Gcaud2599.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2599.t1
Unique NameGcaud2599.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length476
Homology
BLAST of Gcaud2599.t1 vs. uniprot
Match: A0A2V3IWI4_9FLOR (ATP-dependent RNA helicase DEAH11, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWI4_9FLOR)

HSP 1 Score: 499 bits (1284), Expect = 3.810e-171
Identity = 241/472 (51.06%), Postives = 308/472 (65.25%), Query Frame = 0
Query:    1 MAAPETDYLLALRMQLRENGAGDFDVADMLGLDTHAHTSYETLRSQAVAQSLEASNQLVASDSKFARNLAASQHGLDLDKCIAQLEPDQCASQDER---TVECQICFDEFLPQLAFASKDCKHHFCYPCFVQYLRLVIERGHPYPITCPSCRTVWDNQTCLTALSGTGDDYHALERLIINKDYTKKIRYCANSKCATPFDWIVDDAGGQNIAQIARVLCPFCDTETCAICRCVWHEDETCEEYAIRQDLESLSVLTRAKKWMRCPDCGHLIEKRAGDCAFVRCTCGCGFCHYCGMAYMSLEPTSENVHGMPGCRCALFPPADVEQPAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPVPVVXXXXXYPGVIGPNGHVNVEKCLGEEGPRE-MGGPLPGAMLDCLANAVCPYEECGLKFQSVRSLEQHLAFVQRHEVYLCCERPFYQYASLRNHQVNNH 468
            M+   +DYL+AL++QL+ENGA DF+   +L  ++    SY   +   +A +LEA+N+ +  D   AR +AA ++GL +D  +      Q +S       T ECQICF+ F+P + F S  C H FC+ C  QYL+LV++RGHPYPI CPSCR +  N+ CL+ALSGTG +Y ALERLIINKD+TK+IRYCANSKCA PFDW+ D+AG  ++ + ARV+CPFCDTETCA+CRCVWHED+TCEE+++++D+E LSVL+R   W RCPDCGHLIEKR GDCAFV C CGCGFCH CG AY SL+PT +NVHG PGCRCALFP  +       X                                       +   +      + G+ GPNG VN+  CL  EG  + MG PLP AM+  L N  CPYEEC +KF+S+R+LEQHLAFVQRH+V+LCC RPFY  AS+ NH  NNH
Sbjct:    1 MSTAASDYLVALKLQLQENGADDFNSLHVLSTNSDESLSYHPNQDLVLAYTLEAANRRIVEDYALARAIAAKENGLPVD--VEDQNKHQLSSTKNAKHATSECQICFEAFVPNMTFNSGTCDHTFCFSCMSQYLKLVVQRGHPYPINCPSCRVIIPNEKCLSALSGTGKEYEALERLIINKDFTKRIRYCANSKCAMPFDWVFDNAGAHDVREQARVMCPFCDTETCALCRCVWHEDQTCEEHSLQKDMEELSVLSRQNNWRRCPDCGHLIEKRTGDCAFVTCKCGCGFCHTCGSAYTSLDPTWDNVHGRPGCRCALFPEPEEXXXXXXXALPVDNILPRRIARRLNIIAPENDVVPEDAVDVPVRANARANVIAPERIYHDGLWGPNGRVNLRLCL--EGRHQFMGAPLPQAMIQSLENWTCPYEECEVKFRSLRALEQHLAFVQRHQVHLCCARPFYTCASMMNHIRNNH 468          
BLAST of Gcaud2599.t1 vs. uniprot
Match: A0A2K2A129_POPTR (Uncharacterized protein n=4 Tax=Saliceae TaxID=238069 RepID=A0A2K2A129_POPTR)

