Gchil10024.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10024.t1
Unique NameGchil10024.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length233
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:456070..456768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1089544.KB912942_gene4330
PFAMsGrp1_Fun34_YaaH
Max annot lvl201174|Actinobacteria
KEGG koko:K07034
Evalue1.3e-06
EggNOG OGsCOG1584@1|root,COG1584@2|Bacteria,2IIIX@201174|Actinobacteria,4E5A7@85010|Pseudonocardiales
DescriptionGPR1/FUN34/yaaH family
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10024Gchil10024Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 456070..456768 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10024.t1.start1Gchil10024.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 456070..456072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10024.t1.CDS1Gchil10024.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 456070..456768 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10024.t1.exon1Gchil10024.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 456070..456768 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10024.t1.stop1Gchil10024.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 456766..456768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10024.t1Gchil10024.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 456070..456768 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10024.t1 ID=Gchil10024.t1|Name=Gchil10024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=233bp
MPPFLLRLKGARVLQAALLSTVMSSPREQLLPLSCTDKPYRPIANPTPVG
LIGFSIAITLSSVPKLLDIDPLDPLLFAVALSLGSFAQLFAAYYHFLLNN
LHAANTFALFGFHWLAQALYTYSSMFATPRDQALNHSDHVFALVYNVLFA
LSALVLWIPSFRIDRRLCATLFLLIVTYSFDAVALFQHRWAAIISGVAGV
FASIISHYMAFAILFADACNGNISSLPLRSLT*
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spliced messenger RNA

>Gchil10024.t1 ID=Gchil10024.t1|Name=Gchil10024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00004442_pilon:456070..456768+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCCTTCCTTCTCCGACTCAAGGGCGCGAGGGTCTTGCAAGCCGC
CCTGCTCTCCACCGTCATGTCCTCCCCGCGAGAGCAGCTTCTCCCCCTGT
CCTGCACCGACAAGCCGTATCGTCCCATCGCAAACCCCACCCCAGTCGGC
CTCATTGGCTTTTCCATCGCAATCACCCTGTCTTCTGTGCCTAAGCTGCT
TGACATCGACCCCCTGGATCCGCTTCTGTTTGCCGTCGCTCTGTCTCTGG
GCAGTTTTGCACAGTTATTCGCCGCTTACTACCATTTCTTGCTCAACAAC
CTGCACGCCGCCAACACCTTTGCCCTTTTCGGCTTTCATTGGCTCGCCCA
GGCGCTGTACACTTACTCCAGCATGTTCGCAACCCCGCGCGACCAAGCCC
TCAATCACTCCGACCATGTGTTTGCGCTGGTGTACAATGTATTGTTTGCG
CTTTCGGCTTTGGTCCTATGGATCCCTAGTTTTCGCATTGATCGCCGTTT
GTGCGCTACCTTGTTTCTGCTCATCGTCACCTATTCGTTTGACGCTGTGG
CCCTGTTTCAACATCGCTGGGCCGCCATTATTTCGGGCGTGGCCGGCGTC
TTTGCTTCTATCATATCGCACTACATGGCCTTTGCAATCTTATTTGCCGA
CGCCTGCAATGGAAATATTTCATCATTACCACTCCGATCGTTGACATAG
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protein sequence of Gchil10024.t1

>Gchil10024.t1 ID=Gchil10024.t1|Name=Gchil10024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=233bp
MPPFLLRLKGARVLQAALLSTVMSSPREQLLPLSCTDKPYRPIANPTPVG
LIGFSIAITLSSVPKLLDIDPLDPLLFAVALSLGSFAQLFAAYYHFLLNN
LHAANTFALFGFHWLAQALYTYSSMFATPRDQALNHSDHVFALVYNVLFA
LSALVLWIPSFRIDRRLCATLFLLIVTYSFDAVALFQHRWAAIISGVAGV
FASIISHYMAFAILFADACNGNISSLPLRSLT*
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mRNA from alignment at tig00004442_pilon:456070..456768+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10024.t1 ID=Gchil10024.t1|Name=Gchil10024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00004442_pilon:456070..456768+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCCCTTCCTTCTCCGACTCAAGGGCGCGAGGGTCTTGCAAGCCGC
CCTGCTCTCCACCGTCATGTCCTCCCCGCGAGAGCAGCTTCTCCCCCTGT
CCTGCACCGACAAGCCGTATCGTCCCATCGCAAACCCCACCCCAGTCGGC
CTCATTGGCTTTTCCATCGCAATCACCCTGTCTTCTGTGCCTAAGCTGCT
TGACATCGACCCCCTGGATCCGCTTCTGTTTGCCGTCGCTCTGTCTCTGG
GCAGTTTTGCACAGTTATTCGCCGCTTACTACCATTTCTTGCTCAACAAC
CTGCACGCCGCCAACACCTTTGCCCTTTTCGGCTTTCATTGGCTCGCCCA
GGCGCTGTACACTTACTCCAGCATGTTCGCAACCCCGCGCGACCAAGCCC
TCAATCACTCCGACCATGTGTTTGCGCTGGTGTACAATGTATTGTTTGCG
CTTTCGGCTTTGGTCCTATGGATCCCTAGTTTTCGCATTGATCGCCGTTT
GTGCGCTACCTTGTTTCTGCTCATCGTCACCTATTCGTTTGACGCTGTGG
CCCTGTTTCAACATCGCTGGGCCGCCATTATTTCGGGCGTGGCCGGCGTC
TTTGCTTCTATCATATCGCACTACATGGCCTTTGCAATCTTATTTGCCGA
CGCCTGCAATGGAAATATTTCATCATTACCACTCCGATCGTTGACATAG
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Coding sequence (CDS) from alignment at tig00004442_pilon:456070..456768+

>Gchil10024.t1 ID=Gchil10024.t1|Name=Gchil10024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=699bp|location=Sequence derived from alignment at tig00004442_pilon:456070..456768+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCCCTTCCTTCTCCGACTCAAGGGCGCGAGGGTCTTGCAAGCCGC
CCTGCTCTCCACCGTCATGTCCTCCCCGCGAGAGCAGCTTCTCCCCCTGT
CCTGCACCGACAAGCCGTATCGTCCCATCGCAAACCCCACCCCAGTCGGC
CTCATTGGCTTTTCCATCGCAATCACCCTGTCTTCTGTGCCTAAGCTGCT
TGACATCGACCCCCTGGATCCGCTTCTGTTTGCCGTCGCTCTGTCTCTGG
GCAGTTTTGCACAGTTATTCGCCGCTTACTACCATTTCTTGCTCAACAAC
CTGCACGCCGCCAACACCTTTGCCCTTTTCGGCTTTCATTGGCTCGCCCA
GGCGCTGTACACTTACTCCAGCATGTTCGCAACCCCGCGCGACCAAGCCC
TCAATCACTCCGACCATGTGTTTGCGCTGGTGTACAATGTATTGTTTGCG
CTTTCGGCTTTGGTCCTATGGATCCCTAGTTTTCGCATTGATCGCCGTTT
GTGCGCTACCTTGTTTCTGCTCATCGTCACCTATTCGTTTGACGCTGTGG
CCCTGTTTCAACATCGCTGGGCCGCCATTATTTCGGGCGTGGCCGGCGTC
TTTGCTTCTATCATATCGCACTACATGGCCTTTGCAATCTTATTTGCCGA
CGCCTGCAATGGAAATATTTCATCATTACCACTCCGATCGTTGACATAG
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