Gcaud2535.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2535.t1
Unique Name	Gcaud2535.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	344

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3857_length_2856_cov_4.355877	contig	NODE_3857_length_2856_cov_4.355877:1523..2554 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5111.M1WHW2
Preferred name	TUP1
PFAMs	Tup_N,WD40
Max annot lvl	4751\|Fungi
KEGG ko	ko:K06666
KEGG Pathway	ko04011,ko04111,map04011,map04111
GOs	GO:0000003,GO:0000122,GO:0000228,GO:0000429,GO:0000430,GO:0000433,GO:0000785,GO:0000790,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0001196,GO:0001198,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006355,GO:0006357,GO:0006950,GO:0006970,GO:0006996,GO:0007154,GO:0007155,GO:0007530,GO:0007531,GO:0007532,GO:0007584,GO:0008150,GO:0008289,GO:0009267,GO:0009372,GO:0009405,GO:0009605,GO:0009607,GO:0009628,GO:0009651,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016458,GO:0016584,GO:0017053,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019747,GO:0019899,GO:0022414,GO:0022607,GO:0022610,GO:0030154,GO:0030447,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032502,GO:0032879,GO:0032991,GO:0033554,GO:0033993,GO:0034728,GO:0035091,GO:0035690,GO:0035950,GO:0035952,GO:0035953,GO:0035955,GO:0036033,GO:0036166,GO:0036170,GO:0036171,GO:0036180,GO:0040007,GO:0040008,GO:0040029,GO:0042221,GO:0042304,GO:0042393,GO:0042493,GO:0042594,GO:0042826,GO:0043044,GO:0043156,GO:0043157,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044085,GO:0044111,GO:0044114,GO:0044115,GO:0044182,GO:0044403,GO:0044409,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044764,GO:0044877,GO:0045013,GO:0045014,GO:0045165,GO:0045814,GO:0045827,GO:0045833,GO:0045892,GO:0045893,GO:0045894,GO:0045926,GO:0045934,GO:0045935,GO:0045944,GO:0045990,GO:0046015,GO:0046677,GO:0046688,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051828,GO:0051832,GO:0051834,GO:0052173,GO:0060255,GO:0060258,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0062012,GO:0065007,GO:0070013,GO:0070784,GO:0070887,GO:0071103,GO:0071214,GO:0071236,GO:0071241,GO:0071248,GO:0071280,GO:0071310,GO:0071396,GO:0071470,GO:0071472,GO:0071473,GO:0071496,GO:0071824,GO:0071840,GO:0072364,GO:0080025,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090088,GO:0090089,GO:0090568,GO:0097305,GO:0097306,GO:0097307,GO:0097308,GO:0098609,GO:0104004,GO:0140110,GO:1900428,GO:1900429,GO:1901700,GO:1901701,GO:1901981,GO:1902679,GO:1902680,GO:1902936,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2000217,GO:2000531,GO:2000877,GO:2000879,GO:2001020,GO:2001141
Evalue	2.48e-21
EggNOG OGs	KOG0266@1\|root,KOG0266@2759\|Eukaryota,38E6T@33154\|Opisthokonta,3NUUI@4751\|Fungi,3QMV0@4890\|Ascomycota,215MU@147550\|Sordariomycetes,3TF2K@5125\|Hypocreales,3G1IU@34397\|Clavicipitaceae
Description	WD domain, G-beta repeat
COG category	S
BRITE	ko00000,ko00001,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2535	Gcaud2535	Gracilaria caudata M_176_S67 male	gene	NODE_3857_length_2856_cov_4.355877 1523..2554 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2535.t1.CDS1	Gcaud2535.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3857_length_2856_cov_4.355877 1523..2554 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2535.t1.exon1	Gcaud2535.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3857_length_2856_cov_4.355877 1523..2554 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2535.t1.start1	Gcaud2535.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3857_length_2856_cov_4.355877 2552..2554 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2535.t1	Gcaud2535.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3857_length_2856_cov_4.355877 1523..2554 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3857_length_2856_cov_4.355877:1523..2554-
coding sequence from alignment at NODE_3857_length_2856_cov_4.355877:1523..2554-

mRNA sequence

>Gcaud2535.t1 ID=Gcaud2535.t1|Name=Gcaud2535.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=344bp
MHNNSELFPLVTTRTAEVNGSSSFPTSFHLPSLPQADPCSIEPRPTPPTT
SAGSEDNPKAFSGGPPLLASHGALHAPSLRSLPNAFTTPSQNPRDRPSNQ
RNMQIKENQPFQKQPSIAKPPSSSWNQNAMASSSQGRAVMEQSGTREPSD
ASHRTCPDEDWGFTFEKFPLDSKPEFNLNLQQTLPHESVVSCVRYSWNGE
QLATGSRRCTNVFDANSGQHLFAFADEDSPRPMRNHGPQSSSNAEDNNNG
GEYVRSVCFSPDGKLLVTGSDDHVLHVWDMQSRRLNHRIEETANVFSVDI
SSTSKFIVSASGEEFAKLWNLKTGTLLSTLHDHDHRSDKNFCVA

