mRNA_F-serratus_M_contig69.17987.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig69.17987.1 vs. uniprot
Match: D7FIZ3_ECTSI (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ3_ECTSI) HSP 1 Score: 300 bits (768), Expect = 3.700e-96 Identity = 151/256 (58.98%), Postives = 191/256 (74.61%), Query Frame = 2
Query: 269 PRFLSLGDGNELLQIALASEDSILAGERTFCYRGLGLRAEVQPFPNSGPVERALGWMGLRDDRVIKWTNEGNAPSYVALAAPIPGKVVPVDLAQSGPILVKPRIFLCSVAENDVSTNKLKLTPEGPFPQHHVEMRRLSGSGMCYIQAGGAASQKTLGRSESMVVEMGCIAAISTSCKIAAEELTG-LIREPPYSQGFPVKVTGPGTVFIQSTHAARMWRHRLVQRP---GASGYEMMKAAAF----MIGILVLLSW 1012
PRFLSLG+G+E+LQ+AL D+ILA E+ F YRGLGL+ E+QP +GP+ RALGW+G+++DRV+K+TNEGN+P+Y+ L A +PGKV+PV LA+SG +L KP +FLCSV END+ST K+KL EG Q VEMR+++G+GMCYI GGAA QK LGR ESMVVE GC+AA+S +CKI EE G LIREPPY QGF VK+TGPG+VFIQSTH R+ R R G+ G +MMKAA MI + +L W
Sbjct: 18 PRFLSLGEGSEVLQVALCPGDAILANEKAFVYRGLGLQQELQP---TGPMGRALGWIGVKNDRVVKFTNEGNSPTYLGLTASLPGKVIPVSLAKSGTLLAKPSVFLCSVVENDISTAKIKLQSEGQSSQQSVEMRKIAGAGMCYIHGGGAAVQKALGRGESMVVEFGCVAAVSDACKIVPEERNGPLIREPPYFQGFQVKITGPGSVFIQSTHTGRLSRASRADRVAQGGSGGGDMMKAAVLTLVIMIVVFTVLDW 270
BLAST of mRNA_F-serratus_M_contig69.17987.1 vs. uniprot
Match: D8R929_SELML (Altered inheritance of mitochondria protein 24, mitochondrial n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R929_SELML) HSP 1 Score: 102 bits (254), Expect = 9.050e-21 Identity = 80/263 (30.42%), Postives = 131/263 (49.81%), Query Frame = 2
Query: 275 FLSLGDGNELLQIALASEDSILAGERTFCYRGLGLRAEVQ-PFPNSGPVERALGWMGLRDDRVIKWTNEGNAPSYVALAAPIPGKVVPVDLAQ-SGPILVKPRIFLCSVAENDVSTNKLKLTPE----GPFPQH--HVEMRRLSGSGMCYIQAGGAASQKTLGRSESMVVEMGCIAAISTSCKIAAEELTGLIREPPYSQGFPVK--VTGPGTVFIQSTHAARMWRHRLVQRPGASGYEMMKAAAFMIGILVLLSWMFIIYNI 1033
F G ++LQI L ++ I A + CY ++AEV P N+G L WM R D +TN G+ Y+ L AP +++P+DLA G I+ + FL SV NDV+ L TP G F + ++L G G+ +I AGG+ QK L R E +VV++GC+ A++++ + ++ + R + P + +TGPG VFIQS + R+ H++ + A + G+ + L++ I ++
Sbjct: 26 FQIFGFEAQVLQIMLKPQEKIQAKSGSMCYTSGSIQAEVNVPQENAGVG--VLQWMMGRPDTSTTFTNAGSEDGYIGLGAPSLARILPIDLAVFGGEIICQREAFLGSV--NDVTVKHL--TPRRVRVGYFGADVGGLLTQKLVGQGLAFITAGGSVLQKKLSRGELLVVDIGCLVAMTSAVECEIKQASPAARRAFFGGECPFQAHLTGPGVVFIQSLPSQRL-AHKIARTISAPHFRDNPRFFISAGVFLFLAYAMIFASL 281
