mRNA_F-serratus_M_contig1178.1432.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1178.1432.1
Unique NamemRNA_F-serratus_M_contig1178.1432.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1178.1432.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 2.370e-75
Identity = 143/369 (38.75%), Postives = 212/369 (57.45%), Query Frame = 1
Query:  163 KAIYGLVQAWRYWNNKLCADMTAIRFEQEKADPCVFRKVIDGEAEMVVVVHVDDILAHAKHQAAMDRFAADLGHKFKLKNMDNVGYCMGCHITWNLKVRELKLDQHLYVESMVKRFDVKKATRILAMSAVPTLSKAD*PRNPKKEEMRKFPYREAVGAIMWTATMTRRDIACAVRAVARFCENTGPAHKKAVMKILQYLVHTKGWGITYGGQGCE-LCMEAYTDSDLGACLDTRRSVSGAVLMLAKGAISWHSRMQEETASGTSDAEYVALSEVIKEVIFLKQVQEFMEPSMRIC*VNVFEDNEGSVKLATNKYASCRTKHIDVKHYVVRDAFDARKVSVAYVRSEDQHADLFTKPLDMQKFYKHAKFI 1266
            K++YGL QA R W+  L   + A+ FEQ  AD CVFR + DG   +++VVHVDDI A  + +   D+F ADL     +KN+  + +  GC    N +   L + Q  + + +   + V    R + MS+   LS  D       E   +FP+RE VG++MW AT TR DIA AVRAVAR+C +    H  A M IL Y   T  +GI++     E   ++ Y D+D  +    RRSVSG ++    GA+SW SR Q+     T++AEYVAL +V+KE++FL+Q+  FM P + +  + VFEDN+G+++LA N  ++  +KHIDV+H+ +R+  + +++SV +V S  Q AD  TK L    F  H  F+
Sbjct:   97 KSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERC-DKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGG-RSVPMSSGVKLSDFD-----ADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFV 458          
BLAST of mRNA_F-serratus_M_contig1178.1432.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 4.880e-75
Identity = 146/386 (37.82%), Postives = 220/386 (56.99%), Query Frame = 1
Query:  136 KVPGAVGRL--------KAIYGLVQAWRYWNNKLCADMTAIRFEQEKADPCVFRKVIDGEAEMVVVVHVDDILAHAKHQAAMDRFAADLGHKFKLKNMDNVGYCMGCHITWNLKVRELKLDQHLYVESMVKRFDVKKATRILAMSAVPTLSKAD*PRNPKKEEMRKFPYREAVGAIMWTATMTRRDIACAVRAVARFCENTGPAHKKAVMKILQYLVHTKGWGITYG-GQGCELCMEAYTDSDLGACLDTRRSVSGAVLMLAKGAISWHSRMQEETASGTSDAEYVALSEVIKEVIFLKQVQEFMEPSMRIC*VNVFEDNEGSVKLATNKYASCRTKHIDVKHYVVRDAFDARKVSVAYVRSEDQHADLFTKPLDMQKFYKHAKFI 1266
            ++P   GRL        K++YGL QA R W++ L   +  + F Q  AD CVFR + +G   + +VVHVDDI +  + +   D+F  DL     +KN+ ++ +  GC    +     LK+ Q  Y E +   F V+    I     +  LS+ D     + EE+  +P+RE +G++MW AT TR DIA AVRAVAR+C +    H +A + IL Y+V T   GIT+  G    L ME + D+D  +    RRSVSG ++M   G ISW SR Q+     T++AEYV+L++V+KEV+FL+QV  FM P   +  + VFEDN+G+++LA N  ++  +KHIDV+H+ +R+    +++S+ +V S  QHAD  TK L    F  H  ++
Sbjct:   56 RLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD-----QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 434          
BLAST of mRNA_F-serratus_M_contig1178.1432.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 3.530e-73
Identity = 146/386 (37.82%), Postives = 220/386 (56.99%), Query Frame = 1