spliced messenger RNA

>Gcaud2535.t1 ID=Gcaud2535.t1|Name=Gcaud2535.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at NODE_3857_length_2856_cov_4.355877:1523..2554- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACAACAACAGTGAGCTCTTCCCCTTGGTTACGACTCGAACCGCTGA
AGTGAATGGCAGCTCGTCCTTTCCCACATCATTTCATCTTCCGTCTCTTC
CTCAAGCAGATCCATGTTCTATCGAACCAAGGCCGACTCCCCCTACCACT
TCTGCAGGATCTGAAGATAATCCAAAAGCCTTTTCCGGAGGGCCTCCTCT
TCTGGCTTCACATGGGGCACTACATGCGCCTTCTCTCCGTTCTTTGCCAA
ATGCGTTCACTACTCCATCTCAAAATCCACGAGACAGGCCCAGCAACCAA
CGAAATATGCAGATCAAGGAGAACCAACCATTTCAGAAGCAGCCCAGTAT
TGCGAAACCGCCCTCCTCCTCATGGAATCAAAATGCTATGGCCTCATCAT
CGCAAGGCAGGGCCGTAATGGAGCAAAGCGGCACCAGAGAGCCTTCAGAT
GCATCCCATCGGACCTGTCCGGACGAAGATTGGGGTTTCACTTTCGAAAA
GTTTCCCCTTGACTCCAAACCCGAATTCAATTTGAACCTGCAACAAACCC
TTCCACACGAATCAGTTGTTTCTTGTGTGCGTTACAGCTGGAATGGGGAG
CAGCTTGCAACAGGTTCAAGGCGTTGTACAAACGTGTTTGACGCCAACTC
TGGTCAGCATTTGTTCGCTTTCGCCGATGAAGATAGTCCGAGACCCATGC
GGAATCATGGTCCCCAGTCGAGTTCTAACGCAGAAGATAATAACAACGGA
GGAGAATATGTGCGAAGTGTTTGCTTTTCACCCGATGGCAAGCTGCTTGT
CACTGGTTCGGATGATCATGTTTTGCATGTATGGGATATGCAGAGTCGAA
GATTGAATCACAGAATCGAGGAAACTGCTAATGTGTTCTCCGTGGATATT
AGCTCCACAAGCAAGTTCATTGTCTCCGCTTCAGGCGAGGAGTTTGCAAA
GTTATGGAACCTGAAGACAGGCACGCTTCTTTCAACGCTACACGATCACG
ACCATCGATCGGATAAGAACTTTTGCGTTGCG

protein sequence of Gcaud2535.t1

>Gcaud2535.t1 ID=Gcaud2535.t1|Name=Gcaud2535.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=344bp
MHNNSELFPLVTTRTAEVNGSSSFPTSFHLPSLPQADPCSIEPRPTPPTT
SAGSEDNPKAFSGGPPLLASHGALHAPSLRSLPNAFTTPSQNPRDRPSNQ
RNMQIKENQPFQKQPSIAKPPSSSWNQNAMASSSQGRAVMEQSGTREPSD
ASHRTCPDEDWGFTFEKFPLDSKPEFNLNLQQTLPHESVVSCVRYSWNGE
QLATGSRRCTNVFDANSGQHLFAFADEDSPRPMRNHGPQSSSNAEDNNNG
GEYVRSVCFSPDGKLLVTGSDDHVLHVWDMQSRRLNHRIEETANVFSVDI
SSTSKFIVSASGEEFAKLWNLKTGTLLSTLHDHDHRSDKNFCVA