BLAST of mRNA_F-serratus_M_contig69.17987.1 vs. uniprot
Match: A0A2R6XQA1_MARPO (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XQA1_MARPO) HSP 1 Score: 101 bits (252), Expect = 1.570e-20 Identity = 68/211 (32.23%), Postives = 106/211 (50.24%), Query Frame = 2
Query: 275 FLSLGDGNELLQIALASEDSILAGERTFCYRGLGLRAEVQ-PFPNSGPVERALGWMGLRDDRVIKWTNEGNAPSYVALAAPIPGKVVPVDLAQSGPILVKPR-IFLCSVAENDVSTNKLKLTPEGPFPQHHVEMRRLSGSGMCYIQAGGAASQKTLGRSESMVVEMGCIAAISTSCKIAAEELTGLIREPPYSQGF-PVKVTGPGTVFIQS 898
F LG ++LQI L ++ + A + CY ++ E P N+G V W+ + D + + N G Y+ L AP +V+P+DLA G ++ R FLCS+ + VS + G F M++L G G+ +I AGG+ QK L R E +VV+ GC+ A++TS ++ + L R + +TGPG VF+QS
Sbjct: 25 FQILGGEAQVLQIMLKPQEKVTARTGSMCYMSDAVQTETNVPAENAGNV--IWQWLFGKVDAISTYVNNGTQDGYIGLGAPSLARVLPIDLAVFGEEIICQRDSFLCSINDVSVSPVATRRARPGMFGGEGFMMQKLVGRGLAFITAGGSIIQKHLARGEVLVVDAGCLVAMTTSVELELKYAGPLKRAFFGGENLLHAHLTGPGVVFVQS 233
BLAST of mRNA_F-serratus_M_contig69.17987.1 vs. uniprot
Match: A0A0K9PRK4_ZOSMR (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PRK4_ZOSMR) HSP 1 Score: 99.8 bits (247), Expect = 7.720e-20 Identity = 72/225 (32.00%), Postives = 115/225 (51.11%), Query Frame = 2
Query: 275 FLSLGDGNELLQIALASEDSILAGERTFCYRGLGLRAE-VQPFPNSGPVERALGWMGLRDDRVIKWTNEGNAPSYVALAAPIPGKVVPVDLAQ-SGPILVKPRIFLCSVAENDVSTNKLKLTPEGP--FPQHHVEMR-RLSGSGMCYIQAGGAASQKTLGRSESMVVEMGCIAAISTSCKIAAEELTGLIREPPYSQG---FPVKVTGPGTVFIQSTHAARMWRH 925
F LG +++QI L S + A + CY ++ + V G V + L W+ + I N G+ YV +AAP PG+++P+DLA G +L +P FLCSV NDV+ + P G P + +R +L G G+ ++ +GG+ +QKTL E++V++ CI A++++ + + R G V +TGPG VFIQS R+ +H
Sbjct: 25 FQILGGEAQIVQIMLKSLQKVTAKPGSMCYMSGSIQMDNVYALEQDGGVWQ-LQWIFGKTAISINLLNSGSDDGYVGIAAPSPGRILPIDLANFGGELLCQPDAFLCSV--NDVTVSNSLEHPRGRNIMPGAEIVLRQKLVGQGLAFLVSGGSVAQKTLQPGETLVMDSACIIAMTSTISFQIKNMNA--RRAIIFGGENHMTVSLTGPGVVFIQSLPFYRLSKH 244
BLAST of mRNA_F-serratus_M_contig69.17987.1 vs. uniprot
Match: K4ADH9_SETIT (Altered inheritance of mitochondria protein 24, mitochondrial n=40 Tax=Poaceae TaxID=4479 RepID=K4ADH9_SETIT) HSP 1 Score: 93.6 bits (231), Expect = 1.050e-17 Identity = 80/263 (30.42%), Postives = 125/263 (47.53%), Query Frame = 2
