Gchil7549.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7549.t1
Unique NameGchil7549.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length323
Homology
BLAST of Gchil7549.t1 vs. uniprot
Match: A0A2V3J2B1_9FLOR (General transcription factor IIF subunit 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2B1_9FLOR)

HSP 1 Score: 484 bits (1246), Expect = 2.530e-170
Identity = 252/323 (78.02%), Postives = 286/323 (88.54%), Query Frame = 0
Query:    1 MSRRGKSKAKRRNSGIPNEPDTSDLIGDTDLSNKDVQVYLVRMPTFLAQQFEDPKHGVIGRLRIPTAQQ-NQNPSPPSKSLNNPNAPRIFLDKQPVPTKTGQIAVKEFELEIQTEKPNIMIFSASRTGENPDMKVEGTAMYQCIARPKMDSTYRKMNKARTKIANTHTKQLLRMDDKSRKAAEREALRPQTMMETAKQREERKRLKEASRRHLDVPQGEWRAILEKSIFHSFEAKPHYTAEELARSVEEPVSRIRPIMNDVCAYIKSGPFSGRYELKDELKTEKQRQQKRQMLEDHKIAQMEQIRKRXXXXXXXSQATKKTKS 322
            MS+R K+++KRR+  +P+EPDTSDLIG+TDLSNKDVQVYLVRMPTFLAQQF++P+HGVIGRLRIPT+QQ N + S P  + N    P+IFLDKQP PTK GQIAVK +ELEIQT+KPNIMIFS SRT E+PDMK+EGTAMYQCIARP+MD  YR + KAR++ ANTHTKQLLRMDDKSRKAAEREALRPQTMMETAKQ+EERKR KEASRRHLDVPQGEWRA+LEKSIF SFE KPHYTAEELAR++ EPV RIRPIMNDVCAYIKSGPFSGRYELKDELKTEKQRQQKRQMLEDH++AQ+EQ+RKR       +Q TKK++S
Sbjct:    1 MSKRSKNRSKRRSGNVPSEPDTSDLIGNTDLSNKDVQVYLVRMPTFLAQQFQNPQHGVIGRLRIPTSQQGNPHNSAPGVASN---VPQIFLDKQPEPTKNGQIAVKAYELEIQTDKPNIMIFSGSRTREDPDMKIEGTAMYQCIARPRMDGRYRSVTKARSEFANTHTKQLLRMDDKSRKAAEREALRPQTMMETAKQKEERKRQKEASRRHLDVPQGEWRAMLEKSIFQSFEMKPHYTAEELARAIGEPVLRIRPIMNDVCAYIKSGPFSGRYELKDELKTEKQRQQKRQMLEDHRLAQLEQVRKRKREMEHDNQTTKKSRS 320          
BLAST of Gchil7549.t1 vs. uniprot
Match: R7QPA8_CHOCR (TFIIF_beta domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPA8_CHOCR)

HSP 1 Score: 169 bits (427), Expect = 1.320e-47
Identity = 84/203 (41.38%), Postives = 141/203 (69.46%), Query Frame = 0
Query:  104 VKEFELEIQTEKPNIMIFSASRTGENPDMKVEGTAMYQCIARPKMDSTYRKMNKARTKIANTHTKQLLRMDDKSRKAAEREALRPQTMMETAKQREERKRLKEASRRHLDVPQGEWRAILEKSIFHSFEAKPHYTAEELARSVEEPVSRIRPIMNDVCAYIKSGPFSGRYELKDELKTEKQRQQKRQMLEDHKIAQMEQIRKR 306
            V E+++E + E+  +++FS +R GEN DM++EG   +  IARPKMD+ YR ++K RT +++   ++++ M +  R+A +R+ +RP +M ET K RE+RK+ KE +RRHLDVP  E++  +  ++F +F  + HY  +EL++     + ++RPI+++VCAY KSGP+ G+Y+LKDE KT  QRQQK + L  ++  Q+E ++K+
Sbjct:    7 VTEYDIEFKEEETKVIVFSQNRIGENADMRMEGKVSHHGIARPKMDAKYRNVSKRRTLMSHKRNREIVLMGESERRAVQRDEIRPMSMTETLKDREKRKKKKEDARRHLDVPSAEYQKHVRLAVFKAFAIQAHYFGDELSKVTATGMQQLRPIISEVCAYNKSGPYQGQYDLKDEYKTVAQRQQKNRELAAYEQEQLELLQKK 209          
BLAST of Gchil7549.t1 vs. uniprot
Match: A0A7S0ZJL6_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZJL6_9RHOD)

