mRNA_F-serratus_M_contig149.3352.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig149.3352.1
Unique NamemRNA_F-serratus_M_contig149.3352.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig149.3352.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 77.8 bits (190), Expect = 5.060e-15
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    1 ETEMLGMVENCVYKQVARPKDKLVIGTKMIYKRKNGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTSSTASFR 225
            E E+    +  V+++V RP+D+ +IG+K ++K K G DG+VEKYK RLVAQGF QVEG+ Y E ++P + + S R
Sbjct: 1015 EAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIR 1089          
BLAST of mRNA_F-serratus_M_contig149.3352.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR)

HSP 1 Score: 77.4 bits (189), Expect = 6.810e-15
Identity = 35/73 (47.95%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    7 EMLGMVENCVYKQVARPKDKLVIGTKMIYKRKNGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTSSTASFR 225
            E+L  V+  +Y +V RP+D+ V+G K +++ K G DG++EKYK R+VA+GF QVEGV YT+ ++P +  AS R
Sbjct:  304 ELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIR 376          
BLAST of mRNA_F-serratus_M_contig149.3352.1 vs. uniprot
Match: A0A060SUY4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SUY4_PYCCI)

HSP 1 Score: 75.5 bits (184), Expect = 3.270e-14
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    7 EMLGMVENCVYKQVARPKDKLVIGTKMIYKRKNGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTSSTASFR 225
            E+L   +   Y +V RP+++ V+G K +++ K G DG VE+YK RLVAQGF QVEG+ Y+E ++P S  AS R
Sbjct:  952 ELLAFAKAEPYDEVERPQNRKVVGCKWVFRLKRGADGSVERYKARLVAQGFTQVEGIDYSEMFAPVSKFASIR 1024          
BLAST of mRNA_F-serratus_M_contig149.3352.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY)

HSP 1 Score: 74.7 bits (182), Expect = 5.850e-14
Identity = 34/73 (46.58%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    7 EMLGMVENCVYKQVARPKDKLVIGTKMIYKRKNGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTSSTASFR 225
            EML  V+  ++ +V  PK++ V+G+K +++ K G +GK+EKYK RLVAQGF QV+G+ YTE ++P +   S R
Sbjct:   16 EMLAFVKANLFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIR 88          
BLAST of mRNA_F-serratus_M_contig149.3352.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 67.8 bits (164), Expect = 1.460e-12
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 ETEMLGMVENCVYKQVARPKDKLVIGTKMIYKRKNGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTSSTASFR 225
            E E+  +  N  +  V RP+ + V+  K ++KRK  +DG+VE+YK RLVA+G+ QVEG+ Y E +SP   T S R
Sbjct:   51 EEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIR 125          
BLAST of mRNA_F-serratus_M_contig149.3352.1 vs. uniprot
Match: UPI0015ADBDF9 (uncharacterized protein LOC118188897 n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015ADBDF9)

HSP 1 Score: 67.8 bits (164), Expect = 5.010e-12
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 ETEMLGMVENCVYKQVARPKDKLVIGTKMIYKRKNGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTSSTASFR 225
            E E+  +  N  +  V RP+ + V+  K ++KRK  +DG+VE+YK RLVA+G+ QVEG+ Y E +SP   T S R
Sbjct:    2 EKELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIR 76          
BLAST of mRNA_F-serratus_M_contig149.3352.1 vs. uniprot
Match: A0A1X1QSJ2_9GAMM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cycloclasticus sp. symbiont of Poecilosclerida sp. M TaxID=1840537 RepID=A0A1X1QSJ2_9GAMM)

HSP 1 Score: 65.5 bits (158), Expect = 9.950e-12
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 ETEMLGMVENCVYKQVARPKDKLVIGTKMIYKRKNGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTSSTASFR 225
            + EM  + +N V++ V  PKD+  +G+K ++K K  +DG VE YK RLVAQGF QV+G  Y E + P     S R
Sbjct:    2 KAEMRLLQDNDVWELVELPKDRKNVGSKWVFKVKTNEDGDVEHYKARLVAQGFMQVKGADYDEMFCPVVRLESLR 76          
BLAST of mRNA_F-serratus_M_contig149.3352.1 vs. uniprot
Match: A0A2I4GRT0_JUGRE (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Juglans regia TaxID=51240 RepID=A0A2I4GRT0_JUGRE)

