Gcaud2535.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2535.t1
Unique NameGcaud2535.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length344
Homology
BLAST of Gcaud2535.t1 vs. uniprot
Match: A0A2V3IFX8_9FLOR (General transcriptional corepressor tupA n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFX8_9FLOR)

HSP 1 Score: 163 bits (412), Expect = 3.940e-41
Identity = 84/180 (46.67%), Postives = 114/180 (63.33%), Query Frame = 0
Query:  152 SHRTCPDEDWGFTFEKFPLDSKPEFNLNLQQTLPHESVVSCVRYSWNGEQLATGSRRCTNVFDANSGQHLFAFADEDSPRPMRNHGPQSSSNAEDNNNGGEYVRSVCFSPDGKLLVTGSDDHVLHVWDMQSRRLNHR-IEETANVFSVDISSTSKFIVSASGEEFAKLWNLKTGTLLSTL 330
            S +    +DW  T  +    SK    LNLQ TLPH SVV CVRYSW+G  LATGS R  +++DA +G  +  F+ + S  P     P S            YVR+VCFSPDG  L+TG++DHV+ VWD++SR + HR I  + +++SVD S+ S+FI+S SG++ AKLWNL+TG L+STL
Sbjct:  454 SQQPSQPDDWTVTQGRTANGSKVNMKLNLQYTLPHGSVVCCVRYSWDGMFLATGSNRSADIYDAQTGHKVATFSKDMSAEPTEMQTPDS------------YVRAVCFSPDGNWLITGAEDHVVKVWDVRSRTVKHRLIGHSTDIYSVDASANSQFIISGSGDKRAKLWNLETGALMSTL 621          
BLAST of Gcaud2535.t1 vs. uniprot
Match: A0A1X6PBN5_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PBN5_PORUM)

HSP 1 Score: 134 bits (337), Expect = 5.300e-32
Identity = 70/159 (44.03%), Postives = 102/159 (64.15%), Query Frame = 0
Query:  178 LNLQQTLPHESVVSCVRYSWNGEQLATGSRRCTNVFDANSGQHLFAFADEDS-----PRPMRNHGPQSSSNAEDNNNGGEYVRSVCFSPDGKLLVTGSDDHVLHVWDMQSRRLNHR-IEETANVFSVDISSTSKFIVSASGEEFAKLWNLKTGTLLSTL 330
            + L  +  H+SVV CVRYS++G+ LATGS RC ++F+A SGQ + AF  ED                  S A+       YVR+VCF+PDG+ LVTG++DHV+ VWD+++R + H  +    +++SVD S+  +FI S SG++ AKLW+L+TG LL+TL
Sbjct:  137 VTLHNSFVHDSVVCCVRYSFDGQYLATGSNRCAHIFEAASGQRVAAFDREDGVGXXXXXXXXXXXGTGGSGAD------SYVRAVCFTPDGESLVTGAEDHVVKVWDVRNRTVRHSFVGHETDIYSVDASTDGRFIASGSGDKTAKLWSLQTGLLLTTL 289          
BLAST of Gcaud2535.t1 vs. uniprot
Match: A0A7S0XJM1_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XJM1_9RHOD)

HSP 1 Score: 126 bits (317), Expect = 3.970e-29
Identity = 68/149 (45.64%), Postives = 89/149 (59.73%), Query Frame = 0
Query:  177 NLNLQQTLPHESVVSCVRYSWNGEQLATGSRRCTNVFDANSGQHLFAFADEDSPRPMRNHGPQSSSNAEDNNNGGEYVRSVCFSPDGKLLVTGSDDHVLHVWDMQSRRLNHR-IEETANVFSVDISSTSKFIVSASGEEFAKLWNLKTG 324
            N+ LQ T  HESVV CVRYSWNG+ LATGS R   VFDA+SG  L  F+ E            S  N  D+ +   YVR+VCFSPDGK L+TG++DHV+ VWD++SR + HR +    +++SVD S            + A LW L++G
Sbjct:  335 NIKLQNTFQHESVVCCVRYSWNGQYLATGSNRYAQVFDASSGNKLAEFSGE------------SGGNGGDSQD--SYVRAVCFSPDGKWLITGAEDHVVKVWDVRSRTMKHRLVGHETDIYSVDASXXXXXXXXXXXXKRAILWGLQSG 469          
BLAST of Gcaud2535.t1 vs. uniprot
Match: A0A7S0ZG95_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZG95_9RHOD)

