Gcaud2599.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2599.t1
Unique Name	Gcaud2599.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	476

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_53_length_63756_cov_4.464180	contig	NODE_53_length_63756_cov_4.464180:41367..42794 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	112098.XP_008605511.1
PFAMs	IBR
Max annot lvl	2759\|Eukaryota
Evalue	9.11e-24
EggNOG OGs	KOG1812@1\|root,KOG1812@2759\|Eukaryota
Description	protein polyubiquitination
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2599	Gcaud2599	Gracilaria caudata M_176_S67 male	gene	NODE_53_length_63756_cov_4.464180 41367..42794 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2599.t1.start1	Gcaud2599.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_53_length_63756_cov_4.464180 41367..41369 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2599.t1.CDS1	Gcaud2599.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_53_length_63756_cov_4.464180 41367..42794 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2599.t1.exon1	Gcaud2599.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_53_length_63756_cov_4.464180 41367..42794 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2599.t1.stop1	Gcaud2599.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_53_length_63756_cov_4.464180 42792..42794 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2599.t1	Gcaud2599.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_53_length_63756_cov_4.464180 41367..42794 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_53_length_63756_cov_4.464180:41367..42794+
coding sequence from alignment at NODE_53_length_63756_cov_4.464180:41367..42794+

mRNA sequence

>Gcaud2599.t1 ID=Gcaud2599.t1|Name=Gcaud2599.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=476bp
MAAPETDYLLALRMQLRENGAGDFDVADMLGLDTHAHTSYETLRSQAVAQ
SLEASNQLVASDSKFARNLAASQHGLDLDKCIAQLEPDQCASQDERTVEC
QICFDEFLPQLAFASKDCKHHFCYPCFVQYLRLVIERGHPYPITCPSCRT
VWDNQTCLTALSGTGDDYHALERLIINKDYTKKIRYCANSKCATPFDWIV
DDAGGQNIAQIARVLCPFCDTETCAICRCVWHEDETCEEYAIRQDLESLS
VLTRAKKWMRCPDCGHLIEKRAGDCAFVRCTCGCGFCHYCGMAYMSLEPT
SENVHGMPGCRCALFPPADVEQPAPPRQAQAPEQAQALQQAQAAWQAQAA
WQAQAAQQAQAAQQAQQPVPVVPMVPLYPGVIGPNGHVNVEKCLGEEGPR
EMGGPLPGAMLDCLANAVCPYEECGLKFQSVRSLEQHLAFVQRHEVYLCC
ERPFYQYASLRNHQVNNHGVLHGVV*

spliced messenger RNA

>Gcaud2599.t1 ID=Gcaud2599.t1|Name=Gcaud2599.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:41367..42794+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGCCGGAAACCGACTATCTGTTAGCTCTTCGTATGCAACTACG
TGAGAACGGCGCGGGCGACTTCGATGTCGCCGATATGCTCGGTCTCGACA
CTCACGCCCACACCTCGTACGAGACGCTTCGTAGTCAAGCCGTCGCCCAA
TCCCTCGAAGCCTCCAATCAACTCGTCGCCAGTGACTCCAAGTTCGCGCG
TAATCTAGCAGCTAGCCAACACGGGTTGGACCTAGACAAGTGCATTGCGC
AGCTTGAGCCGGACCAATGTGCGTCGCAGGACGAACGTACCGTAGAGTGT
CAGATATGCTTCGATGAATTCCTACCACAGTTGGCGTTTGCTTCCAAAGA
TTGCAAACATCACTTTTGTTACCCTTGTTTTGTGCAATACTTACGACTTG
TGATTGAGAGAGGACATCCATACCCAATCACCTGCCCCAGTTGCAGAACC
GTCTGGGATAACCAAACATGTCTCACGGCTCTTTCCGGTACTGGAGATGA
TTACCATGCGTTGGAACGACTCATCATTAACAAAGACTATACTAAGAAGA
TTCGATACTGCGCCAATTCAAAGTGTGCTACGCCCTTCGACTGGATTGTT
GACGATGCAGGAGGGCAGAACATCGCCCAAATTGCCAGAGTTCTTTGTCC
GTTTTGTGACACTGAAACCTGTGCTATATGCCGTTGTGTCTGGCATGAGG
ATGAAACATGTGAAGAATACGCTATCAGACAAGACTTAGAATCCCTCTCT
GTCTTAACTCGTGCAAAAAAGTGGATGAGGTGCCCTGACTGTGGCCATCT
TATTGAAAAGCGTGCTGGAGATTGTGCGTTTGTGCGTTGTACTTGTGGCT
GTGGGTTTTGTCATTATTGCGGCATGGCGTATATGTCTCTGGAGCCCACC
TCTGAGAACGTACATGGAATGCCTGGTTGTCGCTGTGCTTTGTTCCCGCC
CGCCGATGTTGAACAACCCGCACCACCGCGGCAAGCTCAGGCACCGGAGC
AAGCTCAAGCGCTGCAGCAAGCTCAGGCGGCGTGGCAAGCTCAGGCAGCG
TGGCAAGCTCAGGCAGCGCAACAAGCTCAAGCAGCACAGCAAGCTCAGCA
ACCAGTTCCTGTGGTTCCAATGGTACCACTTTATCCAGGCGTCATAGGTC
CAAACGGTCATGTGAACGTAGAGAAATGTTTAGGGGAAGAAGGTCCACGT
GAAATGGGTGGCCCACTGCCTGGTGCAATGTTGGATTGTTTGGCAAATGC
TGTGTGCCCGTATGAGGAATGCGGACTTAAATTCCAAAGTGTTCGCTCTT
TAGAGCAACACTTGGCATTTGTGCAAAGGCATGAAGTCTACTTGTGCTGC
GAACGCCCATTTTATCAATACGCGTCTCTTCGTAATCATCAAGTGAATAA
TCACGGCGTTCTTCATGGCGTGGTTTAG