HSP 1 Score: 65.1 bits (157), Expect = 1.400e-11
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 ETEMLGMVENCVYKQVARPKDKLVIGTKMIYKRKNGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTSSTASFR 225
            E E++ +  N  +K V+R  D  VIG+K +YK K   DG +E+ K RLVA+GF QV+GV ++E +SP    A+ R
Sbjct:   46 EEELVALAVNQTWKLVSRTADMNVIGSKWVYKAKLKADGTLERLKARLVAKGFSQVDGVDFSETFSPVVKPATIR 120          
BLAST of mRNA_F-serratus_M_contig149.3352.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 67.8 bits (164), Expect = 1.640e-11
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    7 EMLGMVENCVYKQVARPKDKLVIGTKMIYKRKNGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTSSTASFR 225
            E+  +  N  +K V  P +K  IG K IYK K   DG +E+YK RLVAQGF Q+EG+ Y E +SP +   S R
Sbjct:  103 EIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVR 175          
BLAST of mRNA_F-serratus_M_contig149.3352.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 67.8 bits (164), Expect = 1.680e-11
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    7 EMLGMVENCVYKQVARPKDKLVIGTKMIYKRKNGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTSSTASFR 225
            E+  +  N  +K V  P +K  IG K IYK K   DG +E+YK RLVAQGF Q+EG+ Y E +SP +   S R
Sbjct:  572 EIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVR 644          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig149.3352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK5.060e-1548.00Integrase catalytic domain-containing protein (Fra... [more]
A0A1C7MSU6_GRIFR6.810e-1547.95Retrovirus-related Pol polyprotein from transposon... [more]
A0A060SUY4_PYCCI3.270e-1447.95Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A2R6NNP3_9APHY5.850e-1446.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0015A81C6A1.460e-1244.00uncharacterized mitochondrial protein AtMg00820-li... [more]
UPI0015ADBDF95.010e-1244.00uncharacterized protein LOC118188897 n=1 Tax=Stego... [more]
A0A1X1QSJ2_9GAMM9.950e-1244.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I4GRT0_JUGRE1.400e-1144.00uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A438GNV2_VITVI1.640e-1146.58Retrovirus-related Pol polyprotein from transposon... [more]
A0A438E4T4_VITVI1.680e-1146.58Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig149contigF-serratus_M_contig149:301194..301418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.1
Seed ortholog evalue1.5e-08
Seed eggNOG ortholog3827.XP_004516035.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA RNA polymerases superfamily protein
EggNOG OGs388SY@33090,3GND2@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size225
Cds size216
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929463.3095706-UTR-F-serratus_M_contig149:301193..3012021622929463.3095706-UTR-F-serratus_M_contig149:301193..301202Fucus serratus maleUTRF-serratus_M_contig149 301194..301202 +
1690962864.4000978-UTR-F-serratus_M_contig149:301193..3012021690962864.4000978-UTR-F-serratus_M_contig149:301193..301202Fucus serratus maleUTRF-serratus_M_contig149 301194..301202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929463.350528-CDS-F-serratus_M_contig149:301202..3014181622929463.350528-CDS-F-serratus_M_contig149:301202..301418Fucus serratus maleCDSF-serratus_M_contig149 301203..301418 +
1690962864.4112709-CDS-F-serratus_M_contig149:301202..3014181690962864.4112709-CDS-F-serratus_M_contig149:301202..301418Fucus serratus maleCDSF-serratus_M_contig149 301203..301418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig149.3352.1prot_F-serratus_M_contig149.3352.1Fucus serratus malepolypeptideF-serratus_M_contig149 301203..301418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig149.3352.1

>prot_F-serratus_M_contig149.3352.1 ID=prot_F-serratus_M_contig149.3352.1|Name=mRNA_F-serratus_M_contig149.3352.1|organism=Fucus serratus male|type=polypeptide|length=72bp
MLGMVENCVYKQVARPKDKLVIGTKMIYKRKNGQDGKVEKYKCRLVAQGF
WQVEGVHYTEKYSPTSSTASFR
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mRNA from alignment at F-serratus_M_contig149:301194..301418+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig149.3352.1 ID=mRNA_F-serratus_M_contig149.3352.1|Name=mRNA_F-serratus_M_contig149.3352.1|organism=Fucus serratus male|type=mRNA|length=225bp|location=Sequence derived from alignment at F-serratus_M_contig149:301194..301418+ (Fucus serratus male)
GAAACTGAGATGCTTGGAATGGTCGAGAACTGCGTTTATAAGCAGGTGGC TCGGCCGAAGGATAAGCTCGTGATTGGCACTAAAATGATATACAAGCGAA AAAACGGACAGGACGGCAAGGTCGAGAAGTACAAGTGTCGACTTGTCGCT CAAGGGTTTTGGCAGGTGGAAGGTGTGCATTACACGGAAAAGTACTCGCC CACGTCATCAACCGCGTCATTCAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig149:301194..301418+

>mRNA_F-serratus_M_contig149.3352.1 ID=mRNA_F-serratus_M_contig149.3352.1|Name=mRNA_F-serratus_M_contig149.3352.1|organism=Fucus serratus male|type=CDS|length=432bp|location=Sequence derived from alignment at F-serratus_M_contig149:301194..301418+ (Fucus serratus male)
ATGCTTGGAATGGTCGAGAACTGCGTTTATAAGCAGGTGGCTCGGCCGAA
GGATAAGCTCGTGATTGGCACTAAAATGATATACAAGCGAAAAAACGGAC
AGGACGGCAAGGTCGAGAAGTACAAGTGTCGACTTGTCGCTCAAGGGTTT
TGGCAGGTGGAAGGTGTGCATTACACGGAAAAGTACTCGCCCACGTCATC
AACCGCGTCATTCAGAATGCTTGGAATGGTCGAGAACTGCGTTTATAAGC
AGGTGGCTCGGCCGAAGGATAAGCTCGTGATTGGCACTAAAATGATATAC
AAGCGAAAAAACGGACAGGACGGCAAGGTCGAGAAGTACAAGTGTCGACT
TGTCGCTCAAGGGTTTTGGCAGGTGGAAGGTGTGCATTACACGGAAAAGT
ACTCGCCCACGTCATCAACCGCGTCATTCAGA
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