HSP 1 Score: 132 bits (331), Expect = 3.100e-32
Identity = 88/319 (27.59%), Postives = 159/319 (49.84%), Query Frame = 0
Query:    7 SKAKRRNSGIPNEPDTSDLIGDTDLSNKDVQVYLVRMPTFLAQQFE---------DPKHGVIGRLRIPTAQQNQNPS---------PPSKSLNNPNAPRIFLDKQPVPTKTGQIAVKEFELEIQTEKPNIMIFSASRTGENPDMKVEGTAMYQCIARPKMDSTYRKMNKARTKIANTHTKQLLRMDDKSRKAAEREALRPQTMMETAKQREERKRLKEASRRHLDVPQ-GEWRAILEKSIFHSFEAKPHYTAEELARSVEEPVSRIRPIMNDVCAYIKSGPFSGRYELKDELKTEKQRQQKRQMLEDHKIAQMEQIRKR 306
            ++A R        PD     G  D +    +VYL+++P FL    +         DP   ++ +L++P    +   +         PP    +   AP     ++    +  Q    E+E++   E P  ++FS     +   M+VEG   Y C+A+P +D  Y  +N+ R + A+   +++  MDD++ + A+ + LRP   +E+ ++REE++R  E  +R  D P   +W+      +F  FE KP++  + L     E + RI+P++ ++C Y K GP++  YELKDE KT++QR +K + +   + AQME +R++
Sbjct:   18 ARAAREVDAALENPDEITPTGHCDTTFAGRKVYLLKLPEFLLTHLQQSATESNTADP---IVAKLKLPNTMDDDAENALKGSIRLLPPKPMQSGSTAPTSSTHEKKERPRIPQ----EYEVKFLPEAPRTLLFSEEPADDKGRMRVEGRVSYHCVAQPVLDEAYLAVNQQRYERASKRNREVALMDDRTLRTAQVDELRPLINVESVREREEKRRRAELMKRGSDAPMDAKWKDTTVAKLFGLFERKPYWGIKALLDETNESMQRIKPLITELCVYNKRGPYAQFYELKDEYKTKRQRDEKDEDVNARRRAQMEAVRQK 329          
BLAST of Gchil7549.t1 vs. uniprot
Match: A0A8J4V524_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V524_9MYCE)

HSP 1 Score: 70.1 bits (170), Expect = 2.440e-10
Identity = 77/268 (28.73%), Postives = 123/268 (45.90%), Query Frame = 0
Query:   19 EPDTSDLIGDTDLSNKDVQVYLVRMPTFLAQQFEDPKHGVIGRLRIPTAQQNQNPSPPSKSLNNPNAPRIFLDKQPVPTKTGQIAVKEFELEIQT----EKPNIMIFSASRTGENPDMKVEGTAMYQCIARPKMDS-TYRKMNKARTKIANTHTKQLLRMDDKSRKAAEREALRPQTMMETAKQREERKRLKEASRRHLDVPQGEWRAILEKSIFHSFEAKPHYTAEELARSVEEPVSRIRPIMNDVCAYIKSGPFSGRYELKDELKT 281
            E     L G+ ++ N D QV+L+++P FLA  +   + G IG++RI             KS +N     I L  Q VP   G    +EF+L I T    E   + IFS    G    + +EG    +C  +  +DS TYR++ K RT   NT T+    +DD       R  + P+  + TA   +++    +  R+  D        +++ SIF +F    H   + L +  ++P + ++ ++N VC + K GP    YELK E K 
Sbjct:    3 EESNDALDGEINIDNADNQVWLMKVPKFLADHWAGSQ-GSIGKIRI-------------KSGDN-----ISLTIQ-VP---GTTTTEEFQL-ITTPQNIENQPLKIFSEDAEGA---LALEGNIGLKCDIKMNLDSPTYRELMKTRTTAYNTKTRVAKTIDDNQPFLPPR-PINPKIQVSTAVYAKKKPTTDKKERKSEDQ-------VID-SIFDAFHDNNHLDIKTLVKYTDQPQTWLKTVLNKVCIFNKRGPNKNTYELKPEYKN 234          
BLAST of Gchil7549.t1 vs. uniprot
Match: A0A0L0HVX9_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HVX9_SPIPD)

HSP 1 Score: 63.9 bits (154), Expect = 7.230e-8
Identity = 58/254 (22.83%), Postives = 110/254 (43.31%), Query Frame = 0
Query:   31 LSNKDVQVYLVRMPTFLAQQFE--DPKHGVIGRLRIPTAQQNQNPSPPSKSLNN--PNAPRIFLDKQPVPTKTGQIAVKEFELEIQTEKPNIMIFSASRTGENPDMKVEGTAMYQCIARPKMDSTYRKMNKARTKIANTHTKQLLRMDDKSRKAAEREALRPQTMMETAKQREERKRLKEASRRHLDVPQGEWRAILEKSIFHSFEAKPHYTAEELARSVEEPVSRIRPIMNDVCAYIKSGPFSGRYELKDELK 280
            L N D QV+LV++P FLA+++   + +   +G + +P    +      S++ NN   N   + L  QP          K + L     KP         T      ++ G  +++    P +D  YR++ + R ++ +   + +  +D K  +           + E       RK+ ++  +  ++      R  L   IF +F+  PH+T + L    ++P + ++ ++ND+    K GP+ G YELK E K
Sbjct:   46 LDNADTQVWLVKVPKFLAEKWASVEMEDQELGSIDVPAFNSS------SRNFNNGTSNKASVHLPAQP----WADDIPKNYTLTFTNLKPQSEYIFTEDTSTGRAKELVGKVIHEGTIAPVIDDDYRQLMQRRAQMVSDKKRNIKMIDVKGDRGHTWITPVNDVIKEKGFGLMARKKPQQDKKERVE------RTELVNMIFEAFQKYPHWTFKGLVERTQQPQAWLKEVLNDLALLHKRGPYVGTYELKPEFK 283          
BLAST of Gchil7549.t1 vs. uniprot
Match: G0N387_CAEBE (General transcription factor IIF subunit 2 n=2 Tax=Caenorhabditis TaxID=6237 RepID=G0N387_CAEBE)

