Gchil10578.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10578.t1
Unique NameGchil10578.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length242
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:762110..762835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65071.PYU1_T012224
PFAMsAph-1
Max annot lvl121069|Pythiales
Evalue3.51e-15
EggNOG OGsKOG3972@1|root,KOG3972@2759|Eukaryota,1MDPE@121069|Pythiales
DescriptionGamma-secretase subunit Aph-1. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10578Gchil10578Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 762110..762835 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10578.t1.stop1Gchil10578.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 762110..762112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10578.t1.CDS1Gchil10578.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 762110..762835 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10578.t1.exon1Gchil10578.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 762110..762835 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10578.t1.start1Gchil10578.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 762833..762835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10578.t1Gchil10578.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 762110..762835 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10578.t1 ID=Gchil10578.t1|Name=Gchil10578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=242bp
MTTFITIGVLLISAGPLFAFWLVTLHRRSHLLVIAILSAFTWCIAMMLTS
AIWLAIPPLKSIYPWVLFLAVTIQELARFALSFGFRALLNYGENVQAFLR
PGVKNDFRTSVSVGAGFGFMSVAVNFYSLFSSEFSDDTSIYVENCDINFF
VAGSGFALAFYVLHVLLAIIVWPSYFKEMGWILTAAGYSLHLVASEATLI
NRNQNGCQWGLIIVWILVTLTFSFTVYLTKLRFRAALTANA*
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spliced messenger RNA

>Gchil10578.t1 ID=Gchil10578.t1|Name=Gchil10578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000159_pilon:762110..762835- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTACCTTCATCACCATCGGTGTGCTGCTCATATCGGCCGGTCCACT
CTTCGCCTTTTGGCTCGTCACTCTGCATCGCCGATCCCATTTGCTCGTTA
TTGCCATTCTCTCTGCCTTCACGTGGTGTATTGCTATGATGCTCACCTCT
GCCATCTGGCTTGCCATCCCTCCTCTCAAGTCCATTTATCCATGGGTTCT
CTTCCTGGCTGTCACCATCCAGGAATTGGCTCGATTCGCTCTCAGCTTTG
GCTTTCGAGCTCTTCTCAACTATGGCGAGAACGTGCAGGCCTTCCTCCGT
CCCGGCGTCAAGAACGACTTTCGCACCAGTGTCTCGGTCGGCGCTGGATT
CGGATTCATGTCCGTCGCTGTCAATTTCTACTCCCTGTTTTCGAGCGAAT
TCTCTGACGACACCTCCATATATGTCGAAAACTGTGATATAAACTTTTTC
GTCGCAGGCTCTGGTTTTGCCCTCGCCTTCTACGTTCTACACGTTCTTCT
TGCCATTATTGTGTGGCCATCTTATTTCAAAGAAATGGGATGGATTCTCA
CCGCTGCTGGTTACTCTTTGCATCTTGTCGCTTCGGAAGCCACTCTCATC
AATAGAAACCAGAATGGCTGCCAATGGGGCTTGATCATTGTTTGGATCCT
CGTTACCCTCACTTTCTCTTTCACTGTTTACCTCACCAAACTCAGATTTC
GCGCTGCTCTAACAGCAAACGCCTAG
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protein sequence of Gchil10578.t1

