Ggra9989.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9989.t1
Unique NameGgra9989.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length485
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:118522..119976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002947992.1
PFAMsSin_N,ubiquitin
Max annot lvl2759|Eukaryota
Evalue8.39e-07
EggNOG OGs2E3C4@1|root,2SAFQ@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9989Ggra9989Gracilaria gracilis GNS1m malegenetig00000213_pilon 118522..119976 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9989.t1.stop1Ggra9989.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 118522..118524 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9989.t1.CDS1Ggra9989.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 118522..119976 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9989.t1.exon1Ggra9989.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 118522..119976 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9989.t1.start1Ggra9989.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 119974..119976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9989.t1Ggra9989.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 118522..119976 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9989.t1 ID=Ggra9989.t1|Name=Ggra9989.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=485bp
MSSPDSPVVGVNAANEQSAPKKSSDEADVVIKNPTDGPGTLPFSLSLSLS
TTVAELKNELSSKYPGSPPVRAQRLIYAGKLLRDGQKLREFLSPLQQPGT
PHTIHLVVSTPQQPRSSPQSTSPSNATNTSASTSDGAATGAQAPRLPHFA
YNGHFLGGQVPLPLQEALYAQHLQLVESLLARTLQNGPGAQPDPHMLAQM
HAADIAAAAAAGNTPDGGAQPYAVPPPLQPGNGVFPGMMRMHPPVHVQNV
PHMNMGAAQHTQTQQRAQQTQQQNAHPQPPHAQQPRRFNGFQLDVHFGRH
GIQNGMRNPVNAQNQPHVRQFVFQIEINWALMAKLMFLVYFFGHEGNSGR
LYGLIILALGIYMWQTGHLRWLRRLINTALPSPGRLIENLFPQQPQQPQQ
PQQPQQPQQPGTEQVASESPPARRNPYGYPALVLSFVYSFLYGFICSLLP
AWNPQPLPRIDQIAQNPERPQEEPNAAVNHNHLD*
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spliced messenger RNA

>Ggra9989.t1 ID=Ggra9989.t1|Name=Ggra9989.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1455bp|location=Sequence derived from alignment at tig00000213_pilon:118522..119976- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCTCCAGACTCTCCCGTTGTCGGCGTCAACGCAGCAAATGAACA
GTCCGCTCCAAAGAAGTCGAGTGACGAAGCTGATGTTGTTATAAAGAACC
CCACTGATGGACCTGGAACGCTACCATTTTCTCTCAGTTTGTCTCTATCT
ACTACCGTTGCTGAGCTCAAGAACGAGCTGAGTTCAAAGTATCCAGGTTC
GCCCCCTGTTCGAGCTCAGCGCCTGATATATGCTGGAAAGCTTTTGCGAG
ATGGTCAGAAGCTTCGTGAATTTCTTTCACCTCTTCAACAACCTGGAACA
CCGCATACCATTCATCTGGTGGTATCAACTCCCCAACAACCTCGTTCATC
CCCCCAGAGTACTTCGCCTTCAAACGCGACTAATACATCTGCATCTACTT
CCGATGGTGCGGCAACCGGCGCGCAGGCACCTCGGCTTCCCCACTTTGCC
TACAATGGACACTTTTTGGGAGGGCAGGTACCTCTGCCTCTTCAAGAAGC