Query: 275 FLSLGDGNELLQIALASEDSILAGERTFCYRGLGLRAEVQPFP-NSGPVERALGWMGLRDDRVIKWTNEGNAPSYVALAAPIPGKVVPVDLAQ-SGPILVKPRIFLCSVAENDVS-TNKLKLTPEG-PFPQHHVEMRRLSGSGMCYIQAGGAASQKTLGRSESMVVEMGCIAAISTSCKIAAEELTGLIREPPYSQG-FPVKVTGPGTVFIQSTHAARMWRHRLVQRPGAS---GYEMMKAAAFMIGILVL--LSWMFIIYNI 1033
F G ++LQ+ L S++ + A T CY ++ + P N G V + W+ + + N G+ YV +AAP PG+++PVDLA G +L FLCSV NDVS T+ ++ P + ++L G GM ++ GG+ QK L E + V+ CI A++T+ + L R + +TGPG VFIQS HRL QR + G + F I I++ L+++ I+ +I
Sbjct: 25 FQISGGDVQVLQVMLKSQEKLTAKPGTMCYMSGNMQMDNNYLPENDGGVWQ---WIFGKSVSSTVFFNTGSDDGYVGIAAPFPGRILPVDLANFGGELLCHADAFLCSV--NDVSVTSTVEPRPRNIEIGAEMILKQKLRGQGMAFLVGGGSVMQKILAPQEVITVDAACIVAMTTTINFQLKSPNQLRRAVFGGENQLTASLTGPGVVFIQSLPF-----HRLSQRIASRSVVGPSLRDNPKFFIQIVMFFFLAYVMIVSSI 277
BLAST of mRNA_F-serratus_M_contig69.17987.1 vs. uniprot
Match: A0A2A8D1C1_9BACT (TIGR00266 family protein n=1 Tax=Longibacter salinarum TaxID=1850348 RepID=A0A2A8D1C1_9BACT) HSP 1 Score: 92.8 bits (229), Expect = 1.220e-17 Identity = 66/215 (30.70%), Postives = 102/215 (47.44%), Query Frame = 2
Query: 275 FLSLGDGNELLQIALASEDSILAGERTFCYRGLGLRAEVQPFPNSGPVERALGWMGLRDDRVIKWTNEGNAPSYVALAAPIPGKVVPVDLAQSGPILVKPRIFLCSVAENDVSTNKLKLTPEGPFPQHHVEMRRLSGSGMCYIQAGGAASQKTLGRSESMVVEMGCIAAISTSCKIAAEELTGLIREPPYSQG-FPVKVTGPGTVFIQSTHAARM 916
F GD +L+++ L +++ A T Y G+ E+Q G + + + +T G + VA AAP PGK+VPVDL+Q L + FLC+ + +V K G F ++RL+G G ++ AGG + L E++ V+ GCIAA S + + G +G F K+TGPGTV++QS AR+
Sbjct: 11 FALKGDDMQLVEVELDPGEAVRAEAGTMLYMSDGV--EMQTDTGGGMFKGFKRMISGESFFITSFTYSGPSKGRVAFAAPYPGKIVPVDLSQHDGFLCQKDAFLCADQDVEVEVAFNKKLGAGLFGGEGFILQRLTGQGWAFVHAGGTIVEHKLEAGETLRVDTGCIAAFSGTVDYDINFVGGFRNALFGGEGVFLAKLTGPGTVYLQSLPFARL 223
BLAST of mRNA_F-serratus_M_contig69.17987.1 vs. uniprot
Match: A0A521RJ11_9GAMM (TIGR00266 family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521RJ11_9GAMM) HSP 1 Score: 90.9 bits (224), Expect = 5.610e-17 Identity = 62/212 (29.25%), Postives = 100/212 (47.17%), Query Frame = 2
Query: 287 GDGNELLQIALASEDSILAGERTFCYRGLGLRAEVQPFPNSGPVERALGWMGLRDDRVIKWTNEGNAPSYVALAAPIPGKVVPVDLAQ-SGPILVKPRIFLCSVAENDVSTNKLKLTPEGPFPQHHVEMRRLSGSGMCYIQAGGAASQKTLGRSESMVVEMGCIAAISTSCKIAAEELTGLIREPPYSQG-FPVKVTGPGTVFIQSTHAARM 916
