mRNA_F-serratus_M_contig120.1597.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig120.1597.1
Unique NamemRNA_F-serratus_M_contig120.1597.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 7.210e-59
Identity = 113/250 (45.20%), Postives = 153/250 (61.20%), Query Frame = 1
Query:    1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVKKEAKIPAASGVLTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR 747
            GD  +Y GC   R+     LK  Q  Y E +   F V+   +IP   G L LS+ D      + EE+  +P+RE +G+LMW AT TRPDIA AVRA AR+C +P   H +A + I  Y++ T D GIT+  G   GL ME + D+D+ +    RRSVSG ++M   G ISW SR Q+     T+EAEYV+LA+ +K+VLFLRQV  FM P   +  + VFEDN+GAI+LA N  ++  +KHIDV+HH +R
Sbjct:  153 GDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVG-LKLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIR 395          
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 9.310e-59
Identity = 112/250 (44.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query:    1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVKKEAKIPAASGVLTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR 747
            GD  +Y GC   R+     LK  Q  Y E +   F V+   +IP   G + LS+ D      + EE+  +P+RE +G+LMW AT TRPDIA AVRA AR+C +P   H +A + I  Y++ T D GIT+  G   GL ME + D+D+ +    RRSVSG ++M   G ISW SR Q+     T+EAEYV+LA+ +K+VLFLRQV  FM P   +  + VFEDN+GAI+LA N  ++   KHIDV+HH +R
Sbjct:   52 GDLIWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVG-MKLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNLKHIDVRHHFIR 294          
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 8.470e-58
Identity = 110/251 (43.82%), Postives = 151/251 (60.16%), Query Frame = 1
Query:    1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVK--KEAKIPAASGVLTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLV 744
            GD  +Y GC   R+   R LK  Q  Y + +   F V+  KE   P     L LS+ D      + EE+  +P+RE +G+LMW AT TRP+IA A RA AR+C +P   H +A + I  Y++ T D GIT+G G   GL ME + D+D+ +    RRSVSG  +M  +G ISW SR Q+     T+EAEYV+LA+ +K+VLFLRQV  FM P   +  + VFEDN+GAI+LA N  ++  +KH DV+HH +
Sbjct:    8 GDLRWYSGCVYERDWDARILKISQQTYAQELGMDFGVEYGKEILFPVG---LKLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFI 249          
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 2.480e-57
Identity = 113/250 (45.20%), Postives = 153/250 (61.20%), Query Frame = 1
Query:    1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVKKEAKIPAASGVLTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR 747
            GD  +Y GC   R+     LK  Q  Y E +   F V+   +IP   G L LS+ D      + EE+  +P+RE +G+LMW AT TRPDIA AVRA AR+C +P   H +A + I  Y++ T D GIT+  G   GL ME + D+D+ +    RRSVSG ++M   G ISW SR Q+     T+EAEYV+LA+ +K+VLFLRQV  FM P   +  + VFEDN+GAI+LA N  ++  +KHIDV+HH +R
Sbjct:  327 GDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVG-LKLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIR 569          
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 2.970e-57
Identity = 111/250 (44.40%), Postives = 152/250 (60.80%), Query Frame = 1
Query:    1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVKKEAKIPAASGVLTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR 747
            GD  +Y GC   R+     LK  Q  Y E +   F V+   +IP   G L LS+ D      + EE+  +P+RE +G+LMW AT TRPDIA AVRA AR+C +P   H +A + I  Y++ T + GIT+  G   GL ME + D+D+ +    RRSVSG ++M   G ISW SR Q+     T+EAEYV+LA+ +K+VLFLRQV  FM P   +  + VFEDN+GAI+LA N  ++  +KHI V+HH +R
Sbjct:   94 GDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVG-LKLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYVVRTSELGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIHVRHHFIR 336          
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 1.160e-55
Identity = 107/250 (42.80%), Postives = 148/250 (59.20%), Query Frame = 1
Query:    1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVKKEAKIPAASGVLTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR 747
            G+  +Y GC   RN++T  L   Q  + + +   + V     +P +SGV  LS  D  +   E      FP+RE VG+LMW AT TRPDIA AVRA AR+C +P   H  A M I  Y   T  +GI++  G   G  ++ Y D+DF +    RRSVSG ++    GA+SW SR Q+     T+EAEYVAL + VK++LFLRQ+  FM P + +  + VFEDN+GAI+LA N  ++  +KHIDV+HH +R
Sbjct:  177 GELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLR 419          
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 1.390e-55