Query:  136 KVPGAVGRL--------KAIYGLVQAWRYWNNKLCADMTAIRFEQEKADPCVFRKVIDGEAEMVVVVHVDDILAHAKHQAAMDRFAADLGHKFKLKNMDNVGYCMGCHITWNLKVRELKLDQHLYVESMVKRFDVKKATRILAMSAVPTLSKAD*PRNPKKEEMRKFPYREAVGAIMWTATMTRRDIACAVRAVARFCENTGPAHKKAVMKILQYLVHTKGWGITYG-GQGCELCMEAYTDSDLGACLDTRRSVSGAVLMLAKGAISWHSRMQEETASGTSDAEYVALSEVIKEVIFLKQVQEFMEPSMRIC*VNVFEDNEGSVKLATNKYASCRTKHIDVKHYVVRDAFDARKVSVAYVRSEDQHADLFTKPLDMQKFYKHAKFI 1266
            ++P   GRL        K++YGL QA R W++ L   +  + F Q  AD CVFR + +G   + +VVHVDDI +  + +   D+F  DL     +KN+ ++ +  GC    +     LK+ Q  Y E +   F V+    I     +  LS+ D     + EE+  +P+RE +G++MW AT TR DIA AVRAVAR+C +    H +A + IL Y+V T   GIT+  G    L ME + D+D  +    RRSVSG ++M   G ISW SR Q+     T++AEYV+L++V+KEV+FL+QV  FM P   +  + VFEDN+G+++LA N  ++  +KHIDV+H+ +R+    +++S+ +V S  QHAD  TK L    F  H  ++
Sbjct:  230 RLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD-----QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 608          
BLAST of mRNA_F-serratus_M_contig1178.1432.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 1.780e-71
Identity = 131/369 (35.50%), Postives = 212/369 (57.45%), Query Frame = 1
Query:  163 KAIYGLVQAWRYWNNKLCADMTAIRFEQEKADPCVFRKVIDGEAEMVVVVHVDDILAHAKHQAAMDRFAADLGHKFKLKNMDNVGYCMGCHITWNLKVRELKLDQHLYVESMVKRFDVKKATRILAMSAVPTLSKAD*PRNPKKEEMRKFPYREAVGAIMWTATMTRRDIACAVRAVARFCENTGPAHKKAVMKILQYLVHTKGWGITYG-GQGCELCMEAYTDSDLGACLDTRRSVSGAVLMLAKGAISWHSRMQEETASGTSDAEYVALSEVIKEVIFLKQVQEFMEPSMRIC*VNVFEDNEGSVKLATNKYASCRTKHIDVKHYVVRDAFDARKVSVAYVRSEDQHADLFTKPLDMQKFYKHAKFI 1266
            K++YGL QA R+W+  L   +  + F Q  AD CVFR + +G   M++VVHVDDI A  + +   D+F  DL     +KN+  + +   C    +++   L++ Q  + E +   + ++   R + +     L+  D     + E     P+RE VG++MW AT TR DIA AVRAVAR+C +    H KA + IL Y+  T   GIT+  G    + M+ + D+D  +    RRSVSG ++M   G ++W SR Q+     T++AEYVA+++V+KEV+FL+QV  FM P   +  + VFEDN+G++++  N   +  +KHIDV+H+ +R+  + +++S+ +V ++ QHAD  TK +  + F  H  F+
Sbjct:   11 KSLYGLKQASRHWHAHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQKERC-DKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWG-RSVPLPVSVKLTDFD-----ENEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFV 372          
BLAST of mRNA_F-serratus_M_contig1178.1432.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 7.070e-71
Identity = 135/386 (34.97%), Postives = 218/386 (56.48%), Query Frame = 1
Query:  136 KVPGAVGRL--------KAIYGLVQAWRYWNNKLCADMTAIRFEQEKADPCVFRKVIDGEAEMVVVVHVDDILAHAKHQAAMDRFAADLGHKFKLKNMDNVGYCMGCHITWNLKVRELKLDQHLYVESMVKRFDVKKATRILAMSAVPTLSKAD*PRNPKKEEMRKFPYREAVGAIMWTATMTRRDIACAVRAVARFCENTGPAHKKAVMKILQYLVHTKGWGITYG-GQGCELCMEAYTDSDLGACLDTRRSVSGAVLMLAKGAISWHSRMQEETASGTSDAEYVALSEVIKEVIFLKQVQEFMEPSMRIC*VNVFEDNEGSVKLATNKYASCRTKHIDVKHYVVRDAFDARKVSVAYVRSEDQHADLFTKPLDMQKFYKHAKFI 1266