HSP 1 Score: 128 bits (321), Expect = 4.250e-29
Identity = 68/155 (43.87%), Postives = 94/155 (60.65%), Query Frame = 0
Query:  177 NLNLQQTLPHESVVSCVRYSWNGEQLATGSRRCTNVFDANSGQHLFAFADEDSPRPMRNHGPQSSSNAEDNNNGGEYVRSVCFSPDGKLLVTGSDDHVLHVWDMQSRRLNHR-IEETANVFSVDISSTSKFIVSASGEEFAKLWNLKTGTLLSTL 330
            N+ LQ +  HESVV CVRYSWNG+ LATGS R   VFDAN+G+ +  +A +D P           S  +D+     YVR+VCFSPDGK L+TG++DH++ VWD+++R + HR I    +++SVD S              A LW+L++G  L TL
Sbjct:  347 NIKLQNSYQHESVVCCVRYSWNGQYLATGSNRYAQVFDANTGKKIATYARDDEP----------GSETQDS-----YVRAVCFSPDGKWLITGAEDHMVKVWDVRNRTVKHRLIGHETDIYSVDASXXXXXXXXXXXXXNAILWSLQSGKKLMTL 486          
BLAST of Gcaud2535.t1 vs. uniprot
Match: R7QRF1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRF1_CHOCR)

HSP 1 Score: 126 bits (316), Expect = 2.550e-28
Identity = 79/199 (39.70%), Postives = 105/199 (52.76%), Query Frame = 0
Query:  133 SSQGRAVMEQSGTREPSDASHRTCPDEDWGFTFEKFPLDSKPEFNLNLQQTLPHESVVSCVRYSWNGEQLATGSRRCTNVFDANSGQHLFAFADEDSPRPMRNHGPQSSSNAEDNNNGGEYVRSVCFSPDGKLLVTGSDDHVLHVWDMQSRRLNHRIE-ETANVFSVDISSTSKFIVSASGEEFAKLWNLKTGTLLSTL 330
            S+ GRA M ++    P     R   D DW    E     +     + LQ TL   SVV CVRYSW+G  LATGS R  +VF+AN+G  + +FA E  P P R          ED N+   YVR+VCFSPDG  L+TG++DHV+ VWD++SR++ HR+E    +++SVD S                    +TG LL TL
Sbjct:  434 SAGGRAEMLRTTVGMPLSGP-RPLTDPDWTVYHEPSATRAVVNTEIRLQNTLELNSVVCCVRYSWDGAYLATGSNRVAHVFNANTGAIIASFAKE--PAPER----------EDGNSPDSYVRAVCFSPDGNWLITGAEDHVVKVWDVRSRQVKHRLEGHGTDIYSVDASXXXXXXXXXXXXXXXXXXXXETGKLLRTL 619          
BLAST of Gcaud2535.t1 vs. uniprot
Match: A0A2V3J4E9_9FLOR (General transcriptional corepressor tupA n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4E9_9FLOR)

HSP 1 Score: 120 bits (301), Expect = 1.760e-26
Identity = 73/197 (37.06%), Postives = 104/197 (52.79%), Query Frame = 0
Query:  139 VMEQSGTREPSDASHRTCPDEDW----GFTFEKFPLDSKPEFNLNLQQTLPHESVVSCVRYSWNGEQLATGSRRCTNVFDANSGQHLFAFADEDSPRPMRNHGPQSSSNAEDNNNGGEYVRSVCFSPDGKLLVTGSDDHVLHVWDMQSRRLNHR-IEETANVFSVDISSTSKFIVSASGEEFAKLWNLKTGTLLSTL 330
            +   S    PS A H      DW    G T    P++ K    ++LQ T+P +SVV CVRYSW+G+ LATGS    ++FDAN+G  +  F+ +D+  P  +HG               YVR+VCFSPDG  L+TG++D ++ VWD++SR++ HR I    +++SVD S+                    TG LLSTL
Sbjct:  278 ISPPSANPPPSQAEH------DWYVFQGHTHTGAPVNMK----VSLQHTIPLDSVVCCVRYSWDGQFLATGSNHAAHIFDANTGNRVATFS-KDNGAPEEHHGTD------------RYVRAVCFSPDGNWLITGAEDRMVRVWDVRSRKVKHRLIGHGTDIYSVDASAXXXXXXXXXXXXXXXXXXXXTGKLLSTL 451          
BLAST of Gcaud2535.t1 vs. uniprot
Match: A0A7S1XH44_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XH44_9RHOD)

