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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 1089544.KB912942_gene4330 |
PFAMs | Grp1_Fun34_YaaH |
Max annot lvl | 201174|Actinobacteria |
KEGG ko | ko:K07034 |
Evalue | 1.3e-06 |
EggNOG OGs | COG1584@1|root,COG1584@2|Bacteria,2IIIX@201174|Actinobacteria,4E5A7@85010|Pseudonocardiales |
Description | GPR1/FUN34/yaaH family |
COG category | S |
BRITE | ko00000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10024.t1 ID=Gchil10024.t1|Name=Gchil10024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=233bp MPPFLLRLKGARVLQAALLSTVMSSPREQLLPLSCTDKPYRPIANPTPVG LIGFSIAITLSSVPKLLDIDPLDPLLFAVALSLGSFAQLFAAYYHFLLNN LHAANTFALFGFHWLAQALYTYSSMFATPRDQALNHSDHVFALVYNVLFA LSALVLWIPSFRIDRRLCATLFLLIVTYSFDAVALFQHRWAAIISGVAGV FASIISHYMAFAILFADACNGNISSLPLRSLT* back to topspliced messenger RNA >Gchil10024.t1 ID=Gchil10024.t1|Name=Gchil10024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00004442_pilon:456070..456768+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCGCCCTTCCTTCTCCGACTCAAGGGCGCGAGGGTCTTGCAAGCCGC CCTGCTCTCCACCGTCATGTCCTCCCCGCGAGAGCAGCTTCTCCCCCTGT CCTGCACCGACAAGCCGTATCGTCCCATCGCAAACCCCACCCCAGTCGGC CTCATTGGCTTTTCCATCGCAATCACCCTGTCTTCTGTGCCTAAGCTGCT TGACATCGACCCCCTGGATCCGCTTCTGTTTGCCGTCGCTCTGTCTCTGG GCAGTTTTGCACAGTTATTCGCCGCTTACTACCATTTCTTGCTCAACAAC CTGCACGCCGCCAACACCTTTGCCCTTTTCGGCTTTCATTGGCTCGCCCA GGCGCTGTACACTTACTCCAGCATGTTCGCAACCCCGCGCGACCAAGCCC TCAATCACTCCGACCATGTGTTTGCGCTGGTGTACAATGTATTGTTTGCG CTTTCGGCTTTGGTCCTATGGATCCCTAGTTTTCGCATTGATCGCCGTTT GTGCGCTACCTTGTTTCTGCTCATCGTCACCTATTCGTTTGACGCTGTGG CCCTGTTTCAACATCGCTGGGCCGCCATTATTTCGGGCGTGGCCGGCGTC TTTGCTTCTATCATATCGCACTACATGGCCTTTGCAATCTTATTTGCCGA CGCCTGCAATGGAAATATTTCATCATTACCACTCCGATCGTTGACATAG back to topprotein sequence of Gchil10024.t1 >Gchil10024.t1 ID=Gchil10024.t1|Name=Gchil10024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=233bp
MPPFLLRLKGARVLQAALLSTVMSSPREQLLPLSCTDKPYRPIANPTPVG LIGFSIAITLSSVPKLLDIDPLDPLLFAVALSLGSFAQLFAAYYHFLLNN LHAANTFALFGFHWLAQALYTYSSMFATPRDQALNHSDHVFALVYNVLFA LSALVLWIPSFRIDRRLCATLFLLIVTYSFDAVALFQHRWAAIISGVAGV FASIISHYMAFAILFADACNGNISSLPLRSLT* back to topmRNA from alignment at tig00004442_pilon:456070..456768+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10024.t1 ID=Gchil10024.t1|Name=Gchil10024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00004442_pilon:456070..456768+ (Gracilaria chilensis NLEC103_M9 male) ATGCCGCCCTTCCTTCTCCGACTCAAGGGCGCGAGGGTCTTGCAAGCCGC
CCTGCTCTCCACCGTCATGTCCTCCCCGCGAGAGCAGCTTCTCCCCCTGT
CCTGCACCGACAAGCCGTATCGTCCCATCGCAAACCCCACCCCAGTCGGC
CTCATTGGCTTTTCCATCGCAATCACCCTGTCTTCTGTGCCTAAGCTGCT
TGACATCGACCCCCTGGATCCGCTTCTGTTTGCCGTCGCTCTGTCTCTGG
GCAGTTTTGCACAGTTATTCGCCGCTTACTACCATTTCTTGCTCAACAAC
CTGCACGCCGCCAACACCTTTGCCCTTTTCGGCTTTCATTGGCTCGCCCA
GGCGCTGTACACTTACTCCAGCATGTTCGCAACCCCGCGCGACCAAGCCC
TCAATCACTCCGACCATGTGTTTGCGCTGGTGTACAATGTATTGTTTGCG
CTTTCGGCTTTGGTCCTATGGATCCCTAGTTTTCGCATTGATCGCCGTTT
GTGCGCTACCTTGTTTCTGCTCATCGTCACCTATTCGTTTGACGCTGTGG
CCCTGTTTCAACATCGCTGGGCCGCCATTATTTCGGGCGTGGCCGGCGTC
TTTGCTTCTATCATATCGCACTACATGGCCTTTGCAATCTTATTTGCCGA
CGCCTGCAATGGAAATATTTCATCATTACCACTCCGATCGTTGACATAG back to topCoding sequence (CDS) from alignment at tig00004442_pilon:456070..456768+ >Gchil10024.t1 ID=Gchil10024.t1|Name=Gchil10024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=699bp|location=Sequence derived from alignment at tig00004442_pilon:456070..456768+ (Gracilaria chilensis NLEC103_M9 male) ATGCCGCCCTTCCTTCTCCGACTCAAGGGCGCGAGGGTCTTGCAAGCCGC CCTGCTCTCCACCGTCATGTCCTCCCCGCGAGAGCAGCTTCTCCCCCTGT CCTGCACCGACAAGCCGTATCGTCCCATCGCAAACCCCACCCCAGTCGGC CTCATTGGCTTTTCCATCGCAATCACCCTGTCTTCTGTGCCTAAGCTGCT TGACATCGACCCCCTGGATCCGCTTCTGTTTGCCGTCGCTCTGTCTCTGG GCAGTTTTGCACAGTTATTCGCCGCTTACTACCATTTCTTGCTCAACAAC CTGCACGCCGCCAACACCTTTGCCCTTTTCGGCTTTCATTGGCTCGCCCA GGCGCTGTACACTTACTCCAGCATGTTCGCAACCCCGCGCGACCAAGCCC TCAATCACTCCGACCATGTGTTTGCGCTGGTGTACAATGTATTGTTTGCG CTTTCGGCTTTGGTCCTATGGATCCCTAGTTTTCGCATTGATCGCCGTTT GTGCGCTACCTTGTTTCTGCTCATCGTCACCTATTCGTTTGACGCTGTGG CCCTGTTTCAACATCGCTGGGCCGCCATTATTTCGGGCGTGGCCGGCGTC TTTGCTTCTATCATATCGCACTACATGGCCTTTGCAATCTTATTTGCCGA CGCCTGCAATGGAAATATTTCATCATTACCACTCCGATCGTTGACATAG back to top
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