            ++P   GRL        K++YGL QA R+W++ L   +  + F Q  AD CVFR + +G   M++VVHVDDI A  + +   D+F  DL     +KN+  + +   C    +++   L++ Q  + E +   + ++   R + +     L+  D     + E     P+RE VG++MW AT TR DIA AVRAVAR+C +    H KA + IL Y+  T   GIT+  G    + M+ + D+D  +    RRSVSG ++M   G ++W SR Q+     T++AEYVA+++V+KEV+FL+QV  FM P   +  + VFEDN+G++++A N   +  +KHIDV+H+ +R+  + +++S+ +V +  QHAD  TK +  +    H  F+
Sbjct:   56 RLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQKERC-DKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWG-RSVPLPVSVKLTDFD-----ENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFV 434          
BLAST of mRNA_F-serratus_M_contig1178.1432.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 2.800e-70
Identity = 143/369 (38.75%), Postives = 212/369 (57.45%), Query Frame = 1
Query:  163 KAIYGLVQAWRYWNNKLCADMTAIRFEQEKADPCVFRKVIDGEAEMVVVVHVDDILAHAKHQAAMDRFAADLGHKFKLKNMDNVGYCMGCHITWNLKVRELKLDQHLYVESMVKRFDVKKATRILAMSAVPTLSKAD*PRNPKKEEMRKFPYREAVGAIMWTATMTRRDIACAVRAVARFCENTGPAHKKAVMKILQYLVHTKGWGITYGGQGCE-LCMEAYTDSDLGACLDTRRSVSGAVLMLAKGAISWHSRMQEETASGTSDAEYVALSEVIKEVIFLKQVQEFMEPSMRIC*VNVFEDNEGSVKLATNKYASCRTKHIDVKHYVVRDAFDARKVSVAYVRSEDQHADLFTKPLDMQKFYKHAKFI 1266
            K++YGL QA R W+  L   + A+ FEQ  AD CVFR + DG   +++VVHVDDI A  + +   D+F ADL     +KN+  + +  GC    N +   L + Q  + + +   + V    R + MS+   LS  D       E   +FP+RE VG++MW AT TR DIA AVRAVAR+C +    H  A M IL Y   T  +GI++     E   ++ Y D+D  +    RRSVSG ++    GA+SW SR Q+     T++AEYVAL +V+KE++FL+Q+  FM P + +  + VFEDN+G+++LA N  ++  +KHIDV+H+ +R+  + +++SV +V S  Q AD  TK L    F  H  F+
Sbjct: 1433 KSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERC-DKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGG-RSVPMSSGVKLSDFD-----ADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFV 1794          
BLAST of mRNA_F-serratus_M_contig1178.1432.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 3.730e-70
Identity = 142/369 (38.48%), Postives = 211/369 (57.18%), Query Frame = 1
Query:  163 KAIYGLVQAWRYWNNKLCADMTAIRFEQEKADPCVFRKVIDGEAEMVVVVHVDDILAHAKHQAAMDRFAADLGHKFKLKNMDNVGYCMGCHITWNLKVRELKLDQHLYVESMVKRFDVKKATRILAMSAVPTLSKAD*PRNPKKEEMRKFPYREAVGAIMWTATMTRRDIACAVRAVARFCENTGPAHKKAVMKILQYLVHTKGWGITYGGQGCE-LCMEAYTDSDLGACLDTRRSVSGAVLMLAKGAISWHSRMQEETASGTSDAEYVALSEVIKEVIFLKQVQEFMEPSMRIC*VNVFEDNEGSVKLATNKYASCRTKHIDVKHYVVRDAFDARKVSVAYVRSEDQHADLFTKPLDMQKFYKHAKFI 1266
            K++YGL QA R W+  L   + A+ FEQ  AD CVFR + DG   +++VVHVDDI A  + +   D+F ADL     +KN+  + +  GC    N +   L + Q  + + +   + V    R + MS+   LS  D       E    FP+RE VG++MW AT TR DIA AVRAVAR+C +    H  A M IL Y   T  +GI++     E   ++ Y D+D  +    RRSVSG ++    GA+SW SR Q+     T++AEYVAL +V+KE++FL+Q+  FM P + +  + +FEDN+G+++LA N  ++  +KHIDV+H+ +R+  + +++SV +V S  Q AD  TK L    F  H  F+
