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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 130081.XP_005706265.1 |
| PFAMs | Chloroa_b-bind |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K08907 |
| KEGG Pathway | ko00196,map00196 |
| Evalue | 1.26e-57 |
| EggNOG OGs | 2CDPH@1|root,2SPER@2759|Eukaryota |
| Description | Chlorophyll A-B binding protein |
| COG category | U |
| BRITE | ko00000,ko00001,ko00194 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1600.t1.stop1 | Gcaud1600.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_2600_length_5190_cov_3.487154 2892..2894 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1600.t1.start1 | Gcaud1600.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_2600_length_5190_cov_3.487154 3732..3734 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1600.t1 ID=Gcaud1600.t1|Name=Gcaud1600.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=219bp
MIAFVSGFAGIPATRASAFNGASFSVRHAPVRTARFSMDASKSVPFLPQP
AKLDGSMPGDVGFDPLGFSDMFDINFLREAEVKHGRICMLAIVGWVFPEA
VYHLPNEIYSASNPLMAVSKVGWLPIVQILLFIAVCEAATGYKKVYEQKC
EDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMVAIGGAIHHTLLTNM
GLVEQIQSGKWFGGYYVH* back to topspliced messenger RNA >Gcaud1600.t1 ID=Gcaud1600.t1|Name=Gcaud1600.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=657bp|location=Sequence derived from alignment at NODE_2600_length_5190_cov_3.487154:2892..3734- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGATTGCGTTTGTCTCTGGCTTCGCCGGAATCCCGGCCACGCGCGCGTC
TGCTTTCAACGGCGCCTCCTTCTCTGTGCGTCATGCGCCAGTCAGAACTG
CGCGTTTCTCCATGGACGCCAGCAAGTCCGTTCCATTCCTGCCGCAGCCA
GCAAAGCTCGACGGCTCCATGCCTGGCGATGTTGGTTTCGACCCGCTTGG
TTTCTCTGACATGTTTGACATCAACTTTCTTCGCGAAGCTGAGGTGAAGC
ACGGTCGTATTTGTATGCTTGCCATCGTTGGATGGGTGTTCCCGGAGGCT
GTGTACCATCTTCCCAACGAGATCTACTCTGCTTCCAATCCGCTCATGGC
CGTCTCCAAGGTTGGGTGGTTGCCCATCGTTCAAATTCTTCTCTTCATTG
CCGTGTGTGAGGCCGCCACCGGCTACAAGAAGGTGTACGAACAGAAGTGT
GAGGACCCCGGCAACTACGGCTTCGACCCTCTCAACCTTGCTGGAACGCC
CGAGAAGAAGAAGCGCCAGCAAACTGCCGAGATTAAGAATGGTCGTCTTG
CAATGGTTGCCATTGGCGGCGCCATTCACCATACTCTGCTCACTAACATG
GGTCTGGTTGAACAAATCCAGTCTGGAAAGTGGTTCGGCGGATATTACGT
GCATTAA back to topprotein sequence of Gcaud1600.t1 >Gcaud1600.t1 ID=Gcaud1600.t1|Name=Gcaud1600.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=219bp
MIAFVSGFAGIPATRASAFNGASFSVRHAPVRTARFSMDASKSVPFLPQP
AKLDGSMPGDVGFDPLGFSDMFDINFLREAEVKHGRICMLAIVGWVFPEA
