Gchil7549.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7549.t1
Unique NameGchil7549.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length323
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1866989..1867957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6412.HelroP78102
Preferred nameGTF2F2
PFAMsTFIIF_beta
Max annot lvl33208|Metazoa
KEGG koko:K03139,ko:K22204
KEGG TC1.A.46.1
KEGG Pathwayko03022,map03022
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000428,GO:0000988,GO:0000990,GO:0000991,GO:0001085,GO:0001091,GO:0001096,GO:0001098,GO:0001099,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005674,GO:0005675,GO:0005856,GO:0006139,GO:0006351,GO:0006352,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015630,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032774,GO:0032784,GO:0032786,GO:0032806,GO:0032968,GO:0032991,GO:0032993,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0042221,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045893,GO:0045898,GO:0045899,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0055029,GO:0060255,GO:0060260,GO:0060261,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0080090,GO:0090304,GO:0090575,GO:0097550,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2000142,GO:2000144,GO:2001141
Evalue4.14e-09
EggNOG OGsCOG5090@1|root,KOG2905@2759|Eukaryota,38F4W@33154|Opisthokonta,3BE7H@33208|Metazoa,3CZ0K@33213|Bilateria
EC3.6.4.12
Descriptionobsolete transcription factor activity, core RNA polymerase II binding
COG categoryK
BRITEko00000,ko00001,ko01000,ko02000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7549Gchil7549Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1866989..1867957 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7549.t1.start1Gchil7549.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1866989..1866991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7549.t1.CDS1Gchil7549.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1866989..1867957 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7549.t1.exon1Gchil7549.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1866989..1867957 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7549.t1.stop1Gchil7549.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1867955..1867957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7549.t1Gchil7549.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1866989..1867957 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7549.t1 ID=Gchil7549.t1|Name=Gchil7549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=323bp
MSRRGKSKAKRRNSGIPNEPDTSDLIGDTDLSNKDVQVYLVRMPTFLAQQ
FEDPKHGVIGRLRIPTAQQNQNPSPPSKSLNNPNAPRIFLDKQPVPTKTG
QIAVKEFELEIQTEKPNIMIFSASRTGENPDMKVEGTAMYQCIARPKMDS
TYRKMNKARTKIANTHTKQLLRMDDKSRKAAEREALRPQTMMETAKQREE
RKRLKEASRRHLDVPQGEWRAILEKSIFHSFEAKPHYTAEELARSVEEPV
SRIRPIMNDVCAYIKSGPFSGRYELKDELKTEKQRQQKRQMLEDHKIAQM
EQIRKRKREQEQESQATKKTKS*
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spliced messenger RNA

>Gchil7549.t1 ID=Gchil7549.t1|Name=Gchil7549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00000007_pilon:1866989..1867957+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAGAAGGGGTAAATCGAAGGCCAAACGTCGTAACAGTGGGATCCC
GAATGAGCCGGACACTTCTGACCTAATTGGAGACACAGATTTATCAAACA
AAGATGTGCAAGTGTATCTAGTGCGGATGCCAACTTTCTTGGCGCAGCAG
TTCGAGGACCCGAAGCACGGAGTCATCGGCCGGCTTCGAATTCCCACCGC
GCAGCAAAACCAAAATCCATCGCCGCCCTCGAAGTCTCTAAACAACCCAA
ACGCACCCCGCATCTTTCTGGATAAGCAACCAGTGCCCACGAAAACCGGT
CAAATTGCAGTCAAAGAGTTCGAGCTAGAAATACAGACTGAGAAACCAAA
TATTATGATCTTCAGCGCAAGTCGCACCGGGGAAAATCCGGACATGAAGG
TCGAAGGCACTGCAATGTATCAGTGTATAGCAAGACCGAAAATGGATTCA
ACGTATCGAAAAATGAACAAGGCGCGAACAAAAATCGCGAACACGCACAC
CAAGCAACTACTTCGAATGGACGACAAGTCTAGGAAAGCAGCTGAGCGCG
AAGCGCTGAGACCGCAAACTATGATGGAAACTGCGAAACAAAGGGAGGAA
CGAAAACGTCTGAAGGAGGCATCTCGCCGCCATTTGGATGTTCCTCAAGG
TGAGTGGCGTGCTATTCTTGAAAAAAGCATTTTTCACTCGTTTGAAGCCA
AACCGCACTATACCGCTGAAGAGCTTGCCCGTTCTGTTGAAGAGCCTGTC
TCTCGAATTCGTCCAATTATGAATGATGTCTGTGCGTATATAAAATCCGG
CCCTTTTTCGGGTAGATATGAGTTGAAGGATGAACTTAAAACTGAGAAAC
AACGTCAGCAGAAGCGCCAGATGTTGGAAGACCATAAAATTGCTCAAATG
GAACAAATCCGAAAGAGAAAACGCGAGCAGGAGCAGGAAAGCCAAGCCAC
GAAAAAGACAAAGTCTTGA
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protein sequence of Gchil7549.t1

