Gcaud1600.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1600.t1
Unique NameGcaud1600.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length219
Homology
BLAST of Gcaud1600.t1 vs. uniprot
Match: A0A2V3IEU1_9FLOR (Chlorophyll a-b binding protein, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEU1_9FLOR)

HSP 1 Score: 414 bits (1063), Expect = 7.630e-146
Identity = 195/218 (89.45%), Postives = 209/218 (95.87%), Query Frame = 0
Query:    1 MIAFVSGFAGIPATRASAFNGASFSVRHAPVRTARFSMDASKSVPFLPQPAKLDGSMPGDVGFDPLGFSDMFDINFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSASNPLMAVSKVGWLPIVQILLFIAVCEAATGYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMVAIGGAIHHTLLTNMGLVEQIQSGKWFGGYYVH 218
            M AFVSGFAG+PATRAS+FNGA FS  H+PVRTARFSM ASKSVPFLPQPAKLDG++PGDVGFDPLGFSDMFD+NFLREAEVKHGRICMLAIVGWVFPEAVYHLPNE+YSA+NPL A+ KVGWLP++QILLFIA CEAATGYKKVYEQKCEDPGN+GFDPLNLAGTPEKKKR+QTAEIKNGRLAMVAIGGAIHH LLTNMGLVEQIQSG+WFGGYYVH
Sbjct:    1 MFAFVSGFAGLPATRASSFNGAQFSQTHSPVRTARFSMAASKSVPFLPQPAKLDGTLPGDVGFDPLGFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEMYSATNPLDAIGKVGWLPVIQILLFIAACEAATGYKKVYEQKCEDPGNFGFDPLNLAGTPEKKKRRQTAEIKNGRLAMVAIGGAIHHALLTNMGLVEQIQSGRWFGGYYVH 218          
BLAST of Gcaud1600.t1 vs. uniprot
Match: R7QMN6_CHOCR (Light-harvest protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMN6_CHOCR)

HSP 1 Score: 316 bits (809), Expect = 3.560e-107
Identity = 154/218 (70.64%), Postives = 179/218 (82.11%), Query Frame = 0
Query:    1 MIAFVSGFAGIPATRASAFNGASFSVRHAPVRTARFSMDASKSVPFLPQPAKLDGSMPGDVGFDPLGFSDMFDINFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSASNPLMAVSKVGWLPIVQILLFIAVCEAATGYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMVAIGGAIHHTLLTNMGLVEQIQSGKWFGGYYVH 218
            MIAFVSGFAG    R++AF+G S S R APV  A  SM  SKS+P++ +PAKLDGS+PGDVGFDPLG S+MF+++FLREAEVKHGRICMLAIVGWVFPE VYHLPN  YS +NPL AV  VG+LP +QILLF+AVCEAA  YKKVYEQ CE+PG++G DPL  + TPE+K   Q AEIKNGRLAM+AIGGAIHH LLTN+GL EQIQSG + GGYY+H
Sbjct:    1 MIAFVSGFAGASVARSNAFSGTSVSTRSAPV-VANVSMSMSKSIPYMERPAKLDGSLPGDVGFDPLGISNMFELDFLREAEVKHGRICMLAIVGWVFPEMVYHLPNAAYSVTNPLYAVPSVGFLPCIQILLFMAVCEAAA-YKKVYEQNCENPGDFGIDPLGFSKTPERKAHYQLAEIKNGRLAMIAIGGAIHHALLTNVGLWEQIQSGMYTGGYYIH 216          
BLAST of Gcaud1600.t1 vs. uniprot
Match: Q7XY92_GRIJA (Light-harvest protein (Fragment) n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY92_GRIJA)

HSP 1 Score: 298 bits (763), Expect = 2.530e-100
Identity = 143/202 (70.79%), Postives = 164/202 (81.19%), Query Frame = 0
Query:   17 SAFNGASFSVRHAPVRTARFSMDASKSVPFLPQPAKLDGSMPGDVGFDPLGFSDMFDINFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSASNPLMAVSKVGWLPIVQILLFIAVCEAATGYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMVAIGGAIHHTLLTNMGLVEQIQSGKWFGGYYVH 218
            +AF GA+ S   AP + ARFSMDAS SVPFL +P KLDGS+PGDVGFDP GFS+ F++NFLREAE+KHGRICMLAI+GWVFPE V HLPNE YSA+NPL AV  VGWLPI+QIL FIA+CEA  G  KVY++ C +PGNYGFDP  L   P+ K+  + AEIKNGRLAM AIGGAIHH LL N+GLVEQI SGKWFGGYY+H
Sbjct:    7 TAFAGAAVSRAAAPAK-ARFSMDASASVPFLERPPKLDGSLPGDVGFDPCGFSNAFELNFLREAELKHGRICMLAILGWVFPELVGHLPNEAYSATNPLYAVGSVGWLPIIQILAFIAICEA-KGVAKVYDENCANPGNYGFDPFGLTANPKTKQHYELAEIKNGRLAMCAIGGAIHHALLRNVGLVEQITSGKWFGGYYLH 206          
BLAST of Gcaud1600.t1 vs. uniprot
Match: A0A1X6NK41_PORUM (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A1X6NK41_PORUM)