Sbjct:  927 KSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERC-DKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGG-RSVPMSSGVKLSDFD-----ADEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFV 1288          
BLAST of mRNA_F-serratus_M_contig1178.1432.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 1.330e-69
Identity = 145/386 (37.56%), Postives = 220/386 (56.99%), Query Frame = 1
Query:  136 KVPGAVGRL--------KAIYGLVQAWRYWNNKLCADMTAIRFEQEKADPCVFRKVIDGEAEMVVVVHVDDILAHAKHQAAMDRFAADLGHKFKLKNMDNVGYCMGCHITWNLKVRELKLDQHLYVESMVKRFDVKKATRILAMSAVPTLSKAD*PRNPKKEEMRKFPYREAVGAIMWTATMTRRDIACAVRAVARFCENTGPAHKKAVMKILQYLVHTKGWGITYG-GQGCELCMEAYTDSDLGACLDTRRSVSGAVLMLAKGAISWHSRMQEETASGTSDAEYVALSEVIKEVIFLKQVQEFMEPSMRIC*VNVFEDNEGSVKLATNKYASCRTKHIDVKHYVVRDAFDARKVSVAYVRSEDQHADLFTKPLDMQKFYKHAKFI 1266
            ++P   GRL        K++YGL QA R W++ L   +  + F Q  AD CVFR + +G   + +VVHVDDI +  + +   D+F  DL     +KN+ ++ +  GC    +     LK+ Q  Y E +   F V+    I     +  LS+ D     + EE+  +P+RE +G++MW AT TR DIA AVRAVAR+C +    H +A + IL Y+V T   GIT+  G    L ME + D+D  +    RRSVSG ++M   G ISW SR Q+     T++AEYV+L++V+KEV+FL+QV  FM P   +  + VFEDN+G+++LA N  ++  +KHIDV+H+ +R+    +++S+ +V S  QHA+  TK L    F  H  ++
Sbjct:  751 RLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD-----QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDFEFHRNYV 1129          
BLAST of mRNA_F-serratus_M_contig1178.1432.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 3.260e-69
Identity = 142/365 (38.90%), Postives = 210/365 (57.53%), Query Frame = 1
Query:  163 KAIYGLVQAWRYWNNKLCADMTAIRFEQEKADPCVFRKVIDGEAEMVVVVHVDDILAHAKHQAAMDRFAADLGHKFKLKNMDNVGYCMGCHITWNLKVRELKLDQHLYVESMVKRFDVKKATRILAMSAVPTLSKAD*PRNPKKEEMRKFPYREAVGAIMWTATMTRRDIACAVRAVARFCENTGPAHKKAVMKILQYLVHTKGWGITYGGQGCE-LCMEAYTDSDLGACLDTRRSVSGAVLMLAKGAISWHSRMQEETASGTSDAEYVALSEVIKEVIFLKQVQEFMEPSMRIC*VNVFEDNEGSVKLATNKYASCRTKHIDVKHYVVRDAFDARKVSVAYVRSEDQHADLFTKPLDMQKFYKH 1254
            K++YGL QA R W+  L   + A+ FEQ  AD CVFR + DG   +++VVHVDDI A  + +   D+F ADL     +KN+  + +  GC    N +   L + Q  + + +   + V    R + MS+   LS  D       E   +FP+RE VG++MW AT TR DIA AVRAVAR+C +    H  A M IL Y   T  +GI++     E   ++ Y D+D  +    RRSVSG ++    GA+SW SR Q+     T++AEYVAL +V+KE++FL+Q+  FM P + +  + VFEDN+G+++LA N  ++  +KHIDV+H+ +R+  + +++SV +V S  Q AD  TK L    F  H
Sbjct: 1219 KSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERC-DKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGG-RSVPMSSGVKLSDFD-----ADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESH 1576          