Identity = 113/250 (45.20%), Postives = 153/250 (61.20%), Query Frame = 1
Query:    1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVKKEAKIPAASGVLTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR 747
            GD  +Y GC   R+     LK  Q  Y E +   F V+   +IP   G L LS+ D      + EE+  +P+RE +G+LMW AT TRPDIA AVRA AR+C +P   H +A + I  Y++ T D GIT+  G   GL ME + D+D+ +    RRSVSG ++M   G ISW SR Q+     T+EAEYV+LA+ +K+VLFLRQV  FM P   +  + VFEDN+GAI+LA N  ++  +KHIDV+HH +R
Sbjct:  848 GDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVG-LKLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIR 1090          
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6H5KLT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT9_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 3.180e-55
Identity = 107/251 (42.63%), Postives = 148/251 (58.96%), Query Frame = 1
Query:    1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVKKEAKIPAASGV-LTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR 747
            G+  +Y GC   RN++T  L   Q  + + +   + V     +P +SGV L+   ADE  +         FP+RE VG+LMW AT TRPDIA AVRA AR+C +P   H  A M I      T  +GI++  G   GL ++ Y D+DF +    RRSVSG ++    GA+SW SR Q+     T+EAEYVAL + VK++LFLRQ+  FM P + +    VFEDN+GAI+LA N  ++  +KHIDV+HH +R
Sbjct:   41 GELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATD--------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPTLVHWNAAMDILGDARRTSHFGISFQRGTVEGLSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCNPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLR 283          
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6A3GCN4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GCN4_9STRA)

HSP 1 Score: 186 bits (471), Expect = 7.600e-54
Identity = 108/251 (43.03%), Postives = 157/251 (62.55%), Query Frame = 1
Query:    1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVK--KEAKIPAASGVLTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR 747
            G A + +G  I+ + + R L   Q  Y ES++++F  +  K    P   GV  L+KADEPQ+ E+K +MK  PYR  VG+LM+ A  TRPDI+ AV   +RF ENPG  H  A +K+  YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML    + W S  Q+  A  ++EAEY+AL++ VK+ +++R++ + +    +VGA  ++EDN+GA+ LA N     RTKHID+++H +R
Sbjct:   76 GRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPYLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVHYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIR 323          
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.040e-53
Identity = 107/251 (42.63%), Postives = 157/251 (62.55%), Query Frame = 1
Query:    1 GDAEYYMGCHINRNRKTRELKFDQHLYVESMVRRFDVK--KEAKIPAASGVLTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR 747
            G A + +G  I+ + + R L      Y ES++++F  +  K    P   GV  L+KADEPQ+ E+K +MK  PYR  VG+LM+ A  TRPDI+ AV   +RF ENPG  H  A +K+ +YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML    + W S  Q+  A  ++EAEY+AL++ VK+ +++R++ + +    +VGA  ++EDN+GA+ LA N     RTKHID+++H +R
Sbjct:   28 GRARFILGIEIDYDMERRTLGISHKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIR 275          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig120.1597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE7.210e-5945.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR24_9PHAE9.310e-5944.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD60_9PHAE8.470e-5843.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQB8_9PHAE2.480e-5745.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L0Z9_9PHAE2.970e-5744.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE1.160e-5542.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE1.390e-5545.20Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5KLT9_9PHAE3.180e-5542.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3GCN4_9STRA7.600e-5443.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3GI70_9STRA1.040e-5342.63Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig120contigF-serratus_M_contig120:729430..730176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue2.2e-43
Seed eggNOG ortholog67593.Physo139221
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size747
Cds size729
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929116.2485154-UTR-F-serratus_M_contig120:729429..7294471622929116.2485154-UTR-F-serratus_M_contig120:729429..729447Fucus serratus maleUTRF-serratus_M_contig120 729430..729447 +