HSP 1 Score: 97.1 bits (240), Expect = 4.050e-19
Identity = 64/237 (27.00%), Postives = 100/237 (42.19%), Query Frame = 0
Query:   86 EPDQCASQDERTVECQICFDEFLPQLAFASKD-CKHHFCYPCFVQYLRLVIERGHPYPITCP--SCRTVWDNQTCLTALSGTGDDYHALERLIINK--DYTKKIRYCANSKCATPFDWIVDDAGGQNIAQIARVLCPFCDTETCAICRCVWHEDETCEEYAIRQDLESLSV--LTRAKKWMRCPDCGHLIEKRAGDCAFVRCTCGCGFCHYCGMAYMSLEPTSENVHGMPGCRCALF 315
            EP Q   +++    C+IC +  L    F +   CKH FC  C  +Y+ + +E      I CP  +C+ + D  +C   +S          + I  K  D+        +  C  P+         +   ++ ++ CP C    C +C+  WH    C E    +D   + V  L   KKW RC +CGH +E+ +G C  ++C CG  FCH CG  +    P S    G   C   +F
Sbjct:   15 EPGQLQQEEDSNFTCEICIEPMLAIRKFKNGSLCKHPFCLDCIAKYIEVKVEETTGC-IECPGLNCKQLLDPLSCNCIIS----------KPIFEKWCDHLCDSTVLGSESCYCPYQDCSVLVLNECRDKLTKIKCPNCKKSFCFLCKIPWHAGYQCNESRHLRDRNDILVGELIEEKKWTRCYNCGHSVERVSG-CRDMKCKCGVRFCHQCGGPF-HFGPCSHRRCGAVLCNLFIF 238          
BLAST of Gcaud2599.t1 vs. uniprot
Match: UPI000772A9BB (probable E3 ubiquitin-protein ligase RNF217 isoform X1 n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI000772A9BB)

HSP 1 Score: 89.7 bits (221), Expect = 1.480e-16
Identity = 63/222 (28.38%), Postives = 97/222 (43.69%), Query Frame = 0
Query:  100 CQICFDEFLPQLAFASKD-CKHHFCYPCFVQYLRLVIERGHPYPITCP--SCRTVWDNQTCLTALSGTGDDYHALERLIINKDYTKKIR-YCANSKCATPFDWIVDDAGGQNIAQIARVLCPFCDTETCAICRCVWHEDETCEEYAIRQDLESLSV--LTRAKKWMRCPDCGHLIEKRAGDCAFVRCTCGCGFCHYCGMAYMSLEPTSENVHGMPGCRCALF 315
            C+IC +  L    F +   C H FC  C  +Y+ + +E G    I CP  SC+   D  +C + +S    D      L+ +   +   R YC    C+     ++++   +    + ++ CP C    C +C+  WH    C E    +D   + +  L   KKW RC +CGH +E+ +G C  V+C CG  FCH CG  +  L P      G   C    F
Sbjct:   29 CEICIEPMLSNKKFENASLCTHPFCLDCISKYVEVKVE-GFIGNIKCPGTSCKHPLDPLSCRSIISKPVFDKWC--DLLCDSVVSGVERCYCPYRDCSAL---VLNECKDK----LKKIKCPNCKKNLCYVCKIPWHAGYQCNESGQLRDRNDVLIGELIEEKKWTRCYNCGHSVERVSG-CRDVKCKCGVRFCHQCGGRF-HLGPCKHKCCGDAFCMLLFF 238          
BLAST of Gcaud2599.t1 vs. uniprot
Match: A0A5N5KI13_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5KI13_9ROSI)

HSP 1 Score: 89.4 bits (220), Expect = 4.670e-16
Identity = 59/214 (27.57%), Postives = 93/214 (43.46%), Query Frame = 0
Query:   86 EPDQCASQDERTVECQICFDEFLPQLAFASKD-CKHHFCYPCFVQYLRLVIERGHPYPITCP--SCRTVWDNQTCLTALSGTGDDY---HALERLIINKDYTKKIRYCANSKCATPFDWIVDDAGGQNIAQIARVLCPFCDTETCAICRCVWHEDETCEEYAIRQDLESLSV--LTRAKKWMRCPDCGHLIEKRAGDCAFVRCTCGCGFCHYCG 291
            EP     +++    C+IC +  L    F +   C+H FC  C  +Y+ + +E      I CP  +CR   D  +C   +S    +    H  +  ++  +      YC    C+     +V +    N+ +I    CP C    C +C+  WH    C E    +D   +    L   KKW RC +CGH +E+ +G C  ++C CG  FCH CG
Sbjct:   15 EPGLLQQEEDSNFTCEICTEPMLAISKFKNGSLCQHPFCLDCVAKYIEVTVEETTGC-IECPGLNCRQPLDPISCRRIISKPIFEKWCDHLCDSTVLGSESC----YCPYRDCSA----LVLNECRDNLKKIK---CPNCKKNFCFLCKIPWHAGYRCNESRHLRDRNDILAGELIEEKKWTRCYNCGHSVERVSG-CRDIKCKCGVQFCHQCG 215          
BLAST of Gcaud2599.t1 vs. uniprot
Match: B9SWE7_RICCO (Zinc finger protein, putative n=1 Tax=Ricinus communis TaxID=3988 RepID=B9SWE7_RICCO)