CCTGTACGCCCAGCATTTGCAGCTTGTGGAATCCCTTCTCGCACGAACGT
TGCAAAACGGCCCCGGCGCGCAACCGGATCCTCATATGTTAGCCCAGATG
CATGCCGCGGATATTGCTGCGGCTGCGGCTGCTGGCAACACCCCCGACGG
TGGAGCGCAACCGTATGCTGTACCACCTCCGCTCCAACCTGGGAACGGCG
TGTTTCCGGGCATGATGCGCATGCACCCTCCAGTTCATGTCCAGAACGTA
CCGCATATGAATATGGGTGCTGCGCAGCACACTCAAACACAACAACGCGC
TCAACAAACTCAGCAGCAGAATGCACATCCCCAACCTCCTCATGCGCAAC
AGCCTAGGCGCTTTAATGGGTTTCAGTTGGATGTACATTTTGGAAGACAT
GGCATACAAAACGGTATGCGGAACCCAGTCAACGCTCAAAACCAGCCTCA
TGTGAGACAGTTCGTCTTCCAGATTGAGATTAACTGGGCTCTGATGGCAA
AACTGATGTTCCTAGTGTACTTCTTCGGCCATGAAGGAAACTCTGGTCGG
TTATATGGTCTCATCATTTTAGCATTGGGTATCTATATGTGGCAGACGGG
TCATCTCAGATGGTTACGTCGACTGATTAATACTGCTTTGCCAAGCCCGG
GAAGATTAATCGAGAACTTGTTTCCTCAGCAACCTCAGCAACCTCAGCAA
CCTCAGCAACCTCAGCAACCTCAGCAACCTGGTACAGAACAAGTCGCATC
GGAATCTCCACCAGCACGACGCAACCCGTATGGTTATCCGGCCCTGGTGC
TCTCGTTCGTATATTCGTTTCTTTATGGGTTTATTTGCTCTTTGTTGCCG
GCCTGGAATCCTCAGCCACTCCCGCGAATTGATCAGATAGCTCAAAACCC
TGAGCGCCCGCAAGAAGAGCCAAACGCCGCTGTAAATCACAACCATCTGG
ATTAA
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protein sequence of Ggra9989.t1

>Ggra9989.t1 ID=Ggra9989.t1|Name=Ggra9989.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=485bp
MSSPDSPVVGVNAANEQSAPKKSSDEADVVIKNPTDGPGTLPFSLSLSLS
TTVAELKNELSSKYPGSPPVRAQRLIYAGKLLRDGQKLREFLSPLQQPGT
PHTIHLVVSTPQQPRSSPQSTSPSNATNTSASTSDGAATGAQAPRLPHFA
YNGHFLGGQVPLPLQEALYAQHLQLVESLLARTLQNGPGAQPDPHMLAQM
HAADIAAAAAAGNTPDGGAQPYAVPPPLQPGNGVFPGMMRMHPPVHVQNV
PHMNMGAAQHTQTQQRAQQTQQQNAHPQPPHAQQPRRFNGFQLDVHFGRH
GIQNGMRNPVNAQNQPHVRQFVFQIEINWALMAKLMFLVYFFGHEGNSGR
LYGLIILALGIYMWQTGHLRWLRRLINTALPSPGRLIENLFPQQPQQPQQ
PQQPQQPQQPGTEQVASESPPARRNPYGYPALVLSFVYSFLYGFICSLLP
AWNPQPLPRIDQIAQNPERPQEEPNAAVNHNHLD*
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mRNA from alignment at tig00000213_pilon:118522..119976-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9989.t1 ID=Ggra9989.t1|Name=Ggra9989.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1455bp|location=Sequence derived from alignment at tig00000213_pilon:118522..119976- (Gracilaria gracilis GNS1m male)
ATGTCCTCTCCAGACTCTCCCGTTGTCGGCGTCAACGCAGCAAATGAACA
GTCCGCTCCAAAGAAGTCGAGTGACGAAGCTGATGTTGTTATAAAGAACC
CCACTGATGGACCTGGAACGCTACCATTTTCTCTCAGTTTGTCTCTATCT
ACTACCGTTGCTGAGCTCAAGAACGAGCTGAGTTCAAAGTATCCAGGTTC
GCCCCCTGTTCGAGCTCAGCGCCTGATATATGCTGGAAAGCTTTTGCGAG
ATGGTCAGAAGCTTCGTGAATTTCTTTCACCTCTTCAACAACCTGGAACA
CCGCATACCATTCATCTGGTGGTATCAACTCCCCAACAACCTCGTTCATC
CCCCCAGAGTACTTCGCCTTCAAACGCGACTAATACATCTGCATCTACTT
CCGATGGTGCGGCAACCGGCGCGCAGGCACCTCGGCTTCCCCACTTTGCC
TACAATGGACACTTTTTGGGAGGGCAGGTACCTCTGCCTCTTCAAGAAGC
CCTGTACGCCCAGCATTTGCAGCTTGTGGAATCCCTTCTCGCACGAACGT
TGCAAAACGGCCCCGGCGCGCAACCGGATCCTCATATGTTAGCCCAGATG
CATGCCGCGGATATTGCTGCGGCTGCGGCTGCTGGCAACACCCCCGACGG
