax=Rasamsonia eme... [more]
U1HLY63.910e-636.09Uncharacterized protein n=2 Tax=Endocarpon pusillu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin-like domainSMARTSM00213ubq_7coord: 27..109
e-value: 0.0035
score: 26.6
IPR000626Ubiquitin-like domainPFAMPF00240ubiquitincoord: 43..109
e-value: 1.0E-9
score: 38.0
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 27..91
score: 13.837477
NoneNo IPR availableGENE3D3.10.20.90coord: 21..117
e-value: 1.5E-19
score: 71.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 462..484
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..288
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 254..280
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 387..421
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 450..484
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 427..449
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 343..348
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..320
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 366..426
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 321..342
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 349..365
NoneNo IPR availableTMHMMTMhelixcoord: 321..343
NoneNo IPR availableTMHMMTMhelixcoord: 350..372
NoneNo IPR availableTMHMMTMhelixcoord: 427..449
IPR039751Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 /2PANTHERPTHR12943HOMOCYSTEINE-RESPONSIVE ENDOPLASMIC RETICULUM-RESIDENT UNIQUITIN-LIKE DOMAIN HERPUD PROTEIN FAMILY MEMBERcoord: 26..457
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 24..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:118522..119976 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9989.t1Ggra9989.t1Gracilaria gracilis GNS1m malemRNAtig00000213_pilon 118522..119976 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9989.t1 ID=Ggra9989.t1|Name=Ggra9989.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=485bp
MSSPDSPVVGVNAANEQSAPKKSSDEADVVIKNPTDGPGTLPFSLSLSLS
TTVAELKNELSSKYPGSPPVRAQRLIYAGKLLRDGQKLREFLSPLQQPGT
PHTIHLVVSTPQQPRSSPQSTSPSNATNTSASTSDGAATGAQAPRLPHFA
YNGHFLGGQVPLPLQEALYAQHLQLVESLLARTLQNGPGAQPDPHMLAQM
HAADIAAAAAAGNTPDGGAQPYAVPPPLQPGNGVFPGMMRMHPPVHVQNV
PHMNMGAAQHTQTQQRAQQTQQQNAHPQPPHAQQPRRFNGFQLDVHFGRH
GIQNGMRNPVNAQNQPHVRQFVFQIEINWALMAKLMFLVYFFGHEGNSGR
LYGLIILALGIYMWQTGHLRWLRRLINTALPSPGRLIENLFPQQPQQPQQ
PQQPQQPQQPGTEQVASESPPARRNPYGYPALVLSFVYSFLYGFICSLLP
AWNPQPLPRIDQIAQNPERPQEEPNAAVNHNHLD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin-like_dom
IPR039751HERPUD1/2
IPR029071Ubiquitin-like_domsf