HSP 1 Score: 88.2 bits (217), Expect = 4.700e-16
Identity = 58/198 (29.29%), Postives = 91/198 (45.96%), Query Frame = 0
Query:  100 CQICFDEFLPQLAFASKD-CKHHFCYPCFVQYLRLVIERGHPYPITCP--SCRTVWDNQTCLTALSGTGDDYHALERLIINKDYTKKIR-YCANSKCATPFDWIVDDAGGQNIAQIARVLCPFCDTETCAICRCVWHEDETCEEYAIRQDLESLSV--LTRAKKWMRCPDCGHLIEKRAGDCAFVRCTCGCGFCHYCG 291
            C+IC +  L    F +   C H FC  C  +Y+ + +E G    I CP  SC+   D  +C + +S    D      L+ +   +   R YC    C+     ++++   +    + ++ CP C    C +C+  WH    C E    +D   + +  L   KKW RC +CGH +E+ +G C  V+C CG  FCH CG
Sbjct:   29 CEICIEPMLSNKKFENASLCTHPFCLDCISKYVEVKVE-GFIGNIKCPGTSCKHPLDPLSCRSIISKPVFDKWC--DLLCDSVVSGVERCYCPYRDCSAL---VLNECKDK----LKKIKCPNCKKNLCYVCKIPWHAGYQCNESGQLRDRNDVLIGELIEEKKWTRCYNCGHSVERVSG-CRDVKCKCGVRFCHQCG 215          
BLAST of Gcaud2599.t1 vs. uniprot
Match: A0A834LAS7_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LAS7_RHOSS)

HSP 1 Score: 85.5 bits (210), Expect = 3.370e-15
Identity = 54/179 (30.17%), Postives = 77/179 (43.02%), Query Frame = 0
Query:  100 CQICFDEFLPQLAFASKD-CKHHFCYPCFVQYLRLVIERGHPYPITCP--SCRTVWDNQTCLTALSGTGDDYHA---LERLIINKDYTKKIRYCANSKCATPFDWIVDDAGGQNIAQIARVLCPFCDTETCAICRCVWHEDETCEEYAIRQDLESLS--VLTRAKKWMRCPDCGHLIEK 270
            C+IC +  L    F +   C H FC  C  +YL+L I+      I CP  +C  + D   C T +     D       E+ ++  D       C N +C+     +V++ GG     + R +CP C    C  C   WH    CEE    +D   +   VL   KKWMRCP C H +E+
Sbjct:   34 CEICIEPMLSNYKFHNNSLCVHPFCVDCITEYLQLKIKDDRVAGIKCPGLNCDQLLDPLCCRTLIPPEAFDKWCDLLCEKALLGVDRC----CCPNWRCSAV---VVNECGGM----VKRSMCPNCKRLFCFSCELPWHAGSRCEESGQLRDENDVEFGVLAERKKWMRCPQCHHCVER 201          
BLAST of Gcaud2599.t1 vs. uniprot
Match: A0A6A4KWF6_9ERIC (Uncharacterized protein (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4KWF6_9ERIC)

HSP 1 Score: 83.2 bits (204), Expect = 1.220e-14
Identity = 58/188 (30.85%), Postives = 86/188 (45.74%), Query Frame = 0
Query:  100 CQICFDEFLP-QLAFASKD-CKHHFCYPCFVQYLRLVIERGHPYPITCP--SCRTVWDNQTCLTALS-GTGDDYHAL--ERLIINKDYTKKIRYCANSKCATPFDWIVDDAGGQNIAQIARVLCPFCDTETCAICRCVWHEDETCEEYAIRQDLESLSVLTRAKKWMRCPDCGHLIEKRAGDCAFVRC 280
            C+IC +     +  F + + C H FC  C  +Y+R  IE      I CP  +C  + D   C   +  G  D +  L  ER ++  D      YC N  C+     +V++ GG     + + +CP C    C  CR  WH    CEE     D+     + R KKWMRCP+C H +E+  G C+ ++C
Sbjct:   13 CEICIEPMSSNKKKFQNNNLCVHPFCKECIAKYVRFKIEDERVAGIKCPGSNCDKLLDPLCCRALIPPGAFDRWCDLLCERALLGLDRC----YCPNRDCSAV---VVNECGGI----VKKSMCPNCKEWFCFKCRVTWHAGYLCEELRDWSDVAFADFVAR-KKWMRCPNCRHCVERVHG-CSIIKC 187          
BLAST of Gcaud2599.t1 vs. uniprot
Match: A0A2C9W0N2_MANES (Uncharacterized protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9W0N2_MANES)