>Gchil7549.t1 ID=Gchil7549.t1|Name=Gchil7549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=323bp
MSRRGKSKAKRRNSGIPNEPDTSDLIGDTDLSNKDVQVYLVRMPTFLAQQ
FEDPKHGVIGRLRIPTAQQNQNPSPPSKSLNNPNAPRIFLDKQPVPTKTG
QIAVKEFELEIQTEKPNIMIFSASRTGENPDMKVEGTAMYQCIARPKMDS
TYRKMNKARTKIANTHTKQLLRMDDKSRKAAEREALRPQTMMETAKQREE
RKRLKEASRRHLDVPQGEWRAILEKSIFHSFEAKPHYTAEELARSVEEPV
SRIRPIMNDVCAYIKSGPFSGRYELKDELKTEKQRQQKRQMLEDHKIAQM
EQIRKRKREQEQESQATKKTKS*
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mRNA from alignment at tig00000007_pilon:1866989..1867957+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7549.t1 ID=Gchil7549.t1|Name=Gchil7549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00000007_pilon:1866989..1867957+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGAGAAGGGGTAAATCGAAGGCCAAACGTCGTAACAGTGGGATCCC
GAATGAGCCGGACACTTCTGACCTAATTGGAGACACAGATTTATCAAACA
AAGATGTGCAAGTGTATCTAGTGCGGATGCCAACTTTCTTGGCGCAGCAG
TTCGAGGACCCGAAGCACGGAGTCATCGGCCGGCTTCGAATTCCCACCGC
GCAGCAAAACCAAAATCCATCGCCGCCCTCGAAGTCTCTAAACAACCCAA
ACGCACCCCGCATCTTTCTGGATAAGCAACCAGTGCCCACGAAAACCGGT
CAAATTGCAGTCAAAGAGTTCGAGCTAGAAATACAGACTGAGAAACCAAA
TATTATGATCTTCAGCGCAAGTCGCACCGGGGAAAATCCGGACATGAAGG
TCGAAGGCACTGCAATGTATCAGTGTATAGCAAGACCGAAAATGGATTCA
ACGTATCGAAAAATGAACAAGGCGCGAACAAAAATCGCGAACACGCACAC
CAAGCAACTACTTCGAATGGACGACAAGTCTAGGAAAGCAGCTGAGCGCG
AAGCGCTGAGACCGCAAACTATGATGGAAACTGCGAAACAAAGGGAGGAA
CGAAAACGTCTGAAGGAGGCATCTCGCCGCCATTTGGATGTTCCTCAAGG
TGAGTGGCGTGCTATTCTTGAAAAAAGCATTTTTCACTCGTTTGAAGCCA
AACCGCACTATACCGCTGAAGAGCTTGCCCGTTCTGTTGAAGAGCCTGTC
TCTCGAATTCGTCCAATTATGAATGATGTCTGTGCGTATATAAAATCCGG
CCCTTTTTCGGGTAGATATGAGTTGAAGGATGAACTTAAAACTGAGAAAC
AACGTCAGCAGAAGCGCCAGATGTTGGAAGACCATAAAATTGCTCAAATG
GAACAAATCCGAAAGAGAAAACGCGAGCAGGAGCAGGAAAGCCAAGCCAC
GAAAAAGACAAAGTCTTGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:1866989..1867957+

>Gchil7549.t1 ID=Gchil7549.t1|Name=Gchil7549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=969bp|location=Sequence derived from alignment at tig00000007_pilon:1866989..1867957+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGAGAAGGGGTAAATCGAAGGCCAAACGTCGTAACAGTGGGATCCC
GAATGAGCCGGACACTTCTGACCTAATTGGAGACACAGATTTATCAAACA
AAGATGTGCAAGTGTATCTAGTGCGGATGCCAACTTTCTTGGCGCAGCAG
TTCGAGGACCCGAAGCACGGAGTCATCGGCCGGCTTCGAATTCCCACCGC
GCAGCAAAACCAAAATCCATCGCCGCCCTCGAAGTCTCTAAACAACCCAA
ACGCACCCCGCATCTTTCTGGATAAGCAACCAGTGCCCACGAAAACCGGT
CAAATTGCAGTCAAAGAGTTCGAGCTAGAAATACAGACTGAGAAACCAAA
TATTATGATCTTCAGCGCAAGTCGCACCGGGGAAAATCCGGACATGAAGG
TCGAAGGCACTGCAATGTATCAGTGTATAGCAAGACCGAAAATGGATTCA
ACGTATCGAAAAATGAACAAGGCGCGAACAAAAATCGCGAACACGCACAC
CAAGCAACTACTTCGAATGGACGACAAGTCTAGGAAAGCAGCTGAGCGCG
AAGCGCTGAGACCGCAAACTATGATGGAAACTGCGAAACAAAGGGAGGAA
CGAAAACGTCTGAAGGAGGCATCTCGCCGCCATTTGGATGTTCCTCAAGG
TGAGTGGCGTGCTATTCTTGAAAAAAGCATTTTTCACTCGTTTGAAGCCA
AACCGCACTATACCGCTGAAGAGCTTGCCCGTTCTGTTGAAGAGCCTGTC
TCTCGAATTCGTCCAATTATGAATGATGTCTGTGCGTATATAAAATCCGG
CCCTTTTTCGGGTAGATATGAGTTGAAGGATGAACTTAAAACTGAGAAAC
AACGTCAGCAGAAGCGCCAGATGTTGGAAGACCATAAAATTGCTCAAATG
GAACAAATCCGAAAGAGAAAACGCGAGCAGGAGCAGGAAAGCCAAGCCAC
GAAAAAGACAAAGTCTTGA
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