mRNA from alignment at NODE_3857_length_2856_cov_4.355877:1523..2554-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2535.t1 ID=Gcaud2535.t1|Name=Gcaud2535.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at NODE_3857_length_2856_cov_4.355877:1523..2554- (Gracilaria caudata M_176_S67 male)
ATGCACAACAACAGTGAGCTCTTCCCCTTGGTTACGACTCGAACCGCTGA
AGTGAATGGCAGCTCGTCCTTTCCCACATCATTTCATCTTCCGTCTCTTC
CTCAAGCAGATCCATGTTCTATCGAACCAAGGCCGACTCCCCCTACCACT
TCTGCAGGATCTGAAGATAATCCAAAAGCCTTTTCCGGAGGGCCTCCTCT
TCTGGCTTCACATGGGGCACTACATGCGCCTTCTCTCCGTTCTTTGCCAA
ATGCGTTCACTACTCCATCTCAAAATCCACGAGACAGGCCCAGCAACCAA
CGAAATATGCAGATCAAGGAGAACCAACCATTTCAGAAGCAGCCCAGTAT
TGCGAAACCGCCCTCCTCCTCATGGAATCAAAATGCTATGGCCTCATCAT
CGCAAGGCAGGGCCGTAATGGAGCAAAGCGGCACCAGAGAGCCTTCAGAT
GCATCCCATCGGACCTGTCCGGACGAAGATTGGGGTTTCACTTTCGAAAA
GTTTCCCCTTGACTCCAAACCCGAATTCAATTTGAACCTGCAACAAACCC
TTCCACACGAATCAGTTGTTTCTTGTGTGCGTTACAGCTGGAATGGGGAG
CAGCTTGCAACAGGTTCAAGGCGTTGTACAAACGTGTTTGACGCCAACTC
TGGTCAGCATTTGTTCGCTTTCGCCGATGAAGATAGTCCGAGACCCATGC
GGAATCATGGTCCCCAGTCGAGTTCTAACGCAGAAGATAATAACAACGGA
GGAGAATATGTGCGAAGTGTTTGCTTTTCACCCGATGGCAAGCTGCTTGT
CACTGGTTCGGATGATCATGTTTTGCATGTATGGGATATGCAGAGTCGAA
GATTGAATCACAGAATCGAGGAAACTGCTAATGTGTTCTCCGTGGATATT
AGCTCCACAAGCAAGTTCATTGTCTCCGCTTCAGGCGAGGAGTTTGCAAA
GTTATGGAACCTGAAGACAGGCACGCTTCTTTCAACGCTACACGATCACG
ACCATCGATCGGATAAGAACTTTTGCGTTGCG

Coding sequence (CDS) from alignment at NODE_3857_length_2856_cov_4.355877:1523..2554-

>Gcaud2535.t1 ID=Gcaud2535.t1|Name=Gcaud2535.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1032bp|location=Sequence derived from alignment at NODE_3857_length_2856_cov_4.355877:1523..2554- (Gracilaria caudata M_176_S67 male)
ATGCACAACAACAGTGAGCTCTTCCCCTTGGTTACGACTCGAACCGCTGA
AGTGAATGGCAGCTCGTCCTTTCCCACATCATTTCATCTTCCGTCTCTTC
CTCAAGCAGATCCATGTTCTATCGAACCAAGGCCGACTCCCCCTACCACT
TCTGCAGGATCTGAAGATAATCCAAAAGCCTTTTCCGGAGGGCCTCCTCT
TCTGGCTTCACATGGGGCACTACATGCGCCTTCTCTCCGTTCTTTGCCAA
ATGCGTTCACTACTCCATCTCAAAATCCACGAGACAGGCCCAGCAACCAA
CGAAATATGCAGATCAAGGAGAACCAACCATTTCAGAAGCAGCCCAGTAT
TGCGAAACCGCCCTCCTCCTCATGGAATCAAAATGCTATGGCCTCATCAT
CGCAAGGCAGGGCCGTAATGGAGCAAAGCGGCACCAGAGAGCCTTCAGAT
GCATCCCATCGGACCTGTCCGGACGAAGATTGGGGTTTCACTTTCGAAAA
GTTTCCCCTTGACTCCAAACCCGAATTCAATTTGAACCTGCAACAAACCC
TTCCACACGAATCAGTTGTTTCTTGTGTGCGTTACAGCTGGAATGGGGAG
CAGCTTGCAACAGGTTCAAGGCGTTGTACAAACGTGTTTGACGCCAACTC
TGGTCAGCATTTGTTCGCTTTCGCCGATGAAGATAGTCCGAGACCCATGC
GGAATCATGGTCCCCAGTCGAGTTCTAACGCAGAAGATAATAACAACGGA
GGAGAATATGTGCGAAGTGTTTGCTTTTCACCCGATGGCAAGCTGCTTGT
CACTGGTTCGGATGATCATGTTTTGCATGTATGGGATATGCAGAGTCGAA
GATTGAATCACAGAATCGAGGAAACTGCTAATGTGTTCTCCGTGGATATT
AGCTCCACAAGCAAGTTCATTGTCTCCGCTTCAGGCGAGGAGTTTGCAAA
GTTATGGAACCTGAAGACAGGCACGCTTCTTTCAACGCTACACGATCACG
ACCATCGATCGGATAAGAACTTTTGCGTTGCG