HSP 1 Score: 80.5 bits (197), Expect = 2.260e-13
Identity = 55/206 (26.70%), Postives = 93/206 (45.15%), Query Frame = 0
Query:   93 QDERTVECQICFDEFLPQLAFASKD-CKHHFCYPCFVQYLRLVIER--GHPYPITCP--SCRTVWDNQTCLTALSGTGDDYHALERLIINKDYTKKIRYCANSKCATPFDWIVDDAGGQNIAQIARVLCPFCDTETCAICRCVWHEDETCEEYAIRQDLESLSV--LTRAKKWMRCPDCGHLIEKRAGDCAFVRCTCGCGFCHYCG 291
            +++    C+IC +       F +   C H FC  C  +Y+ + +E   G+   I CP  +C+   D  +C + +S    D    E L  +   + +  YC    C+     ++++   +    + ++ CP C    C  C+  WH    C E    +D   + +  L   KKW RC +CGH +E+ +G C  ++C CG  FCH CG
Sbjct:   21 EEDSNFTCEICIEPTESNRKFKNGGLCCHPFCLDCISKYINVKVEAITGN---IECPGLNCKHALDPLSCRSIVSKQLFDKWC-ELLCDSVVLSFERCYCPYRDCSAL---VLNECKDK----LKKIKCPNCKKNFCFRCKLPWHAGYQCNESGQLRDSNDILIGELIEEKKWTRCYNCGHSVERVSG-CRDIKCKCGVRFCHQCG 214          
BLAST of Gcaud2599.t1 vs. uniprot
Match: UPI00057AD1A5 (probable E3 ubiquitin-protein ligase RNF217 isoform X1 n=1 Tax=Populus euphratica TaxID=75702 RepID=UPI00057AD1A5)

HSP 1 Score: 80.9 bits (198), Expect = 2.320e-13
Identity = 51/195 (26.15%), Postives = 83/195 (42.56%), Query Frame = 0
Query:   86 EPDQCASQDERTVECQICFDEFLPQLAFASKD-CKHHFCYPCFVQYLRLVIERGHPYPITCP--SCRTVWDNQTCLTALSGTGDDYHALERLIINK--DYTKKIRYCANSKCATPFDWIVDDAGGQNIAQIARVLCPFCDTETCAICRCVWHEDETCEEYAIRQDLESLSV--LTRAKKWMRCPDCGHLIEKRAG 273
            EP Q   +++    C+IC +  L    F +   CKH FC  C  +Y+ + +E    Y I CP  +C+ + D  +C   +S          + I  K  D+        +  C  P+         +   ++ ++ CP C    C +C+  WH    C E    +D   + V  L   KKW RC +CGH +E+ +G
Sbjct:   15 EPGQIQQEEDSNFTCEICIEPMLAIRKFKNGSLCKHPFCLDCVAKYIEVKVEETTGY-IECPGLNCKQLLDPLSCNCIIS----------KPIFEKWCDHLCDSTVLGSESCYCPYQDCSVLVLNECRDKLKKIKCPNCKKSFCFLCKIPWHAGYQCNESRHLRDRNDILVGELIEEKKWTRCYNCGHSVERVSG 198          
BLAST of Gcaud2599.t1 vs. uniprot
Match: A0A2K2A133_POPTR (Uncharacterized protein n=2 Tax=Populus trichocarpa TaxID=3694 RepID=A0A2K2A133_POPTR)