HSP 1 Score: 200 bits (509), Expect = 1.900e-61
Identity = 107/210 (50.95%), Postives = 135/210 (64.29%), Query Frame = 0
Query:   11 IPATRASAFNGASFSVRHAPVRTARFSM----DASKSVPFLPQPAKLDGSMPGDVGFDPLGFSDMFDINFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSASNPLMAVSKVGWLPIVQILLFIAVCEAATGYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMVAIGGAIHHTLLTNMGLVEQIQSGKWFGGYY 216
            + A+  S+F GA F    AP   A        +ASKSVPF  +PA LD S  GDVGFDPLGFS+ FD+ +L EAE+KH RI ML  +G +FPE  YHLPN  YS +NPL AV  VG+ P+ QILLF+ V EA + Y+K+        G++GFDPL LA     +KR   +E+KNGRLAM+A GG IHH L+T+ G + QIQ G + GG Y
Sbjct:   16 VAASATSSFAGARFVRAAAPTAAATIDTTIRAEASKSVPFWERPASLDKSYAGDVGFDPLGFSNAFDLKWLVEAELKHCRIAMLGALGMIFPE-FYHLPNAAYSQTNPLAAVPSVGFAPVAQILLFMVVLEAIS-YQKINYNPSAPAGDFGFDPLGLAKNESARKRFALSEVKNGRLAMIACGGMIHHALITHQGPITQIQQGHFIGGDY 223          
BLAST of Gcaud1600.t1 vs. uniprot
Match: A0A7S2ZNU9_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZNU9_9RHOD)

HSP 1 Score: 194 bits (492), Expect = 4.310e-59
Identity = 107/208 (51.44%), Postives = 138/208 (66.35%), Query Frame = 0
Query:    2 IAFVSGFAGIPATRASAFNGASFSVRHAPVRTARFSMDASKSVPFLPQPAKLDGSMPGDVGFDPLGFSDMFDINFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSASNPLMAVSKVGWLPIVQILLFIAVCEAATGYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMVAIGGAIHHTLLTNMGLVEQIQSG 209
            +AFVS   G+  T++S F+G+    R  P   A  +M  S SVPFL     LD S P    FDPLGFS M+D+ FL+EAE+KHGRICMLA++GWVFPE V HLP +++S +NPL A ++V    ++QILLFI  CEA + + K+Y  +  +PG YGFDPLNL    +     + AEIKNGRLAM+AIGG IH  LLT  G+  QI+SG
Sbjct:    1 MAFVS---GVTVTKSS-FHGSRVCAR-VPKSAATITMKGSASVPFLDSVKTLDPSAPAFADFDPLGFSSMYDLKFLQEAEIKHGRICMLAVLGWVFPEFV-HLPADVFSNTNPLAAFNQVPKAGLLQILLFILACEAIS-FDKIYYTENWEPGVYGFDPLNLGKNDKSLAWYKAAEIKNGRLAMIAIGGFIHQALLTKQGVFAQIKSG 201          
BLAST of Gcaud1600.t1 vs. uniprot
Match: Q9FEM0_GALSU (Light-harvesting protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q9FEM0_GALSU)