1690962712.2900343-UTR-F-serratus_M_contig120:729429..7294471690962712.2900343-UTR-F-serratus_M_contig120:729429..729447Fucus serratus maleUTRF-serratus_M_contig120 729430..729447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929116.2618382-CDS-F-serratus_M_contig120:729447..7301761622929116.2618382-CDS-F-serratus_M_contig120:729447..730176Fucus serratus maleCDSF-serratus_M_contig120 729448..730176 +
1690962712.300217-CDS-F-serratus_M_contig120:729447..7301761690962712.300217-CDS-F-serratus_M_contig120:729447..730176Fucus serratus maleCDSF-serratus_M_contig120 729448..730176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig120.1597.1prot_F-serratus_M_contig120.1597.1Fucus serratus malepolypeptideF-serratus_M_contig120 729448..730176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig120.1597.1

>prot_F-serratus_M_contig120.1597.1 ID=prot_F-serratus_M_contig120.1597.1|Name=mRNA_F-serratus_M_contig120.1597.1|organism=Fucus serratus male|type=polypeptide|length=243bp
MGCHINRNRKTRELKFDQHLYVESMVRRFDVKKEAKIPAASGVLTLSKAD
EPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAAARFCENPGP
AHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSV
SGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEF
MEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVR
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mRNA from alignment at F-serratus_M_contig120:729430..730176+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig120.1597.1 ID=mRNA_F-serratus_M_contig120.1597.1|Name=mRNA_F-serratus_M_contig120.1597.1|organism=Fucus serratus male|type=mRNA|length=747bp|location=Sequence derived from alignment at F-serratus_M_contig120:729430..730176+ (Fucus serratus male)
GGGGACGCCGAATACTACATGGGTTGTCACATCAACCGGAACCGCAAGAC ACGTGAGTTGAAGTTCGACCAACACCTGTACGTGGAGTCAATGGTAAGGA GATTCGATGTCAAGAAGGAAGCCAAGATACCGGCTGCGTCGGGGGTGCTG ACACTCTCAAAGGCGGATGAGCCGCAAAGCCCAGAGGAAAAGGAAGAGAT GAAGATGTTCCCGTACCGAGAGGCAGTGGGGGCGCTCATGTGGACGGCGA CGATGACACGGCCGGATATCGCGTGCGCCGTACGCGCTGCGGCCAGGTTC TGCGAAAACCCCGGGCCAGCGCACAAGAAGGCAGTGATGAAGATCTTCCA GTATCTCCTTCACACGAAAGATTGGGGAATTACGTATGGTGGACAGGGCT GTGGACTCTGCATGGAAGCGTATACGGATTCGGATTTCGGAGCCTGCCTG GACACAAGACGATCGGTTTCAGGTGCGGTGTTGATGTTGGCCAAGGGGGC GATTAGTTGGCACTCTAGAATGCAAGAGGTAACGGCAGCAGGTACCTCGG AGGCTGAGTACGTTGCCTTAGCGGAGGCAGTCAAGGATGTACTGTTTTTG AGACAGGTGCAGGAGTTCATGGAACCGTCAATGAGGGTCGGTGCGGTAAA TGTGTTTGAAGACAATGAGGGGGCCATTAAGCTGGCCACAAACAAGCATG CTAGCCGTAGGACTAAGCACATTGATGTGAAGCATCACCTAGTGAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig120:729430..730176+

>mRNA_F-serratus_M_contig120.1597.1 ID=mRNA_F-serratus_M_contig120.1597.1|Name=mRNA_F-serratus_M_contig120.1597.1|organism=Fucus serratus male|type=CDS|length=1458bp|location=Sequence derived from alignment at F-serratus_M_contig120:729430..730176+ (Fucus serratus male)
ATGGGTTGTCACATCAACCGGAACCGCAAGACACGTGAGTTGAAGTTCGA
CCAACACCTGTACGTGGAGTCAATGGTAAGGAGATTCGATGTCAAGAAGG
AAGCCAAGATACCGGCTGCGTCGGGGGTGCTGACACTCTCAAAGGCGGAT
GAGCCGCAAAGCCCAGAGGAAAAGGAAGAGATGAAGATGTTCCCGTACCG
AGAGGCAGTGGGGGCGCTCATGTGGACGGCGACGATGACACGGCCGGATA
TCGCGTGCGCCGTACGCGCTGCGGCCAGGTTCTGCGAAAACCCCGGGCCA
GCGCACAAGAAGGCAGTGATGAAGATCTTCCAGTATCTCCTTCACACGAA
AGATTGGGGAATTACGTATGGTGGACAGGGCTGTGGACTCTGCATGGAAG
CGTATACGGATTCGGATTTCGGAGCCTGCCTGGACACAAGACGATCGGTT
TCAGGTGCGGTGTTGATGTTGGCCAAGGGGGCGATTAGTTGGCACTCTAG
AATGCAAGAGGTAACGGCAGCAGGTACCTCGGAGGCTGAGTACGTTGCCT
TAGCGGAGGCAGTCAAGGATGTACTGTTTTTGAGACAGGTGCAGGAGTTC
ATGGAACCGTCAATGAGGGTCGGTGCGGTAAATGTGTTTGAAGACAATGA
GGGGGCCATTAAGCTGGCCACAAACAAGCATGCTAGCCGTAGGACTAAGC
ACATTGATGTGAAGCATCACCTAGTGAGGATGGGTTGTCACATCAACCGG
AACCGCAAGACACGTGAGTTGAAGTTCGACCAACACCTGTACGTGGAGTC
AATGGTAAGGAGATTCGATGTCAAGAAGGAAGCCAAGATACCGGCTGCGT
CGGGGGTGCTGACACTCTCAAAGGCGGATGAGCCGCAAAGCCCAGAGGAA
AAGGAAGAGATGAAGATGTTCCCGTACCGAGAGGCAGTGGGGGCGCTCAT
GTGGACGGCGACGATGACACGGCCGGATATCGCGTGCGCCGTACGCGCTG
CGGCCAGGTTCTGCGAAAACCCCGGGCCAGCGCACAAGAAGGCAGTGATG
AAGATCTTCCAGTATCTCCTTCACACGAAAGATTGGGGAATTACGTATGG
TGGACAGGGCTGTGGACTCTGCATGGAAGCGTATACGGATTCGGATTTCG
GAGCCTGCCTGGACACAAGACGATCGGTTTCAGGTGCGGTGTTGATGTTG
GCCAAGGGGGCGATTAGTTGGCACTCTAGAATGCAAGAGGTAACGGCAGC
AGGTACCTCGGAGGCTGAGTACGTTGCCTTAGCGGAGGCAGTCAAGGATG
TACTGTTTTTGAGACAGGTGCAGGAGTTCATGGAACCGTCAATGAGGGTC
GGTGCGGTAAATGTGTTTGAAGACAATGAGGGGGCCATTAAGCTGGCCAC
AAACAAGCATGCTAGCCGTAGGACTAAGCACATTGATGTGAAGCATCACC
TAGTGAGG
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