BLAST of mRNA_F-serratus_M_contig1178.1432.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 3.510e-69
Identity = 142/365 (38.90%), Postives = 210/365 (57.53%), Query Frame = 1
Query:  163 KAIYGLVQAWRYWNNKLCADMTAIRFEQEKADPCVFRKVIDGEAEMVVVVHVDDILAHAKHQAAMDRFAADLGHKFKLKNMDNVGYCMGCHITWNLKVRELKLDQHLYVESMVKRFDVKKATRILAMSAVPTLSKAD*PRNPKKEEMRKFPYREAVGAIMWTATMTRRDIACAVRAVARFCENTGPAHKKAVMKILQYLVHTKGWGITYGGQGCE-LCMEAYTDSDLGACLDTRRSVSGAVLMLAKGAISWHSRMQEETASGTSDAEYVALSEVIKEVIFLKQVQEFMEPSMRIC*VNVFEDNEGSVKLATNKYASCRTKHIDVKHYVVRDAFDARKVSVAYVRSEDQHADLFTKPLDMQKFYKH 1254
            K++YGL QA R W+  L   + A+ FEQ  AD CVFR + DG   +++VVHVDDI A  + +   D+F ADL     +KN+  + +  GC    N +   L + Q  + + +   + V    R + MS+   LS  D       E   +FP+RE VG++MW AT TR DIA AVRAVAR+C +    H  A M IL Y   T  +GI++     E   ++ Y D+D  +    RRSVSG ++    GA+SW SR Q+     T++AEYVAL +V+KE++FL+Q+  FM P + +  + VFEDN+G+++LA N  ++  +KHIDV+H+ +R+  + +++SV +V S  Q AD  TK L    F  H
Sbjct: 1287 KSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERC-DKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGG-RSVPMSSGVKLSDFD-----ADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESH 1644          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1178.1432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFG2_9PHAE2.370e-7538.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE4.880e-7537.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE3.530e-7337.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4G9_9PHAE1.780e-7135.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE7.070e-7134.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J4N2_9PHAE2.800e-7038.75Integrase catalytic domain-containing protein n=18... [more]
A0A6H5JG40_9PHAE3.730e-7038.48Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5K2R1_9PHAE1.330e-6937.56Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5L867_9PHAE3.260e-6938.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBD4_9PHAE3.510e-6938.90Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1178contigF-serratus_M_contig1178:102805..104225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score88.6
Seed ortholog evalue3.3e-15
Seed eggNOG ortholog5111.M1VW57
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs21AV1@147550,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelSordariomycetes
Best eggNOG OGNA|NA|NA
Exons2
Model size1266
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1178.1432.1prot_F-serratus_M_contig1178.1432.1Fucus serratus malepolypeptideF-serratus_M_contig1178 103495..104195 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929078.5930865-UTR-F-serratus_M_contig1178:102804..1034941622929078.5930865-UTR-F-serratus_M_contig1178:102804..103494Fucus serratus maleUTRF-serratus_M_contig1178 102805..103494 -