HSP 1 Score: 191 bits (484), Expect = 8.990e-58
Identity = 92/168 (54.76%), Postives = 125/168 (74.40%), Query Frame = 0
Query:   41 SKSVPFLPQPAKLDGSMPGDVGFDPLGFSDMFDINFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSASNPLMAVSKVGWLPIVQILLFIAVCEAATGYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMVAIGGAIHHTLLTNMGLVEQIQS 208
            SK++PF P+P +LD SMPG  GFDPLGFSD FD+ FL+EAE+KH RICMLA +GWVFPE  +HLP+E++S ++PL A+ +V    ++QILL +   EA +  K  +  + ++PG++GFDPL L G  + KK  QTAEIKNGRLAM+A+G   H  LLTN G++EQ++S
Sbjct:   44 SKAIPFFPKPERLDESMPGYAGFDPLGFSDKFDVKFLQEAEIKHCRICMLAALGWVFPE-FWHLPSEVFSNTSPLAALGQVPKFGLIQILLLVVALEAISLDKLEFHPE-KEPGDFGFDPLGL-GKGKSKKWMQTAEIKNGRLAMIAMGAFFHQNLLTNQGVIEQLKS 208          
BLAST of Gcaud1600.t1 vs. uniprot
Match: M2X090_GALSU (Light-harvesting complex protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X090_GALSU)

HSP 1 Score: 189 bits (481), Expect = 2.560e-57
Identity = 92/172 (53.49%), Postives = 126/172 (73.26%), Query Frame = 0
Query:   41 SKSVPFLPQPAKLDGSMPGDVGFDPLGFSDMFDINFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSASNPLMAVSKVGWLPIVQILLFIAVCEAATGYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMVAIGGAIHHTLLTNMGLVEQIQSGKWF 212
            SK++PF P+PA+LD SMPG  GFDPLGFSD FD+ FL+EAE+KH RICMLA +GWV PE  +HLP+E++S ++PL A+ +V  L ++QILL +   EA +  K  +  + ++PG++GFDPL L G    KK  QTAE+KNGRLAM+A+G   H  LLTN G+ EQ+++  +F
Sbjct:   44 SKAIPFFPKPARLDESMPGYAGFDPLGFSDKFDVKFLQEAEIKHCRICMLAALGWVVPE-FWHLPSEVFSNTSPLAALGQVPKLGLIQILLLVLALEAISLDKITFHPE-KEPGDFGFDPLGL-GKGNAKKWMQTAELKNGRLAMIAMGAFFHQNLLTNQGIFEQLRTHNFF 212          
BLAST of Gcaud1600.t1 vs. uniprot
Match: P93449_PORPP (Light-harvesting complex I polypeptide n=2 Tax=Porphyridium purpureum TaxID=35688 RepID=P93449_PORPP)

HSP 1 Score: 179 bits (453), Expect = 4.780e-53
Identity = 102/217 (47.00%), Postives = 141/217 (64.98%), Query Frame = 0
Query:    3 AFVSGFAGI-PATRASAFNGASFSVRHA-PVRTARFSMDA--SKSVPFLPQPAKLDGSMPGDVGFDPLGFSDMFDINFLREAEVKHGRICMLAIVGWVFPEAV----YHLPNEIYSASNPLMAVSKVGWLPIVQILLFIAVCEAATGYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMVAIGGAIHHTLLTNMGLVEQIQSGKW 211
            AFVSG  G  P  + +A    S SV+ A PV+  R +M A  SKS+PFL +P  LDGSM GDVGFDPLGFSD +D+ FLREAE+KHGRICMLA +G+++PE +       P   ++  NPL AV  +    ++QI+LF+ V EA + + KV+  K   PG++ FDPL L     K  + + +E+KNGRLAM+A+GG IH  LLT   ++ Q+++G +
Sbjct:    4 AFVSGGRGAGPVDKVAAIQ--SKSVKAAVPVKAGRIAMMAEMSKSIPFLEKPKNLDGSMAGDVGFDPLGFSDKWDVKFLREAELKHGRICMLAALGFIYPEIMGGKSIPSPEGYFTELNPLKAVKAIPTAGLLQIVLFVMVLEAIS-WNKVFMDKTSAPGDFKFDPLGL-----KSPKMELSEVKNGRLAMIAVGGMIHQVLLTKQPILAQLKNGPY 212          
BLAST of Gcaud1600.t1 vs. uniprot
Match: L1ID46_GUITC (Light-harvesting Chl a protein 3 n=4 Tax=Geminigeraceae TaxID=589343 RepID=L1ID46_GUITC)