GD +L+++ L + + A T Y G+ E+Q G + + + + N G A VA AAP PGK+VP DL G +L + FLC+ ++ K G F +++LSG+GM ++ AGG +K L E + V+ GC+ A + + + + G +G F K+TGPGTV++QS +R+
Sbjct: 11 GDDLQLVEVELDPGEGVRAEAGTMTYMEQGI--EMQTDTGGGVFQGFKRMLTGESFFITTFMNSGKAKRRVAFAAPYPGKIVPFDLDSFGGQVLCQKDSFLCAARGTEIEIAFTKKIGAGLFGGEGFILQKLSGNGMVFVHAGGTVIRKDLAAGEELRVDTGCLVAFAMTVDYDIQFIGGFKNALFGGEGLFLAKMTGPGTVYLQSLPFSRL 220
BLAST of mRNA_F-serratus_M_contig69.17987.1 vs. uniprot
Match: A0A7C7S3W1_9BACT (TIGR00266 family protein n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A7C7S3W1_9BACT) HSP 1 Score: 89.4 bits (220), Expect = 1.920e-16 Identity = 66/234 (28.21%), Postives = 109/234 (46.58%), Query Frame = 2
Query: 284 LGDGNELLQIALASEDSILAGERTFCYRGLGLRAEVQPFPNSGPVERALGWMGLRDDRVIK--------WTNEGNAPSYVALAAPIPGKVVPVDLAQ-SGPILVKPRIFLCSVAENDVSTNKLKLTPEGPFPQHHVEMRRLSGSGMCYIQAGGAASQKTLGRSESMVVEMGCIAAISTSCKIAAEELTGLIREPPYSQG-FPVKVTGPGTVFIQSTHAARMWRHRLVQRPGASG 955
+GD +++++ L ++++A Y G+ E + S P E G + RV+ ++NEG + VA AAP PGK++P+ LA G ++ + FLC+ ++ K G F ++RL G GM ++ GG +KTL +E + V+ GC+AA ++ E L +G F ++G GTV++QS +RM L P A G
Sbjct: 11 IGDDMQIVEVELDPGETVIAEAGAMNYMDDGITFEAKMGDGSNPGEGIFGKLLNVGKRVLTGESIFLTHFSNEGRSKKRVAFAAPYPGKIIPIHLADVQGELMCQKDAFLCAAFGTEIGIAFTKRLGAGFFGGEGFILQRLRGDGMTFVHVGGTVIRKTL-NNERIRVDTGCLAAFTSGIHYDIERAGSLKSMFFGGEGLFLATLSGTGTVWLQSLPFSRMADRILQHAPAAGG 243
BLAST of mRNA_F-serratus_M_contig69.17987.1 vs. uniprot
Match: A0A7C3BJY5_9CHLR (TIGR00266 family protein n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A7C3BJY5_9CHLR) HSP 1 Score: 89.4 bits (220), Expect = 2.180e-16 Identity = 65/233 (27.90%), Postives = 106/233 (45.49%), Query Frame = 2
Query: 287 GDGNELLQIALASEDSILAGERTFCYRGLGLRAEVQPFPNSGPVERALGWMGLRDDRVIK--------WTNEGNAPSYVALAAPIPGKVVPVDLAQSG-PILVKPRIFLCSVAENDVSTNKLKLTPEGPFPQHHVEMRRLSGSGMCYIQAGGAASQKTLGRSESMVVEMGCIAAISTSCKIAAEELTGLIREPPYSQG-FPVKVTGPGTVFIQSTHAARMWRHRLVQRPGASG 955
GD + ++I L +++++A Y G+ + + S P G +G R I +TN G +VA AP PGK+V VDL +G +L + FLC+ +++ + K G F +++L G G +I AGG +K L E ++V+ GCIAA +S + + + GL +G F + G G V++QS +R+ L P G