1690962695.762678-UTR-F-serratus_M_contig1178:102804..1034941690962695.762678-UTR-F-serratus_M_contig1178:102804..103494Fucus serratus maleUTRF-serratus_M_contig1178 102805..103494 -
1622929078.6289227-UTR-F-serratus_M_contig1178:104195..1042251622929078.6289227-UTR-F-serratus_M_contig1178:104195..104225Fucus serratus maleUTRF-serratus_M_contig1178 104196..104225 -
1690962695.7888732-UTR-F-serratus_M_contig1178:104195..1042251690962695.7888732-UTR-F-serratus_M_contig1178:104195..104225Fucus serratus maleUTRF-serratus_M_contig1178 104196..104225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929078.6033628-CDS-F-serratus_M_contig1178:103494..1039331622929078.6033628-CDS-F-serratus_M_contig1178:103494..103933Fucus serratus maleCDSF-serratus_M_contig1178 103495..103933 -
1690962695.7718995-CDS-F-serratus_M_contig1178:103494..1039331690962695.7718995-CDS-F-serratus_M_contig1178:103494..103933Fucus serratus maleCDSF-serratus_M_contig1178 103495..103933 -
1622929078.6175656-CDS-F-serratus_M_contig1178:104088..1041951622929078.6175656-CDS-F-serratus_M_contig1178:104088..104195Fucus serratus maleCDSF-serratus_M_contig1178 104089..104195 -
1690962695.7799761-CDS-F-serratus_M_contig1178:104088..1041951690962695.7799761-CDS-F-serratus_M_contig1178:104088..104195Fucus serratus maleCDSF-serratus_M_contig1178 104089..104195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1178.1432.1

>prot_F-serratus_M_contig1178.1432.1 ID=prot_F-serratus_M_contig1178.1432.1|Name=mRNA_F-serratus_M_contig1178.1432.1|organism=Fucus serratus male|type=polypeptide|length=182bp
MLYQRKFGQGGKVEKYKYRLVAQGFWQVEGVHYTEKVPGAVGRLKAIYGL
VQAWRYWNNKLCADMTAIRFEQEKADPCVFRKVIDGEAEMVVVVHVDDIL
AHAKHQAAMDRFAADLGHKFKLKNMDNVGYCMGCHITWNLKVRELKLDQH
LYVESMVKRFDVKKATRILAMSAVPTLSKAD*
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mRNA from alignment at F-serratus_M_contig1178:102805..104225-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1178.1432.1 ID=mRNA_F-serratus_M_contig1178.1432.1|Name=mRNA_F-serratus_M_contig1178.1432.1|organism=Fucus serratus male|type=mRNA|length=1421bp|location=Sequence derived from alignment at F-serratus_M_contig1178:102805..104225- (Fucus serratus male)