TGGAGCGCAACCGTATGCTGTACCACCTCCGCTCCAACCTGGGAACGGCG
TGTTTCCGGGCATGATGCGCATGCACCCTCCAGTTCATGTCCAGAACGTA
CCGCATATGAATATGGGTGCTGCGCAGCACACTCAAACACAACAACGCGC
TCAACAAACTCAGCAGCAGAATGCACATCCCCAACCTCCTCATGCGCAAC
AGCCTAGGCGCTTTAATGGGTTTCAGTTGGATGTACATTTTGGAAGACAT
GGCATACAAAACGGTATGCGGAACCCAGTCAACGCTCAAAACCAGCCTCA
TGTGAGACAGTTCGTCTTCCAGATTGAGATTAACTGGGCTCTGATGGCAA
AACTGATGTTCCTAGTGTACTTCTTCGGCCATGAAGGAAACTCTGGTCGG
TTATATGGTCTCATCATTTTAGCATTGGGTATCTATATGTGGCAGACGGG
TCATCTCAGATGGTTACGTCGACTGATTAATACTGCTTTGCCAAGCCCGG
GAAGATTAATCGAGAACTTGTTTCCTCAGCAACCTCAGCAACCTCAGCAA
CCTCAGCAACCTCAGCAACCTCAGCAACCTGGTACAGAACAAGTCGCATC
GGAATCTCCACCAGCACGACGCAACCCGTATGGTTATCCGGCCCTGGTGC
TCTCGTTCGTATATTCGTTTCTTTATGGGTTTATTTGCTCTTTGTTGCCG
GCCTGGAATCCTCAGCCACTCCCGCGAATTGATCAGATAGCTCAAAACCC
TGAGCGCCCGCAAGAAGAGCCAAACGCCGCTGTAAATCACAACCATCTGG
ATTAA
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Coding sequence (CDS) from alignment at tig00000213_pilon:118522..119976-

>Ggra9989.t1 ID=Ggra9989.t1|Name=Ggra9989.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1455bp|location=Sequence derived from alignment at tig00000213_pilon:118522..119976- (Gracilaria gracilis GNS1m male)
ATGTCCTCTCCAGACTCTCCCGTTGTCGGCGTCAACGCAGCAAATGAACA
GTCCGCTCCAAAGAAGTCGAGTGACGAAGCTGATGTTGTTATAAAGAACC
CCACTGATGGACCTGGAACGCTACCATTTTCTCTCAGTTTGTCTCTATCT
ACTACCGTTGCTGAGCTCAAGAACGAGCTGAGTTCAAAGTATCCAGGTTC
GCCCCCTGTTCGAGCTCAGCGCCTGATATATGCTGGAAAGCTTTTGCGAG
ATGGTCAGAAGCTTCGTGAATTTCTTTCACCTCTTCAACAACCTGGAACA
CCGCATACCATTCATCTGGTGGTATCAACTCCCCAACAACCTCGTTCATC
CCCCCAGAGTACTTCGCCTTCAAACGCGACTAATACATCTGCATCTACTT
CCGATGGTGCGGCAACCGGCGCGCAGGCACCTCGGCTTCCCCACTTTGCC
TACAATGGACACTTTTTGGGAGGGCAGGTACCTCTGCCTCTTCAAGAAGC
CCTGTACGCCCAGCATTTGCAGCTTGTGGAATCCCTTCTCGCACGAACGT
TGCAAAACGGCCCCGGCGCGCAACCGGATCCTCATATGTTAGCCCAGATG
CATGCCGCGGATATTGCTGCGGCTGCGGCTGCTGGCAACACCCCCGACGG
TGGAGCGCAACCGTATGCTGTACCACCTCCGCTCCAACCTGGGAACGGCG
TGTTTCCGGGCATGATGCGCATGCACCCTCCAGTTCATGTCCAGAACGTA
CCGCATATGAATATGGGTGCTGCGCAGCACACTCAAACACAACAACGCGC
TCAACAAACTCAGCAGCAGAATGCACATCCCCAACCTCCTCATGCGCAAC
AGCCTAGGCGCTTTAATGGGTTTCAGTTGGATGTACATTTTGGAAGACAT
GGCATACAAAACGGTATGCGGAACCCAGTCAACGCTCAAAACCAGCCTCA
TGTGAGACAGTTCGTCTTCCAGATTGAGATTAACTGGGCTCTGATGGCAA
AACTGATGTTCCTAGTGTACTTCTTCGGCCATGAAGGAAACTCTGGTCGG
TTATATGGTCTCATCATTTTAGCATTGGGTATCTATATGTGGCAGACGGG
TCATCTCAGATGGTTACGTCGACTGATTAATACTGCTTTGCCAAGCCCGG
GAAGATTAATCGAGAACTTGTTTCCTCAGCAACCTCAGCAACCTCAGCAA
CCTCAGCAACCTCAGCAACCTCAGCAACCTGGTACAGAACAAGTCGCATC
GGAATCTCCACCAGCACGACGCAACCCGTATGGTTATCCGGCCCTGGTGC
TCTCGTTCGTATATTCGTTTCTTTATGGGTTTATTTGCTCTTTGTTGCCG
GCCTGGAATCCTCAGCCACTCCCGCGAATTGATCAGATAGCTCAAAACCC
TGAGCGCCCGCAAGAAGAGCCAAACGCCGCTGTAAATCACAACCATCTGG
ATTAA
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