HSP 1 Score: 119 bits (298), Expect = 4.480e-26
Identity = 59/124 (47.58%), Postives = 79/124 (63.71%), Query Frame = 0
Query:  177 NLNLQQTLPHESVVSCVRYSWNGEQLATGSRRCTNVFDANSGQHLFAFADEDSPRPMRNHGPQSSSNAEDNNNGGEYVRSVCFSPDGKLLVTGSDDHVLHVWDMQSRRLNHRIE-ETANVFSVD 299
            N+ LQ T  H SVV CVRYSWNG  LATGS RC +V DA SG  +  F+ +D   P  N         E N     YVR+VCFSPDGK L+TG++DHV+ VWD+++R + + ++   A+++SVD
Sbjct:  309 NIKLQNTFNHNSVVCCVRYSWNGLYLATGSNRCAHVLDATSGARIATFSKDDGTEPDAN---------ESNTIPDSYVRAVCFSPDGKWLITGAEDHVVKVWDVRNRTVKYHLQGHDADIYSVD 423          
BLAST of Gcaud2535.t1 vs. uniprot
Match: A0A5J4YTT5_PORPP (General transcriptional corepressor tupA n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTT5_PORPP)

HSP 1 Score: 119 bits (298), Expect = 5.530e-26
Identity = 68/178 (38.20%), Postives = 93/178 (52.25%), Query Frame = 0
Query:  177 NLNLQQTLPHESVVSCVRYSWNGEQLATGSRRCTNVFDANSGQHLFAFADEDSPR---------PMRNHGPQSSSNAEDNNNGGEYVRSVCFSPDGKLLVTGSDDHVLHVWDMQSRRLNHR-IEETANVFSVDISSTSKFIVSASGEEFAKLWNLKTGTLLSTLHDHDHRSDKNFCVA 344
            N+ LQ T+PHESVV CVRYSWNG+ +ATGS R   +FDA +G H+  F + D            P  + GP S+S          Y R+VCFSPDGK LVTGS+D  + +WD++SR + HR +    +++SV+                     L++G  L TL D +      FC A
Sbjct:  392 NIKLQNTIPHESVVCCVRYSWNGQYIATGSNRYAMMFDAATGGHVATFGNTDDANIGGGGDVAPPGSDGGPDSASTEN-------YFRAVCFSPDGKYLVTGSEDRAVRIWDIRSRTVKHRLVGHATDIYSVETXXXXXXXXXXXXXXXXXXXXLQSGHKLRTLEDTE------FCPA 556          
BLAST of Gcaud2535.t1 vs. uniprot
Match: A0A2V3INM8_9FLOR (General transcriptional corepressor tupA n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INM8_9FLOR)

HSP 1 Score: 106 bits (264), Expect = 1.080e-22
Identity = 65/169 (38.46%), Postives = 93/169 (55.03%), Query Frame = 0
Query:  178 LNLQQTLPHESVVSCVRYSWNGEQLATGSRRCTNVFDANSGQHLFAFA-DEDSPRPMRNHGPQSSSNAEDNNNGGEYVRSVCFSPDGKLLVTGSDDHVLHVWDMQSRRLNHRI-EETANVFSVDISSTSKFIVSASGEEFAKLWNLKTGTLLSTLHDHDHRSDKNFCVA 344
            + LQ  L  ++VVS V YSW+G+ +A G+    +VFDA SG+ LF FA +++   P   H                YVRS+CFSPDG+ LVTGS+     VW++ S  L H +     +V  VD+S+ ++FI SAS   +  LW+L +GT L TL +    +D    VA
Sbjct:    6 VQLQHGLAFDTVVSSVCYSWDGKYVALGTCNSAHVFDAASGRRLFRFATNKERSAPQHEH---------------FYVRSLCFSPDGQQLVTGSEGQSFKVWNLHSCTLQHSLLGHGMDVHCVDVSADNRFIASASTLNYVMLWDLHSGTRLQTLTNKYGPTDSVSSVA 159          
BLAST of Gcaud2535.t1 vs. uniprot
Match: A0A7S0BGJ5_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BGJ5_9RHOD)

