mRNA_F-serratus_M_contig120.1597.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 201 bits (512), Expect = 7.210e-59 Identity = 113/250 (45.20%), Postives = 153/250 (61.20%), Query Frame = 1
Query: 1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVKKEAKIPAASGVLTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR 747
GD +Y GC R+ LK Q Y E + F V+ +IP G L LS+ D + EE+ +P+RE +G+LMW AT TRPDIA AVRA AR+C +P H +A + I Y++ T D GIT+ G GL ME + D+D+ + RRSVSG ++M G ISW SR Q+ T+EAEYV+LA+ +K+VLFLRQV FM P + + VFEDN+GAI+LA N ++ +KHIDV+HH +R
Sbjct: 153 GDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVG-LKLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIR 395
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE) HSP 1 Score: 198 bits (503), Expect = 9.310e-59 Identity = 112/250 (44.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query: 1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVKKEAKIPAASGVLTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR 747
GD +Y GC R+ LK Q Y E + F V+ +IP G + LS+ D + EE+ +P+RE +G+LMW AT TRPDIA AVRA AR+C +P H +A + I Y++ T D GIT+ G GL ME + D+D+ + RRSVSG ++M G ISW SR Q+ T+EAEYV+LA+ +K+VLFLRQV FM P + + VFEDN+GAI+LA N ++ KHIDV+HH +R
Sbjct: 52 GDLIWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVG-MKLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNLKHIDVRHHFIR 294
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE) HSP 1 Score: 194 bits (494), Expect = 8.470e-58 Identity = 110/251 (43.82%), Postives = 151/251 (60.16%), Query Frame = 1
Query: 1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVK--KEAKIPAASGVLTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLV 744
GD +Y GC R+ R LK Q Y + + F V+ KE P L LS+ D + EE+ +P+RE +G+LMW AT TRP+IA A RA AR+C +P H +A + I Y++ T D GIT+G G GL ME + D+D+ + RRSVSG +M +G ISW SR Q+ T+EAEYV+LA+ +K+VLFLRQV FM P + + VFEDN+GAI+LA N ++ +KH DV+HH +
Sbjct: 8 GDLRWYSGCVYERDWDARILKISQQTYAQELGMDFGVEYGKEILFPVG---LKLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFI 249
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 201 bits (512), Expect = 2.480e-57 Identity = 113/250 (45.20%), Postives = 153/250 (61.20%), Query Frame = 1
Query: 1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVKKEAKIPAASGVLTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR 747
GD +Y GC R+ LK Q Y E + F V+ +IP G L LS+ D + EE+ +P+RE +G+LMW AT TRPDIA AVRA AR+C +P H +A + I Y++ T D GIT+ G GL ME + D+D+ + RRSVSG ++M G ISW SR Q+ T+EAEYV+LA+ +K+VLFLRQV FM P + + VFEDN+GAI+LA N ++ +KHIDV+HH +R
Sbjct: 327 GDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVG-LKLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIR 569
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE) HSP 1 Score: 197 bits (501), Expect = 2.970e-57 Identity = 111/250 (44.40%), Postives = 152/250 (60.80%), Query Frame = 1
Query: 1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVKKEAKIPAASGVLTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR 747
GD +Y GC R+ LK Q Y E + F V+ +IP G L LS+ D + EE+ +P+RE +G+LMW AT TRPDIA AVRA AR+C +P H +A + I Y++ T + GIT+ G GL ME + D+D+ + RRSVSG ++M G ISW SR Q+ T+EAEYV+LA+ +K+VLFLRQV FM P + + VFEDN+GAI+LA N ++ +KHI V+HH +R
Sbjct: 94 GDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVG-LKLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYVVRTSELGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIHVRHHFIR 336
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 194 bits (492), Expect = 1.160e-55 Identity = 107/250 (42.80%), Postives = 148/250 (59.20%), Query Frame = 1
Query: 1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVKKEAKIPAASGVLTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR 747
G+ +Y GC RN++T L Q + + + + V +P +SGV LS D + E FP+RE VG+LMW AT TRPDIA AVRA AR+C +P H A M I Y T +GI++ G G ++ Y D+DF + RRSVSG ++ GA+SW SR Q+ T+EAEYVAL + VK++LFLRQ+ FM P + + + VFEDN+GAI+LA N ++ +KHIDV+HH +R
Sbjct: 177 GELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLR 419