Sbjct: 13 GDDLQFVEIELDPQETVVAEAGAMMYMEDGISFDAKMGDGSNPKSGFFGALGSMAKRAITGESLFMTHFTNNGQGKKHVAFGAPYPGKIVAVDLDDTGGELLCQKNAFLCAALGTEITISFQKKFGAGLFGGEGFILQKLRGDGNIFIHAGGMVVEKQL-NGEKLMVDTGCIAAFESSIQYDIQRVGGLKSMALGGEGLFFATLQGTGRVWLQSLPFSRLADRVLANAPSVGG 244
BLAST of mRNA_F-serratus_M_contig69.17987.1 vs. uniprot
Match: A0A3L6TGM2_PANMI (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6TGM2_PANMI) HSP 1 Score: 89.7 bits (221), Expect = 2.180e-16 Identity = 76/236 (32.20%), Postives = 111/236 (47.03%), Query Frame = 2
Query: 275 FLSLGDGNELLQIALASEDSILAGERTFCYRGLGLRAEVQPFP-NSGPVERALGWMGLRDDRVIKWTNEGNAPSYVALAAPIPGKVVPVDLAQ-SGPILVKPRIFLCSVAENDVSTNKLKLTPEGPFPQHHVEM---RRLSGSGMCYIQAGGAASQKTLGRSESMVVEMGCIAAISTSCKIAAEELTGLIREPPYSQG-FPVKVTGPGTVFIQSTHAARMWRHRLVQRPGASGYEM 964
F G ++LQ+ L S++ + A T CY ++ + P N G V + W+ + + N G+ YV +AAP PG+++PVDLA G +L + FLCSV NDVS + P + EM ++L G GM ++ GG+ QK L E + V+ CI A++ + + L R +TGPG VFIQS HRL QR + YEM
Sbjct: 25 FQISGGDVQVLQVMLKSQEKLTAKPGTMCYMSGNMQMDNNYLPENDGGVWQ---WIFGKSVSSTVFFNPGSDDGYVGIAAPFPGRILPVDLANFGGELLCQADAFLCSV--NDVSVAST-VEPRPRNIEIGAEMILKQKLRGQGMAFLVGGGSVMQKILAPREVITVDAACIVAMTITINFQLKSPNQLRRAVFGGDNQLTASLTGPGVVFIQSLPF-----HRLSQR--IARYEM 247 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig69.17987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig69.17987.1 >prot_F-serratus_M_contig69.17987.1 ID=prot_F-serratus_M_contig69.17987.1|Name=mRNA_F-serratus_M_contig69.17987.1|organism=Fucus serratus male|type=polypeptide|length=273bp MDDQTTESANDTKTTPRFLSLGDGNELLQIALASEDSILAGERTFCYRGLback to top mRNA from alignment at F-serratus_M_contig69:718145..721129+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig69.17987.1 ID=mRNA_F-serratus_M_contig69.17987.1|Name=mRNA_F-serratus_M_contig69.17987.1|organism=Fucus serratus male|type=mRNA|length=2985bp|location=Sequence derived from alignment at F-serratus_M_contig69:718145..721129+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig69:718145..721129+ >mRNA_F-serratus_M_contig69.17987.1 ID=mRNA_F-serratus_M_contig69.17987.1|Name=mRNA_F-serratus_M_contig69.17987.1|organism=Fucus serratus male|type=CDS|length=1638bp|location=Sequence derived from alignment at F-serratus_M_contig69:718145..721129+ (Fucus serratus male)back to top |