HSP 1 Score: 176 bits (446), Expect = 4.830e-52
Identity = 89/175 (50.86%), Postives = 115/175 (65.71%), Query Frame = 0
Query:   41 SKSVPFLPQPAKLDGSMPGDVGFDPLGFSDMFDINFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSASNPLMA---VSKVGWLPIVQILLFIAVCEAATGYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMVAIGGAIHHTLLTNMGLVEQIQSGKWF 212
            S+++PFL +P KLD SMPG  GFDPLGFSD +D+ +L+EAE+KHGRICMLA+VG   PE +  LP     ++NPL A   +S  GWL   QI +FI +CE+ +  K  Y  K   PG+ GFDPL L   P  +K    AE+KNGRLAM+  GG +HH LLT MG  +QI   K++
Sbjct:   42 SEAIPFLEKPKKLDSSMPGYAGFDPLGFSDYYDVKWLQEAEIKHGRICMLAVVGMFHPE-IAKLPQFASFSTNPLEAFYQLSFAGWL---QIFVFIGICESFSFEKVYYTDKA--PGDLGFDPLRLGSNPASRKYYANAEVKNGRLAMIGFGGMLHHALLTKMGPFQQIAEQKFY 210          
BLAST of Gcaud1600.t1 vs. uniprot
Match: Q8RW55_GALSU (Light-harvesting protein n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q8RW55_GALSU)

HSP 1 Score: 175 bits (444), Expect = 1.030e-51
Identity = 89/175 (50.86%), Postives = 120/175 (68.57%), Query Frame = 0
Query:   41 SKSVPFLPQPAKLDGSMPGDVGFDPLGFSDMFDINFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSASNPLMAVSK-VGWLPIVQILLFIAVCE--AATGYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMVAIGGAIHHTLLTNMGLVEQIQSGKWF 212
            SK++PFL +P  LDGSM GDVGFDPL  S   D+ +LRE+E+KH RI MLA+VGW F + V+HLPN IYSAS+P  A  K +   P+ QI+L+ +  E  +     ++ +    +PG +GFDPL L   P+  KR Q +E+KNGRLAM+AIGG IH + LT+MG ++Q+Q  KWF
Sbjct:   46 SKAIPFLDRPPALDGSMVGDVGFDPLNISSYLDLRWLRESELKHCRIAMLAVVGW-FVQEVFHLPNXIYSASDPTEAFWKTLATGPMGQIVLWTSFFEIISTPAVIQMLQGSGREPGYFGFDPLGLGKNPQLYKRFQLSELKNGRLAMIAIGGLIHQSFLTHMGAIQQLQQHKWF 219          
The following BLAST results are available for this feature:
BLAST of Gcaud1600.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IEU1_9FLOR7.630e-14689.45Chlorophyll a-b binding protein, chloroplastic n=1... [more]
R7QMN6_CHOCR3.560e-10770.64Light-harvest protein n=1 Tax=Chondrus crispus Tax... [more]
Q7XY92_GRIJA2.530e-10070.79Light-harvest protein (Fragment) n=1 Tax=Griffiths... [more]
A0A1X6NK41_PORUM1.900e-6150.95Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A7S2ZNU9_9RHOD4.310e-5951.44Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
Q9FEM0_GALSU8.990e-5854.76Light-harvesting protein n=1 Tax=Galdieria sulphur... [more]
M2X090_GALSU2.560e-5753.49Light-harvesting complex protein n=1 Tax=Galdieria... [more]
P93449_PORPP4.780e-5347.00Light-harvesting complex I polypeptide n=2 Tax=Por... [more]
L1ID46_GUITC4.830e-5250.86Light-harvesting Chl a protein 3 n=4 Tax=Geminiger... [more]
Q8RW55_GALSU1.030e-5150.86Light-harvesting protein n=2 Tax=Galdieria sulphur... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 39..211
e-value: 7.0E-47
score: 161.9
NoneNo IPR availablePANTHERPTHR21649:SF125CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTICcoord: 17..206
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..218
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 38..207
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 50..195
e-value: 2.9E-42
score: 144.9
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 17..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2600_length_5190_cov_3.487154contigNODE_2600_length_5190_cov_3.487154:2892..3734 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1600.t1Gcaud1600.t1Gracilaria caudata M_176_S67 malemRNANODE_2600_length_5190_cov_3.487154 2892..3734 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1600.t1 ID=Gcaud1600.t1|Name=Gcaud1600.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=219bp
MIAFVSGFAGIPATRASAFNGASFSVRHAPVRTARFSMDASKSVPFLPQP
AKLDGSMPGDVGFDPLGFSDMFDINFLREAEVKHGRICMLAIVGWVFPEA
VYHLPNEIYSASNPLMAVSKVGWLPIVQILLFIAVCEAATGYKKVYEQKC
EDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMVAIGGAIHHTLLTNM
GLVEQIQSGKWFGGYYVH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln