Gchil10578.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil10578.t1
Unique NameGchil10578.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length242
Homology
BLAST of Gchil10578.t1 vs. uniprot
Match: A0A1X6NN64_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NN64_PORUM)

HSP 1 Score: 171 bits (434), Expect = 1.280e-49
Identity = 93/211 (44.08%), Postives = 131/211 (62.09%), Query Frame = 0
Query:    1 MTTFITIGVLLISAGPLFAFWLVTLHRRSHLLVIAILSAFTWCIAMMLTSAIWLAIPPLKSIYPWVLFLAVTIQELARFALSFGFRALLNYGENVQAFLRPGVKNDFRTSVSVGAGFGFMSVAVNFYSLFSSEFSDDTSIYVENCDINFFVAGSGFALAFYVLHVLLAIIVWPSYFKEMGWILTAAGYSLHLVASEATLINRNQNGCQWGL 211
            M T + +GVLLI+ GP     LV L  R HL +I +LSAF + +A+ +++ IW AIPP K  YP+VL +   +QE +R  L   F+ LL+ G+   AFLRPG  N   T ++VG GFG +SV  N  S  +  +  D++IY + C INFFVA    A A+ +LHVLLA+ VWP Y  +  W+  AA  ++H+  +EA+L +RN NGC+W L
Sbjct:    1 MVTLLAVGVLLIALGPTVGITLVLLLPRPHLTIIGVLSAFFYILALSVSAVIWHAIPPAKETYPYVLAMTALVQEFSRLGLHELFQYLLSMGDGADAFLRPGPINVTLTGIAVGTGFGLISVLTNLVSFMADHYMADSAIYTDKCPINFFVAAGTLAAAYSILHVLLAVWVWPFY-TDRNWLGIAAVIAVHIGVAEASLGSRNDNGCRWTL 210          
BLAST of Gchil10578.t1 vs. uniprot
Match: A0A5J4YTJ9_PORPP (Gamma-secretase subunit Aph-1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTJ9_PORPP)

HSP 1 Score: 147 bits (372), Expect = 3.190e-40
Identity = 92/219 (42.01%), Postives = 129/219 (58.90%), Query Frame = 0
Query:   10 LLISAGPLFAFWLVTL-------HRRSHLLVIAILSAFTWCIAMMLTSAIWLAIPPLKSIYPWVLFLAVTIQELARFALSFGFRALLNYGENVQAFLRPGVKNDFRTSVSVGAGFGFMSVAVNFYSLFSSEFSDDTSIYVENC-DINFFVAGSGFALAFYVLHVLLAIIVWPSYFKEMGWILTAAGYSLHLVASEATLINRNQNGCQWGLIIVWILVTL 220
            LL+S G LF     TL         R HL ++A ++AF +C+  ML +  W AIPPLK  + WVLF  VTIQE  R+A+   F  +  YGE V+AFLR G  N   T  +VGAG+G MSV +++ S+    +  D SIY+ NC +INFFVAG+ FALA+ ++H+ L ++ W  Y     ++     Y+ HL  S A++ N N+ GC + L IV+ LV L
Sbjct:    9 LLVSVGCLFLSLSATLIWGGYVIMPRPHLFIVATMAAFFYCLGQMLAAGWWFAIPPLKQEFAWVLFSTVTIQEGIRWAMFALFNWMKGYGEGVKAFLRVGAVNGLLTGFAVGAGYGLMSVLLSYTSIVGDNYWFDQSIYMPNCPEINFFVAGAAFALAYSIMHMALGVLAWSMY-DTKNYVGIFFTYAWHLGISMASIGNTNRGGCVYTLGIVYGLVVL 226          
BLAST of Gchil10578.t1 vs. uniprot
Match: F6TN99_CIOIN (Uncharacterized protein n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6TN99_CIOIN)

HSP 1 Score: 62.0 bits (149), Expect = 6.400e-8
Identity = 57/227 (25.11%), Postives = 110/227 (48.46%), Query Frame = 0
Query:    1 MTTFITIGVLLISAGPLFAFWLVTLHRRSHLLVIAILSAFTWCIAMMLTSAIWLAIPPLKSIYPWVLFLAVTIQELARFALSFGFRALLNYGENVQAFLRPGVK---NDFRTSVSVGAGFGFMSVAVNFYSLFS-----SEFSDDTSIYVENCDINFFVAGSGFALAFYVLHVLLAIIVWPSYFKEMGW-ILTAAGYSLHLVASEATLINRNQNGCQWGLIIVWILV 218
            M   +  G  +I+ GP  A +++T+ +    +++ ++ AF W +A++ ++ +WLA+ PLK    + L  +V  QE  R+ L   FR + N    +   L    K   ++ + S + G GFG M      Y LFS     S+     S+ ++    NF +  +    +  +LH    +IV+ +  K+  + ++T     LH++ S  +L+N  QN     +I+ +I++
Sbjct:    1 MPLMVFFGCTMIAFGPSLAMFILTIAKYPLKIILLVVGAFCWLLALLFSALLWLAVVPLKEQLAFSLVFSVIFQEGMRYGL---FRMMKNAENGLDDALSEDEKKSISNHKLSYTTGFGFGLM------YGLFSIVNVLSQSIGPGSVGIDGHSSNFMLISAFLTSSTILLHTFWNVIVFDALNKQQYYKVITVV--CLHMLVSCCSLLNVQQNLAYVSVIVSYIVL 216          
BLAST of Gchil10578.t1 vs. uniprot
Match: A0A5A8C948_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C948_CAFRO)

HSP 1 Score: 57.8 bits (138), Expect = 7.560e-7
Identity = 37/112 (33.04%), Postives = 59/112 (52.68%), Query Frame = 0
Query:    7 IGVLLISAGPLFAFWLVTLHRRSHLLVIAILSAFTWCIAMMLTSAIWLAIPPLKSIYPWVLFLAVTIQELARFALSFGFRALLNYGENVQAFLRPGVKNDFRTSVSVGAGFG 118
            IG  L++ GP   F+   +  RS LL+++IL+AF W +A+ +   +W+AIPPL+      L +AV  QE AR+ L     +   Y   +         ND   +++ G+GFG
Sbjct:    7 IGAALLAFGPPAVFFFGFIAPRSQLLIMSILAAFVWVVAITIAGVVWVAIPPLQEATALHLPVAVLFQEAARWCLGRIHVSAETYVVQLMPAADSMAWNDLSVALAAGSGFG 118          
BLAST of Gchil10578.t1 vs. uniprot
Match: A0A5A8CCL2_CAFRO (Uncharacterized protein n=5 Tax=Sar TaxID=2698737 RepID=A0A5A8CCL2_CAFRO)

HSP 1 Score: 57.8 bits (138), Expect = 3.400e-6
Identity = 37/112 (33.04%), Postives = 59/112 (52.68%), Query Frame = 0
Query:    7 IGVLLISAGPLFAFWLVTLHRRSHLLVIAILSAFTWCIAMMLTSAIWLAIPPLKSIYPWVLFLAVTIQELARFALSFGFRALLNYGENVQAFLRPGVKNDFRTSVSVGAGFG 118
            IG  L++ GP   F+   +  RS LL+++IL+AF W +A+ +   +W+AIPPL+      L +AV  QE AR+ L     +   Y   +         ND   +++ G+GFG
Sbjct:    7 IGAALLAFGPPAVFFFGFIAPRSQLLIMSILAAFVWVVAITIAGVVWVAIPPLQEATALHLPVAVLFQEAARWCLGRIHVSAETYVVQLMPAADSMAWNDLSVALAAGSGFG 118          
The following BLAST results are available for this feature:
BLAST of Gchil10578.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1X6NN64_PORUM1.280e-4944.08Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4YTJ9_PORPP3.190e-4042.01Gamma-secretase subunit Aph-1 n=1 Tax=Porphyridium... [more]
F6TN99_CIOIN6.400e-825.11Uncharacterized protein n=2 Tax=Ciona intestinalis... [more]
A0A5A8C948_CAFRO7.560e-733.04Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CCL2_CAFRO3.400e-633.04Uncharacterized protein n=5 Tax=Sar TaxID=2698737 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009294Gamma-secretase subunit Aph-1PFAMPF06105Aph-1coord: 5..227
e-value: 1.5E-27
score: 96.4
IPR009294Gamma-secretase subunit Aph-1PANTHERPTHR12889GAMMA-SECRETASE SUBUNIT APH-1coord: 1..226
NoneNo IPR availablePANTHERPTHR12889:SF0GAMMA-SECRETASE SUBUNIT APH-1coord: 1..226
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 209..228
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 229..241
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 131..149
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 179..197
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 31..56
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 62..89
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 57..61
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 150..172
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..24
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 25..30
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 173..178
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 198..208
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 90..109
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 110..130
NoneNo IPR availableTMHMMTMhelixcoord: 111..130
NoneNo IPR availableTMHMMTMhelixcoord: 68..90
NoneNo IPR availableTMHMMTMhelixcoord: 4..26
NoneNo IPR availableTMHMMTMhelixcoord: 150..172
NoneNo IPR availableTMHMMTMhelixcoord: 31..53
NoneNo IPR availableTMHMMTMhelixcoord: 211..228
NoneNo IPR availableTMHMMTMhelixcoord: 179..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:762110..762835 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10578.t1Gchil10578.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000159_pilon 762110..762835 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil10578.t1 ID=Gchil10578.t1|Name=Gchil10578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=242bp
MTTFITIGVLLISAGPLFAFWLVTLHRRSHLLVIAILSAFTWCIAMMLTS
AIWLAIPPLKSIYPWVLFLAVTIQELARFALSFGFRALLNYGENVQAFLR
PGVKNDFRTSVSVGAGFGFMSVAVNFYSLFSSEFSDDTSIYVENCDINFF
VAGSGFALAFYVLHVLLAIIVWPSYFKEMGWILTAAGYSLHLVASEATLI
NRNQNGCQWGLIIVWILVTLTFSFTVYLTKLRFRAALTANA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009294Aph-1