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 201 bits (512), Expect = 1.390e-55 Identity = 113/250 (45.20%), Postives = 153/250 (61.20%), Query Frame = 1
Query: 1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVKKEAKIPAASGVLTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR 747
GD +Y GC R+ LK Q Y E + F V+ +IP G L LS+ D + EE+ +P+RE +G+LMW AT TRPDIA AVRA AR+C +P H +A + I Y++ T D GIT+ G GL ME + D+D+ + RRSVSG ++M G ISW SR Q+ T+EAEYV+LA+ +K+VLFLRQV FM P + + VFEDN+GAI+LA N ++ +KHIDV+HH +R
Sbjct: 848 GDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVG-LKLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIR 1090
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6H5KLT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT9_9PHAE) HSP 1 Score: 188 bits (478), Expect = 3.180e-55 Identity = 107/251 (42.63%), Postives = 148/251 (58.96%), Query Frame = 1
Query: 1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVKKEAKIPAASGV-LTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR 747
G+ +Y GC RN++T L Q + + + + V +P +SGV L+ ADE + FP+RE VG+LMW AT TRPDIA AVRA AR+C +P H A M I T +GI++ G GL ++ Y D+DF + RRSVSG ++ GA+SW SR Q+ T+EAEYVAL + VK++LFLRQ+ FM P + + VFEDN+GAI+LA N ++ +KHIDV+HH +R
Sbjct: 41 GELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATD--------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPTLVHWNAAMDILGDARRTSHFGISFQRGTVEGLSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCNPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLR 283
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6A3GCN4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GCN4_9STRA) HSP 1 Score: 186 bits (471), Expect = 7.600e-54 Identity = 108/251 (43.03%), Postives = 157/251 (62.55%), Query Frame = 1
Query: 1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVK--KEAKIPAASGVLTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR 747
G A + +G I+ + + R L Q Y ES++++F + K P GV L+KADEPQ+ E+K +MK PYR VG+LM+ A TRPDI+ AV +RF ENPG H A +K+ YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +LML + W S Q+ A ++EAEY+AL++ VK+ +++R++ + + +VGA ++EDN+GA+ LA N RTKHID+++H +R
Sbjct: 76 GRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPYLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVHYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIR 323
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA) HSP 1 Score: 185 bits (469), Expect = 1.040e-53 Identity = 107/251 (42.63%), Postives = 157/251 (62.55%), Query Frame = 1
Query: 1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVK--KEAKIPAASGVLTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR 747
G A + +G I+ + + R L Y ES++++F + K P GV L+KADEPQ+ E+K +MK PYR VG+LM+ A TRPDI+ AV +RF ENPG H A +K+ +YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +LML + W S Q+ A ++EAEY+AL++ VK+ +++R++ + + +VGA ++EDN+GA+ LA N RTKHID+++H +R
Sbjct: 28 GRARFILGIEIDYDMERRTLGISHKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIR 275 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig120.1597.1 >prot_F-serratus_M_contig120.1597.1 ID=prot_F-serratus_M_contig120.1597.1|Name=mRNA_F-serratus_M_contig120.1597.1|organism=Fucus serratus male|type=polypeptide|length=243bp MGCHINRNRKTRELKFDQHLYVESMVRRFDVKKEAKIPAASGVLTLSKADback to top mRNA from alignment at F-serratus_M_contig120:729430..730176+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig120.1597.1 ID=mRNA_F-serratus_M_contig120.1597.1|Name=mRNA_F-serratus_M_contig120.1597.1|organism=Fucus serratus male|type=mRNA|length=747bp|location=Sequence derived from alignment at F-serratus_M_contig120:729430..730176+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig120:729430..730176+ >mRNA_F-serratus_M_contig120.1597.1 ID=mRNA_F-serratus_M_contig120.1597.1|Name=mRNA_F-serratus_M_contig120.1597.1|organism=Fucus serratus male|type=CDS|length=1458bp|location=Sequence derived from alignment at F-serratus_M_contig120:729430..730176+ (Fucus serratus male)back to top |