HSP 1 Score: 60.5 bits (145), Expect = 6.800e-7
Identity = 52/252 (20.63%), Postives = 117/252 (46.43%), Query Frame = 0
Query:   38 VYLVRMPTFLAQQFEDPKHGVIGRLRIPTAQQNQNPSPPSKSLNNP----NAPRIFLDKQPVPTKTGQIAVKEFELEIQTEKPNIMIFSASRTGENPD-------MKVEGTAMYQCIARPKMDSTYRKMNKARTKIANTHTKQLLRMDDKSRKAAEREALRPQTMMETAKQREERKRLKEASRRHLDVPQGEWRAILEKSIFHSFEAKPHYTAEELARSVEEPVSRIRPIMNDVCAYIKSGPFSGRYELKDE 278
            ++LV++P +L++ ++  + GV+G+L+I    +  +    +K LN P    +         P+P++  +I  +   +        + + S  +TG   +       + +EG  + +   RP   S Y KM  A   + NT  K+ ++M DK+    +  ++  + M+ +  +++  K  +              R +L +S+F +FE   +Y  ++L + +++PVS ++ ++ ++  Y  + P    + LK E
Sbjct:   20 IWLVKVPRYLSELWDANEGGVVGKLQIGAQVEFHS----AKGLNPPKPKDDGEGTSSTTAPMPSEASEIPTQYSFILNDVRGQTMSLLSEDKTGLGSEAAVKTGKLAIEGRIIKKAECRPPATSKYMKMKLAHI-VKNTQPKKTVKMIDKAAVKFKPVSVHAEDMIRSKAKKDGAKTYRAD------------RDVLRQSLFKAFEKHSYYRLQDLQQLLQQPVSYVKEVLQEIAVYNTAPPHKSLWCLKPE 254          
The following BLAST results are available for this feature:
BLAST of Gchil7549.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3J2B1_9FLOR2.530e-17078.02General transcription factor IIF subunit 2 n=1 Tax... [more]
R7QPA8_CHOCR1.320e-4741.38TFIIF_beta domain-containing protein n=1 Tax=Chond... [more]
A0A7S0ZJL6_9RHOD3.100e-3227.59Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A8J4V524_9MYCE2.440e-1028.73Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A0L0HVX9_SPIPD7.230e-822.83Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
G0N387_CAEBE6.800e-720.63General transcription factor IIF subunit 2 n=2 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 293..320
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 278..322
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..86
IPR040450TFIIF beta subunit, HTH domainPFAMPF02270TFIIF_betacoord: 223..280
e-value: 2.0E-8
score: 34.3
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 219..281
e-value: 1.7E-12
score: 49.2
IPR003196Transcription initiation factor IIF, beta subunitPANTHERPTHR10445GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2coord: 17..288
IPR011039Transcription Factor IIF, Rap30/Rap74, interactionSUPERFAMILY50916Rap30/74 interaction domainscoord: 28..146
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 223..280

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1866989..1867957 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7549.t1Gchil7549.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000007_pilon 1866989..1867957 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7549.t1 ID=Gchil7549.t1|Name=Gchil7549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=323bp
MSRRGKSKAKRRNSGIPNEPDTSDLIGDTDLSNKDVQVYLVRMPTFLAQQ
FEDPKHGVIGRLRIPTAQQNQNPSPPSKSLNNPNAPRIFLDKQPVPTKTG
QIAVKEFELEIQTEKPNIMIFSASRTGENPDMKVEGTAMYQCIARPKMDS
TYRKMNKARTKIANTHTKQLLRMDDKSRKAAEREALRPQTMMETAKQREE
RKRLKEASRRHLDVPQGEWRAILEKSIFHSFEAKPHYTAEELARSVEEPV
SRIRPIMNDVCAYIKSGPFSGRYELKDELKTEKQRQQKRQMLEDHKIAQM
EQIRKRKREQEQESQATKKTKS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040450TFIIF_beta_HTH
IPR036388WH-like_DNA-bd_sf
IPR003196TFIIF_beta
IPR011039TFIIF_interaction
IPR036390WH_DNA-bd_sf