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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 65071.PYU1_T012224 |
PFAMs | Aph-1 |
Max annot lvl | 121069|Pythiales |
Evalue | 3.51e-15 |
EggNOG OGs | KOG3972@1|root,KOG3972@2759|Eukaryota,1MDPE@121069|Pythiales |
Description | Gamma-secretase subunit Aph-1. Source PGD |
COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10578.t1 ID=Gchil10578.t1|Name=Gchil10578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=242bp MTTFITIGVLLISAGPLFAFWLVTLHRRSHLLVIAILSAFTWCIAMMLTS AIWLAIPPLKSIYPWVLFLAVTIQELARFALSFGFRALLNYGENVQAFLR PGVKNDFRTSVSVGAGFGFMSVAVNFYSLFSSEFSDDTSIYVENCDINFF VAGSGFALAFYVLHVLLAIIVWPSYFKEMGWILTAAGYSLHLVASEATLI NRNQNGCQWGLIIVWILVTLTFSFTVYLTKLRFRAALTANA* back to topspliced messenger RNA >Gchil10578.t1 ID=Gchil10578.t1|Name=Gchil10578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000159_pilon:762110..762835- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGACTACCTTCATCACCATCGGTGTGCTGCTCATATCGGCCGGTCCACT CTTCGCCTTTTGGCTCGTCACTCTGCATCGCCGATCCCATTTGCTCGTTA TTGCCATTCTCTCTGCCTTCACGTGGTGTATTGCTATGATGCTCACCTCT GCCATCTGGCTTGCCATCCCTCCTCTCAAGTCCATTTATCCATGGGTTCT CTTCCTGGCTGTCACCATCCAGGAATTGGCTCGATTCGCTCTCAGCTTTG GCTTTCGAGCTCTTCTCAACTATGGCGAGAACGTGCAGGCCTTCCTCCGT CCCGGCGTCAAGAACGACTTTCGCACCAGTGTCTCGGTCGGCGCTGGATT CGGATTCATGTCCGTCGCTGTCAATTTCTACTCCCTGTTTTCGAGCGAAT TCTCTGACGACACCTCCATATATGTCGAAAACTGTGATATAAACTTTTTC GTCGCAGGCTCTGGTTTTGCCCTCGCCTTCTACGTTCTACACGTTCTTCT TGCCATTATTGTGTGGCCATCTTATTTCAAAGAAATGGGATGGATTCTCA CCGCTGCTGGTTACTCTTTGCATCTTGTCGCTTCGGAAGCCACTCTCATC AATAGAAACCAGAATGGCTGCCAATGGGGCTTGATCATTGTTTGGATCCT CGTTACCCTCACTTTCTCTTTCACTGTTTACCTCACCAAACTCAGATTTC GCGCTGCTCTAACAGCAAACGCCTAG back to topprotein sequence of Gchil10578.t1 >Gchil10578.t1 ID=Gchil10578.t1|Name=Gchil10578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=242bp
MTTFITIGVLLISAGPLFAFWLVTLHRRSHLLVIAILSAFTWCIAMMLTS AIWLAIPPLKSIYPWVLFLAVTIQELARFALSFGFRALLNYGENVQAFLR PGVKNDFRTSVSVGAGFGFMSVAVNFYSLFSSEFSDDTSIYVENCDINFF VAGSGFALAFYVLHVLLAIIVWPSYFKEMGWILTAAGYSLHLVASEATLI NRNQNGCQWGLIIVWILVTLTFSFTVYLTKLRFRAALTANA* back to topmRNA from alignment at tig00000159_pilon:762110..762835- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10578.t1 ID=Gchil10578.t1|Name=Gchil10578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000159_pilon:762110..762835- (Gracilaria chilensis NLEC103_M9 male) ATGACTACCTTCATCACCATCGGTGTGCTGCTCATATCGGCCGGTCCACT
CTTCGCCTTTTGGCTCGTCACTCTGCATCGCCGATCCCATTTGCTCGTTA
TTGCCATTCTCTCTGCCTTCACGTGGTGTATTGCTATGATGCTCACCTCT
GCCATCTGGCTTGCCATCCCTCCTCTCAAGTCCATTTATCCATGGGTTCT
CTTCCTGGCTGTCACCATCCAGGAATTGGCTCGATTCGCTCTCAGCTTTG
GCTTTCGAGCTCTTCTCAACTATGGCGAGAACGTGCAGGCCTTCCTCCGT
CCCGGCGTCAAGAACGACTTTCGCACCAGTGTCTCGGTCGGCGCTGGATT
CGGATTCATGTCCGTCGCTGTCAATTTCTACTCCCTGTTTTCGAGCGAAT
TCTCTGACGACACCTCCATATATGTCGAAAACTGTGATATAAACTTTTTC
GTCGCAGGCTCTGGTTTTGCCCTCGCCTTCTACGTTCTACACGTTCTTCT
TGCCATTATTGTGTGGCCATCTTATTTCAAAGAAATGGGATGGATTCTCA
CCGCTGCTGGTTACTCTTTGCATCTTGTCGCTTCGGAAGCCACTCTCATC
AATAGAAACCAGAATGGCTGCCAATGGGGCTTGATCATTGTTTGGATCCT
CGTTACCCTCACTTTCTCTTTCACTGTTTACCTCACCAAACTCAGATTTC
GCGCTGCTCTAACAGCAAACGCCTAG back to topCoding sequence (CDS) from alignment at tig00000159_pilon:762110..762835- >Gchil10578.t1 ID=Gchil10578.t1|Name=Gchil10578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=726bp|location=Sequence derived from alignment at tig00000159_pilon:762110..762835- (Gracilaria chilensis NLEC103_M9 male) ATGACTACCTTCATCACCATCGGTGTGCTGCTCATATCGGCCGGTCCACT CTTCGCCTTTTGGCTCGTCACTCTGCATCGCCGATCCCATTTGCTCGTTA TTGCCATTCTCTCTGCCTTCACGTGGTGTATTGCTATGATGCTCACCTCT GCCATCTGGCTTGCCATCCCTCCTCTCAAGTCCATTTATCCATGGGTTCT CTTCCTGGCTGTCACCATCCAGGAATTGGCTCGATTCGCTCTCAGCTTTG GCTTTCGAGCTCTTCTCAACTATGGCGAGAACGTGCAGGCCTTCCTCCGT CCCGGCGTCAAGAACGACTTTCGCACCAGTGTCTCGGTCGGCGCTGGATT CGGATTCATGTCCGTCGCTGTCAATTTCTACTCCCTGTTTTCGAGCGAAT TCTCTGACGACACCTCCATATATGTCGAAAACTGTGATATAAACTTTTTC GTCGCAGGCTCTGGTTTTGCCCTCGCCTTCTACGTTCTACACGTTCTTCT TGCCATTATTGTGTGGCCATCTTATTTCAAAGAAATGGGATGGATTCTCA CCGCTGCTGGTTACTCTTTGCATCTTGTCGCTTCGGAAGCCACTCTCATC AATAGAAACCAGAATGGCTGCCAATGGGGCTTGATCATTGTTTGGATCCT CGTTACCCTCACTTTCTCTTTCACTGTTTACCTCACCAAACTCAGATTTC GCGCTGCTCTAACAGCAAACGCCTAG back to top
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