VYHLPNEIYSASNPLMAVSKVGWLPIVQILLFIAVCEAATGYKKVYEQKC
EDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMVAIGGAIHHTLLTNM
GLVEQIQSGKWFGGYYVH* back to topmRNA from alignment at NODE_2600_length_5190_cov_3.487154:2892..3734- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1600.t1 ID=Gcaud1600.t1|Name=Gcaud1600.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=843bp|location=Sequence derived from alignment at NODE_2600_length_5190_cov_3.487154:2892..3734- (Gracilaria caudata M_176_S67 male)
ATGATTGCGTTTGTCTCTGGCTTCGCCGGAATCCCGGCCACGCGCGCGTC
TGCTTTCAACGGCGCCTCCTTCTCTGTGCGTCATGCGCCAGTCAGAACTG
CGCGTTTCTCCATGGACGCCAGCAAGTCCGTTCCATTCCTGCCGCAGCCA
GCAAAGCTCGACGGCTCCATGCCTGGCGATGTTGGTTTCGACCCGCTTGG
TTTCTCTGACATGTTTGACATCAACTTTCTTCGCGAAGCTGAGGTGAAGC
ACGGTACGTTTTTTTGTATACCCTAACAGCTCTTATCTGGCATTTGAACA
GTGCTGACTTCGTATGTTTGCTTGCTTTGGTAATGGTGAAAACAACAGGT
CGTATTTGTATGCTTGCCATCGTTGGATGGGTGTTCCCGGAGGCTGTGTA
CCATCTTCCCAACGAGATCTACTCTGCTTCCAATCCGCTCATGGCCGTCT
CCAAGGTTGGGTGGTTGCCCATCGTTCAAATTCTTCTCTTCATTGCCGTG
TGTGAGGCCGCCACCGGCTACAAGAAGGTGTACGAACAGAAGTGTGAGGA
CCCCGGCAACTACGGCTTCGACCCTCTCAACCTTGCTGGAACGCCCGAGA
AGAAGAAGCGCCAGCAAACTGCCGAGATTAAGAATGGTCGTCTTGCAATG
GTTGCCATTGGCGGCGCCATTCACCATACTCTGCTCACTAACATGGGTCT
GGTTGAACAAATCCAGTCTGGAAAGTGGTGTAAGTTACGCTCATTGTGTA
CCGATTGTGTCACTGCTTGTGCCGTGGTGACGATCAGCACTAACATGTCT
GTTTTGTTTTTTGTGTTTAGTCGGCGGATATTACGTGCATTAA back to topCoding sequence (CDS) from alignment at NODE_2600_length_5190_cov_3.487154:2892..3734- >Gcaud1600.t1 ID=Gcaud1600.t1|Name=Gcaud1600.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=657bp|location=Sequence derived from alignment at NODE_2600_length_5190_cov_3.487154:2892..3734- (Gracilaria caudata M_176_S67 male)
ATGATTGCGTTTGTCTCTGGCTTCGCCGGAATCCCGGCCACGCGCGCGTC
TGCTTTCAACGGCGCCTCCTTCTCTGTGCGTCATGCGCCAGTCAGAACTG
CGCGTTTCTCCATGGACGCCAGCAAGTCCGTTCCATTCCTGCCGCAGCCA
GCAAAGCTCGACGGCTCCATGCCTGGCGATGTTGGTTTCGACCCGCTTGG
TTTCTCTGACATGTTTGACATCAACTTTCTTCGCGAAGCTGAGGTGAAGC
ACGGTCGTATTTGTATGCTTGCCATCGTTGGATGGGTGTTCCCGGAGGCT
GTGTACCATCTTCCCAACGAGATCTACTCTGCTTCCAATCCGCTCATGGC
CGTCTCCAAGGTTGGGTGGTTGCCCATCGTTCAAATTCTTCTCTTCATTG
CCGTGTGTGAGGCCGCCACCGGCTACAAGAAGGTGTACGAACAGAAGTGT
GAGGACCCCGGCAACTACGGCTTCGACCCTCTCAACCTTGCTGGAACGCC
CGAGAAGAAGAAGCGCCAGCAAACTGCCGAGATTAAGAATGGTCGTCTTG
CAATGGTTGCCATTGGCGGCGCCATTCACCATACTCTGCTCACTAACATG
GGTCTGGTTGAACAAATCCAGTCTGGAAAGTGGTTCGGCGGATATTACGT
GCATTAA back to top
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