>Gchil10578.t1 ID=Gchil10578.t1|Name=Gchil10578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=242bp
MTTFITIGVLLISAGPLFAFWLVTLHRRSHLLVIAILSAFTWCIAMMLTS
AIWLAIPPLKSIYPWVLFLAVTIQELARFALSFGFRALLNYGENVQAFLR
PGVKNDFRTSVSVGAGFGFMSVAVNFYSLFSSEFSDDTSIYVENCDINFF
VAGSGFALAFYVLHVLLAIIVWPSYFKEMGWILTAAGYSLHLVASEATLI
NRNQNGCQWGLIIVWILVTLTFSFTVYLTKLRFRAALTANA*
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mRNA from alignment at tig00000159_pilon:762110..762835-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10578.t1 ID=Gchil10578.t1|Name=Gchil10578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000159_pilon:762110..762835- (Gracilaria chilensis NLEC103_M9 male)
ATGACTACCTTCATCACCATCGGTGTGCTGCTCATATCGGCCGGTCCACT
CTTCGCCTTTTGGCTCGTCACTCTGCATCGCCGATCCCATTTGCTCGTTA
TTGCCATTCTCTCTGCCTTCACGTGGTGTATTGCTATGATGCTCACCTCT
GCCATCTGGCTTGCCATCCCTCCTCTCAAGTCCATTTATCCATGGGTTCT
CTTCCTGGCTGTCACCATCCAGGAATTGGCTCGATTCGCTCTCAGCTTTG
GCTTTCGAGCTCTTCTCAACTATGGCGAGAACGTGCAGGCCTTCCTCCGT
CCCGGCGTCAAGAACGACTTTCGCACCAGTGTCTCGGTCGGCGCTGGATT
CGGATTCATGTCCGTCGCTGTCAATTTCTACTCCCTGTTTTCGAGCGAAT
TCTCTGACGACACCTCCATATATGTCGAAAACTGTGATATAAACTTTTTC
GTCGCAGGCTCTGGTTTTGCCCTCGCCTTCTACGTTCTACACGTTCTTCT
TGCCATTATTGTGTGGCCATCTTATTTCAAAGAAATGGGATGGATTCTCA
CCGCTGCTGGTTACTCTTTGCATCTTGTCGCTTCGGAAGCCACTCTCATC
AATAGAAACCAGAATGGCTGCCAATGGGGCTTGATCATTGTTTGGATCCT
CGTTACCCTCACTTTCTCTTTCACTGTTTACCTCACCAAACTCAGATTTC
GCGCTGCTCTAACAGCAAACGCCTAG
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Coding sequence (CDS) from alignment at tig00000159_pilon:762110..762835-

>Gchil10578.t1 ID=Gchil10578.t1|Name=Gchil10578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=726bp|location=Sequence derived from alignment at tig00000159_pilon:762110..762835- (Gracilaria chilensis NLEC103_M9 male)
ATGACTACCTTCATCACCATCGGTGTGCTGCTCATATCGGCCGGTCCACT
CTTCGCCTTTTGGCTCGTCACTCTGCATCGCCGATCCCATTTGCTCGTTA
TTGCCATTCTCTCTGCCTTCACGTGGTGTATTGCTATGATGCTCACCTCT
GCCATCTGGCTTGCCATCCCTCCTCTCAAGTCCATTTATCCATGGGTTCT
CTTCCTGGCTGTCACCATCCAGGAATTGGCTCGATTCGCTCTCAGCTTTG
GCTTTCGAGCTCTTCTCAACTATGGCGAGAACGTGCAGGCCTTCCTCCGT
CCCGGCGTCAAGAACGACTTTCGCACCAGTGTCTCGGTCGGCGCTGGATT
CGGATTCATGTCCGTCGCTGTCAATTTCTACTCCCTGTTTTCGAGCGAAT
TCTCTGACGACACCTCCATATATGTCGAAAACTGTGATATAAACTTTTTC
GTCGCAGGCTCTGGTTTTGCCCTCGCCTTCTACGTTCTACACGTTCTTCT
TGCCATTATTGTGTGGCCATCTTATTTCAAAGAAATGGGATGGATTCTCA
CCGCTGCTGGTTACTCTTTGCATCTTGTCGCTTCGGAAGCCACTCTCATC
AATAGAAACCAGAATGGCTGCCAATGGGGCTTGATCATTGTTTGGATCCT
CGTTACCCTCACTTTCTCTTTCACTGTTTACCTCACCAAACTCAGATTTC
GCGCTGCTCTAACAGCAAACGCCTAG
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