CCGAAGGATAAGCTCGTGGTTGACACAAAAATGCTCTACCAGCGAAAATT CGGACAGGGCGGTAAGGTCGAGAAGTACAAGTACCGACTTGTCGCTCAAG GGTTCTGGCAGGTGGAAGGTGTGCACTACACAGAAAAGTACTCGCCCACG CCAGCGACCGCGTCAATCCGGATGCTTTTGGTGATGGCAGGAGCCAAGGA CGGGAAGCTGCGCCATTTCGACGCGAAGCAGGCATTTTTGAAGGCGGATA TGAGCGAAGAAAAATACATTAAGATCCCCGAGGAATTCCAAGAGTTCCGG GGGCAGTGGGACGGCTGAAGGCCATTTACGGACTCGTACAGGCGTGGAGG TACTGGAACAACAAGTTATGTGCCGACATGACGGCAATTAGATTCGAGCA GGAAAAAGCGGATCCATGTGTGTTCCGCAAGGTCATTGACGGCGAGGCGG AGATGGTGGTGGTCGTACACGTAGATGATATTCTTGCCCACGCCAAACAC CAAGCGGCGATGGATAGATTCGCGGCTGACCTTGGACATAAGTTCAAATT GAAGAACATGGACAACGTCGGGTACTGCATGGGCTGTCACATCACATGGA ACCTCAAGGTGCGAGAGTTGAAGCTCGACCAACACTTGTACGTTGAGTCG ATGGTAAAAAGGTTTGACGTCAAGAAGGCAACTAGAATACTGGCTATGTC GGCGGTGCCAACGCTCTCAAAGGCGGACTAACCGCGGAACCCGAAGAAGG AAGAGATGAGGAAATTCCCGTACCGGGAGGCAGTGGGGGCAATTATGTGG ACGGCGACGATGACACGGCGTGACATCGCGTGCGCCGTACGCGCCGTGGC CAGATTCTGCGAAAACACTGGGCCGGCGCATAAGAAGGCAGTGATGAAGA TCTTGCAGTATCTCGTTCACACGAAAGGATGGGGGATTACGTACGGTGGA CAGGGCTGTGAACTCTGCATGGAAGCATACACGGACTCGGATCTCGGAGC TTGCCTGGATACGAGACGATCGGTTTCGGGTGCGGTGTTGATGCTGGCAA AGGGGGCGATCAGCTGGCACTCAAGGATGCAAGAAGAGACAGCATCGGGC ACCTCGGACGCAGAGTACGTTGCTTTATCAGAGGTGATAAAGGAAGTTAT ATTTTTGAAACAAGTGCAGGAGTTCATGGAACCGTCGATGAGGATTTGTT AAGTGAATGTGTTCGAAGACAATGAGGGGTCCGTCAAGCTGGCCACAAAC AAATATGCTAGTTGTAGGACTAAGCACATTGATGTGAAACACTATGTGGT GAGGGACGCGTTTGACGCGCGAAAGGTTAGCGTAGCGTATGTGAGGTCGG AAGATCAGCACGCGGACTTGTTCACCAAGCCGTTAGACATGCAAAAGTTT TACAAACACGCGAAGTTTATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1178:102805..104225-

>mRNA_F-serratus_M_contig1178.1432.1 ID=mRNA_F-serratus_M_contig1178.1432.1|Name=mRNA_F-serratus_M_contig1178.1432.1|organism=Fucus serratus male|type=CDS|length=1092bp|location=Sequence derived from alignment at F-serratus_M_contig1178:102805..104225- (Fucus serratus male)
ATGCTCTACCAGCGAAAATTCGGACAGGGCGGTAAGGTCGAGAAGTACAA
GTACCGACTTGTCGCTCAAGGGTTCTGGCAGGTGGAAGGTGTGCACTACA
CAGAAAAATGCTCTACCAGCGAAAATTCGGACAGGGCGGTAAGGTCGAGA
AGTACAAGTACCGACTTGTCGCTCAAGGGTTCTGGCAGGTGGAAGGTGTG
CACTACACAGAAAAAGTTCCGGGGGCAGTGGGACGGCTGAAGGCCATTTA
CGGACTCGTACAGGCGTGGAGGTACTGGAACAACAAGTTATGTGCCGACA
TGACGGCAATTAGATTCGAGCAGGAAAAAGCGGATCCATGTGTGTTCCGC
AAGGTCATTGACGGCGAGGCGGAGATGGTGGTGGTCGTACACGTAGATGA
TATTCTTGCCCACGCCAAACACCAAGCGGCGATGGATAGATTCGCGGCTG
ACCTTGGACATAAGTTCAAATTGAAGAACATGGACAACGTCGGGTACTGC
ATGGGCTGTCACATCACATGGAACCTCAAGGTGCGAGAGTTGAAGCTCGA
CCAACACTTGTACGTTGAGTCGATGGTAAAAAGGTTTGACGTCAAGAAGG
CAACTAGAATACTGGCTATGTCGGCGGTGCCAACGCTCTCAAAGGCGGAC
TAAAGTTCCGGGGGCAGTGGGACGGCTGAAGGCCATTTACGGACTCGTAC
AGGCGTGGAGGTACTGGAACAACAAGTTATGTGCCGACATGACGGCAATT
AGATTCGAGCAGGAAAAAGCGGATCCATGTGTGTTCCGCAAGGTCATTGA
CGGCGAGGCGGAGATGGTGGTGGTCGTACACGTAGATGATATTCTTGCCC
ACGCCAAACACCAAGCGGCGATGGATAGATTCGCGGCTGACCTTGGACAT
AAGTTCAAATTGAAGAACATGGACAACGTCGGGTACTGCATGGGCTGTCA
CATCACATGGAACCTCAAGGTGCGAGAGTTGAAGCTCGACCAACACTTGT
ACGTTGAGTCGATGGTAAAAAGGTTTGACGTCAAGAAGGCAACTAGAATA
CTGGCTATGTCGGCGGTGCCAACGCTCTCAAAGGCGGACTAA
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