HSP 1 Score: 78.2 bits (191), Expect = 1.760e-12
Identity = 50/195 (25.64%), Postives = 82/195 (42.05%), Query Frame = 0
Query:   86 EPDQCASQDERTVECQICFDEFLPQLAFASKD-CKHHFCYPCFVQYLRLVIERGHPYPITCP--SCRTVWDNQTCLTALSGTGDDYHALERLIINK--DYTKKIRYCANSKCATPFDWIVDDAGGQNIAQIARVLCPFCDTETCAICRCVWHEDETCEEYAIRQDLESLSV--LTRAKKWMRCPDCGHLIEKRAG 273
            EP Q   +++    C+IC +  L    F +   CKH FC  C  +Y+ + +E      I CP  +C+ + D  +C   +S          + I  K  D+        +  C  P+         +   ++ ++ CP C    C +C+  WH    C E    +D   + V  L   KKW RC +CGH +E+ +G
Sbjct:   15 EPGQLQQEEDSNFTCEICIEPMLAIRKFKNGSLCKHPFCLDCIAKYIEVKVEETTGC-IECPGLNCKQLLDPLSCNCIIS----------KPIFEKWCDHLCDSTVLGSESCYCPYQDCSVLVLNECRDKLTKIKCPNCKKSFCFLCKIPWHAGYQCNESRHLRDRNDILVGELIEEKKWTRCYNCGHSVERVSG 198          
The following BLAST results are available for this feature:
BLAST of Gcaud2599.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IWI4_9FLOR3.810e-17151.06ATP-dependent RNA helicase DEAH11, chloroplastic n... [more]
A0A2K2A129_POPTR4.050e-1927.00Uncharacterized protein n=4 Tax=Saliceae TaxID=238... [more]
UPI000772A9BB1.480e-1628.38probable E3 ubiquitin-protein ligase RNF217 isofor... [more]
A0A5N5KI13_9ROSI4.670e-1627.57Uncharacterized protein n=1 Tax=Salix brachista Ta... [more]
B9SWE7_RICCO4.700e-1629.29Zinc finger protein, putative n=1 Tax=Ricinus comm... [more]
A0A834LAS7_RHOSS3.370e-1530.17Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]
A0A6A4KWF6_9ERIC1.220e-1430.85Uncharacterized protein (Fragment) n=1 Tax=Rhodode... [more]
A0A2C9W0N2_MANES2.260e-1326.70Uncharacterized protein n=1 Tax=Manihot esculenta ... [more]
UPI00057AD1A52.320e-1326.15probable E3 ubiquitin-protein ligase RNF217 isofor... [more]
A0A2K2A133_POPTR1.760e-1225.64Uncharacterized protein n=2 Tax=Populus trichocarp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002867IBR domainSMARTSM00647ibrneu5coord: 241..310
e-value: 0.2
score: 9.6
coord: 169..237
e-value: 0.072
score: 14.5
IPR002867IBR domainPFAMPF01485IBRcoord: 181..237
e-value: 5.1E-7
score: 29.7
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 100..148
e-value: 0.0038
score: 26.4
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 99..149
e-value: 2.9E-6
score: 27.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 100..149
score: 11.574592
NoneNo IPR availableGENE3D1.20.120.1750coord: 235..372
e-value: 1.2E-10
score: 43.7
NoneNo IPR availablePANTHERPTHR11685:SF371RBR-TYPE E3 UBIQUITIN TRANSFERASEcoord: 61..373
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 179..241
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 94..163
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 245..296
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 94..194
e-value: 4.7E-11
score: 44.4
IPR031127E3 ubiquitin ligase RBR familyPANTHERPTHR11685RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAININGcoord: 61..373
IPR044066TRIAD supradomainPROSITEPS51873TRIADcoord: 96..316
score: 19.011019

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_53_length_63756_cov_4.464180contigNODE_53_length_63756_cov_4.464180:41367..42794 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2599.t1Gcaud2599.t1Gracilaria caudata M_176_S67 malemRNANODE_53_length_63756_cov_4.464180 41367..42794 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2599.t1 ID=Gcaud2599.t1|Name=Gcaud2599.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=476bp
MAAPETDYLLALRMQLRENGAGDFDVADMLGLDTHAHTSYETLRSQAVAQ
SLEASNQLVASDSKFARNLAASQHGLDLDKCIAQLEPDQCASQDERTVEC
QICFDEFLPQLAFASKDCKHHFCYPCFVQYLRLVIERGHPYPITCPSCRT
VWDNQTCLTALSGTGDDYHALERLIINKDYTKKIRYCANSKCATPFDWIV
DDAGGQNIAQIARVLCPFCDTETCAICRCVWHEDETCEEYAIRQDLESLS
VLTRAKKWMRCPDCGHLIEKRAGDCAFVRCTCGCGFCHYCGMAYMSLEPT
SENVHGMPGCRCALFPPADVEQPAPPRQAQAPEQAQALQQAQAAWQAQAA
WQAQAAQQAQAAQQAQQPVPVVPMVPLYPGVIGPNGHVNVEKCLGEEGPR
EMGGPLPGAMLDCLANAVCPYEECGLKFQSVRSLEQHLAFVQRHEVYLCC
ERPFYQYASLRNHQVNNHGVLHGVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002867IBR_dom
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR031127E3_UB_ligase_RBR
IPR044066TRIAD_supradom