HSP 1 Score: 105 bits (261), Expect = 1.580e-21
Identity = 53/126 (42.06%), Postives = 80/126 (63.49%), Query Frame = 0
Query:  177 NLNLQQTLPHESVVSCVRYSWNGEQLATGSRRCTNVFDANSGQHLFAFADEDSPRPMRNHGPQSSSNAEDNNNGGEYVRSVCFSPDGKLLVTGSDDHVLHVWDMQSRRLNHRIE-ETANVFSVDIS 301
            N+ LQ +  H+SVV CVRYS++G+ LATGS +C  +FDA +G  +  FA ++          Q S + +DN     Y R+VCFSPDGK L+TGS+D ++ VWD+++R + H +     +++SVD S
Sbjct:  137 NVKLQNSFVHDSVVCCVRYSYSGQYLATGSNKCAQIFDAATGAKIATFARDEVADQ------QYSDSQQDN-----YFRAVCFSPDGKWLITGSEDRLVRVWDVRTRTVKHELTGHETDIYSVDAS 251          
The following BLAST results are available for this feature:
BLAST of Gcaud2535.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IFX8_9FLOR3.940e-4146.67General transcriptional corepressor tupA n=1 Tax=G... [more]
A0A1X6PBN5_PORUM5.300e-3244.03Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0XJM1_9RHOD3.970e-2945.64Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A7S0ZG95_9RHOD4.250e-2943.87Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
R7QRF1_CHOCR2.550e-2839.70Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3J4E9_9FLOR1.760e-2637.06General transcriptional corepressor tupA n=1 Tax=G... [more]
A0A7S1XH44_9RHOD4.480e-2647.58Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4YTT5_PORPP5.530e-2638.20General transcriptional corepressor tupA n=1 Tax=P... [more]
A0A2V3INM8_9FLOR1.080e-2238.46General transcriptional corepressor tupA n=1 Tax=G... [more]
A0A7S0BGJ5_9RHOD1.580e-2142.06Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 282..320
e-value: 0.25
score: 20.4
coord: 235..279
e-value: 3.2E-6
score: 36.7
coord: 177..214
e-value: 0.34
score: 19.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 251..279
e-value: 2.3E-7
score: 31.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 288..329
score: 9.439068
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 254..288
score: 13.516088
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 126..344
e-value: 3.9E-42
score: 146.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 234..248
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 226..248
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availablePANTHERPTHR42968:SF10WD REPEAT-CONTAINING PROTEIN WDR-5.2-RELATEDcoord: 34..334
NoneNo IPR availablePANTHERPTHR42968WD REPEAT-CONTAININGcoord: 34..334
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 247..282
score: 10.653776
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 266..280
IPR006141Intein N-terminal splicing regionPROSITEPS50817INTEIN_N_TERcoord: 258..337
score: 7.909943
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 179..334

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3857_length_2856_cov_4.355877contigNODE_3857_length_2856_cov_4.355877:1523..2554 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2535.t1Gcaud2535.t1Gracilaria caudata M_176_S67 malemRNANODE_3857_length_2856_cov_4.355877 1523..2554 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2535.t1 ID=Gcaud2535.t1|Name=Gcaud2535.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=344bp
MHNNSELFPLVTTRTAEVNGSSSFPTSFHLPSLPQADPCSIEPRPTPPTT
SAGSEDNPKAFSGGPPLLASHGALHAPSLRSLPNAFTTPSQNPRDRPSNQ
RNMQIKENQPFQKQPSIAKPPSSSWNQNAMASSSQGRAVMEQSGTREPSD
ASHRTCPDEDWGFTFEKFPLDSKPEFNLNLQQTLPHESVVSCVRYSWNGE
QLATGSRRCTNVFDANSGQHLFAFADEDSPRPMRNHGPQSSSNAEDNNNG
GEYVRSVCFSPDGKLLVTGSDDHVLHVWDMQSRRLNHRIEETANVFSVDI
SSTSKFIVSASGEEFAKLWNLKTGTLLSTLHDHDHRSDKNFCVA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR006141Intein_N
IPR011047Quinoprotein_ADH-like_supfam