protein sequence of Gcaud2599.t1

>Gcaud2599.t1 ID=Gcaud2599.t1|Name=Gcaud2599.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=476bp
MAAPETDYLLALRMQLRENGAGDFDVADMLGLDTHAHTSYETLRSQAVAQ
SLEASNQLVASDSKFARNLAASQHGLDLDKCIAQLEPDQCASQDERTVEC
QICFDEFLPQLAFASKDCKHHFCYPCFVQYLRLVIERGHPYPITCPSCRT
VWDNQTCLTALSGTGDDYHALERLIINKDYTKKIRYCANSKCATPFDWIV
DDAGGQNIAQIARVLCPFCDTETCAICRCVWHEDETCEEYAIRQDLESLS
VLTRAKKWMRCPDCGHLIEKRAGDCAFVRCTCGCGFCHYCGMAYMSLEPT
SENVHGMPGCRCALFPPADVEQPAPPRQAQAPEQAQALQQAQAAWQAQAA
WQAQAAQQAQAAQQAQQPVPVVPMVPLYPGVIGPNGHVNVEKCLGEEGPR
EMGGPLPGAMLDCLANAVCPYEECGLKFQSVRSLEQHLAFVQRHEVYLCC
ERPFYQYASLRNHQVNNHGVLHGVV*

mRNA from alignment at NODE_53_length_63756_cov_4.464180:41367..42794+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2599.t1 ID=Gcaud2599.t1|Name=Gcaud2599.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:41367..42794+ (Gracilaria caudata M_176_S67 male)
ATGGCGGCGCCGGAAACCGACTATCTGTTAGCTCTTCGTATGCAACTACG
TGAGAACGGCGCGGGCGACTTCGATGTCGCCGATATGCTCGGTCTCGACA
CTCACGCCCACACCTCGTACGAGACGCTTCGTAGTCAAGCCGTCGCCCAA
TCCCTCGAAGCCTCCAATCAACTCGTCGCCAGTGACTCCAAGTTCGCGCG
TAATCTAGCAGCTAGCCAACACGGGTTGGACCTAGACAAGTGCATTGCGC
AGCTTGAGCCGGACCAATGTGCGTCGCAGGACGAACGTACCGTAGAGTGT
CAGATATGCTTCGATGAATTCCTACCACAGTTGGCGTTTGCTTCCAAAGA
TTGCAAACATCACTTTTGTTACCCTTGTTTTGTGCAATACTTACGACTTG
TGATTGAGAGAGGACATCCATACCCAATCACCTGCCCCAGTTGCAGAACC
GTCTGGGATAACCAAACATGTCTCACGGCTCTTTCCGGTACTGGAGATGA
TTACCATGCGTTGGAACGACTCATCATTAACAAAGACTATACTAAGAAGA
TTCGATACTGCGCCAATTCAAAGTGTGCTACGCCCTTCGACTGGATTGTT
GACGATGCAGGAGGGCAGAACATCGCCCAAATTGCCAGAGTTCTTTGTCC
GTTTTGTGACACTGAAACCTGTGCTATATGCCGTTGTGTCTGGCATGAGG
ATGAAACATGTGAAGAATACGCTATCAGACAAGACTTAGAATCCCTCTCT
GTCTTAACTCGTGCAAAAAAGTGGATGAGGTGCCCTGACTGTGGCCATCT
TATTGAAAAGCGTGCTGGAGATTGTGCGTTTGTGCGTTGTACTTGTGGCT
GTGGGTTTTGTCATTATTGCGGCATGGCGTATATGTCTCTGGAGCCCACC
TCTGAGAACGTACATGGAATGCCTGGTTGTCGCTGTGCTTTGTTCCCGCC
CGCCGATGTTGAACAACCCGCACCACCGCGGCAAGCTCAGGCACCGGAGC
AAGCTCAAGCGCTGCAGCAAGCTCAGGCGGCGTGGCAAGCTCAGGCAGCG
TGGCAAGCTCAGGCAGCGCAACAAGCTCAAGCAGCACAGCAAGCTCAGCA
ACCAGTTCCTGTGGTTCCAATGGTACCACTTTATCCAGGCGTCATAGGTC
CAAACGGTCATGTGAACGTAGAGAAATGTTTAGGGGAAGAAGGTCCACGT
GAAATGGGTGGCCCACTGCCTGGTGCAATGTTGGATTGTTTGGCAAATGC
TGTGTGCCCGTATGAGGAATGCGGACTTAAATTCCAAAGTGTTCGCTCTT
TAGAGCAACACTTGGCATTTGTGCAAAGGCATGAAGTCTACTTGTGCTGC
GAACGCCCATTTTATCAATACGCGTCTCTTCGTAATCATCAAGTGAATAA
TCACGGCGTTCTTCATGGCGTGGTTTAG

Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:41367..42794+

>Gcaud2599.t1 ID=Gcaud2599.t1|Name=Gcaud2599.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1428bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:41367..42794+ (Gracilaria caudata M_176_S67 male)
ATGGCGGCGCCGGAAACCGACTATCTGTTAGCTCTTCGTATGCAACTACG
TGAGAACGGCGCGGGCGACTTCGATGTCGCCGATATGCTCGGTCTCGACA
CTCACGCCCACACCTCGTACGAGACGCTTCGTAGTCAAGCCGTCGCCCAA
TCCCTCGAAGCCTCCAATCAACTCGTCGCCAGTGACTCCAAGTTCGCGCG
TAATCTAGCAGCTAGCCAACACGGGTTGGACCTAGACAAGTGCATTGCGC
AGCTTGAGCCGGACCAATGTGCGTCGCAGGACGAACGTACCGTAGAGTGT
CAGATATGCTTCGATGAATTCCTACCACAGTTGGCGTTTGCTTCCAAAGA
TTGCAAACATCACTTTTGTTACCCTTGTTTTGTGCAATACTTACGACTTG
TGATTGAGAGAGGACATCCATACCCAATCACCTGCCCCAGTTGCAGAACC
GTCTGGGATAACCAAACATGTCTCACGGCTCTTTCCGGTACTGGAGATGA
TTACCATGCGTTGGAACGACTCATCATTAACAAAGACTATACTAAGAAGA
TTCGATACTGCGCCAATTCAAAGTGTGCTACGCCCTTCGACTGGATTGTT
GACGATGCAGGAGGGCAGAACATCGCCCAAATTGCCAGAGTTCTTTGTCC
GTTTTGTGACACTGAAACCTGTGCTATATGCCGTTGTGTCTGGCATGAGG
ATGAAACATGTGAAGAATACGCTATCAGACAAGACTTAGAATCCCTCTCT
GTCTTAACTCGTGCAAAAAAGTGGATGAGGTGCCCTGACTGTGGCCATCT
TATTGAAAAGCGTGCTGGAGATTGTGCGTTTGTGCGTTGTACTTGTGGCT
GTGGGTTTTGTCATTATTGCGGCATGGCGTATATGTCTCTGGAGCCCACC
TCTGAGAACGTACATGGAATGCCTGGTTGTCGCTGTGCTTTGTTCCCGCC
CGCCGATGTTGAACAACCCGCACCACCGCGGCAAGCTCAGGCACCGGAGC
AAGCTCAAGCGCTGCAGCAAGCTCAGGCGGCGTGGCAAGCTCAGGCAGCG
TGGCAAGCTCAGGCAGCGCAACAAGCTCAAGCAGCACAGCAAGCTCAGCA
ACCAGTTCCTGTGGTTCCAATGGTACCACTTTATCCAGGCGTCATAGGTC
CAAACGGTCATGTGAACGTAGAGAAATGTTTAGGGGAAGAAGGTCCACGT
GAAATGGGTGGCCCACTGCCTGGTGCAATGTTGGATTGTTTGGCAAATGC
TGTGTGCCCGTATGAGGAATGCGGACTTAAATTCCAAAGTGTTCGCTCTT
TAGAGCAACACTTGGCATTTGTGCAAAGGCATGAAGTCTACTTGTGCTGC
GAACGCCCATTTTATCAATACGCGTCTCTTCGTAATCATCAAGTGAATAA
TCACGGCGTTCTTCATGGCGTGGTTTAG