mRNA_F-serratus_M_contig1102.965.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: A0A392PD17_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Trifolium TaxID=3898 RepID=A0A392PD17_9FABA) HSP 1 Score: 84.0 bits (206), Expect = 2.220e-17 Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = 1
Query: 1 IYKRKMK-DGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEFQEF-PGAVGRLNKAIYGLVQAGR 318
+YK K DG +E + +L G QVEG+ Y E ++P V++R++LA AAAK E+ D AFL D+ EE+ ++ P F+ F PG V +L K++YGL QA R
Sbjct: 21 VYKIKHNSDGTIERYKARLVIFGNHQVEGIDYNETFAPVAKMVTVRLVLAVAAAKKWEIHQMDVHNAFLHGDLHEEVYMKPPPGFRTFQPGLVCKLKKSLYGLKQAPR 128
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: A0A443QGC7_9ACAR (Gag-pol polyprotein-like protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A443QGC7_9ACAR) HSP 1 Score: 85.5 bits (210), Expect = 3.430e-17 Identity = 44/107 (41.12%), Postives = 68/107 (63.55%), Query Frame = 1
Query: 1 IYKRKMK-DGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEFQEFPGAVGRLNKAIYGLVQAGR 318
++K K K GE+E + +L +G Q+EG+ YTE +SP S+R+LL+ AA+ + E+ FD + AFL D+DEEI ++ PE + + V +L K++YGL QA R
Sbjct: 822 VFKVKTKPSGEIERYKARLVIKGCSQIEGIDYTETFSPVVKYTSLRVLLSIAASNNLEICQFDIKTAFLNGDLDEEIFMDQPEGYNDGSSHVCKLTKSLYGLKQAPR 928
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: A0A5H2XTU8_PRUDU (RmlC-like cupins superfamily protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XTU8_PRUDU) HSP 1 Score: 85.1 bits (209), Expect = 4.480e-17 Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1
Query: 1 IYK-RKMKDGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEFQ-EFPGAVGRLNKAIYGLVQAGR 318
+YK ++ DG +E + +L A+G+ Q+EG+ Y + +SPT +++R LLA AAA+D L D AFL D+ EEI + P Q + V RLNK++YGL QA R
Sbjct: 177 VYKIKRHSDGTIERYKARLVAKGYKQLEGIDYHDTFSPTAKMITVRCLLALAAAQDWSLHQLDVNNAFLHGDLHEEIYMSPPPGLQRQGENLVCRLNKSLYGLKQASR 284
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: A0A392MI34_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MI34_9FABA) HSP 1 Score: 84.7 bits (208), Expect = 5.760e-17 Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1
Query: 1 IYKRKMK-DGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEFQ-EFPGAVGRLNKAIYGLVQAGR 318
+YK K K DG +E + +L G QVEG+ YTE ++P V++R++LA AAA++ EL D AFL D+ EE+ +++P F P V +L K++YGL QA R
Sbjct: 220 VYKIKRKSDGTIERFKARLVILGNHQVEGIDYTETFAPVAKMVTVRVVLAVAAARNWELHQMDVHNAFLHGDLQEEVFMKLPPGFNVSSPEMVCKLRKSLYGLKQAPR 327
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: A0A5H2XSA6_PRUDU (RmlC-like cupins superfamily protein n=2 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XSA6_PRUDU) HSP 1 Score: 82.4 bits (202), Expect = 2.390e-16 Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 1
Query: 1 IYKRKMK-DGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEFQ-EFPGAVGRLNKAIYGLVQAGR 318
+YK K + DG +E + +L A+G+ Q EG+ Y E +SPT V++R LLA AAA+ L D + AFL +DEE+ + P F+ + V RLNK++YGL QA R
Sbjct: 53 VYKIKHRSDGTIERYKARLVAKGYTQQEGLDYHETFSPTAKLVTVRCLLAIAAARHWPLHQLDVQNAFLHGHLDEEVYMLPPPGFRRQGENLVCRLNKSLYGLKQASR 160
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: L8H8A7_ACACA (GagPol, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8A7_ACACA) HSP 1 Score: 80.1 bits (196), Expect = 4.430e-16 Identity = 43/107 (40.19%), Postives = 68/107 (63.55%), Query Frame = 1
Query: 1 IYKRKMK-DGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEF--QEFPGAVGRLNKAIYGLVQA 312
++K K K DG +++ + Q A+G+ Q+ GV + E ++P ++++LLA AAA + E+ D + AFL AD+ EEI ++ PE F Q+ P V RL K++YGL QA
Sbjct: 30 LFKLKRKADGSIDHFKAQWVAKGYLQLPGVDFNETFAPIIQLKNLQLLLAIAAALNLEVHQMDVDNAFLNADLSEEIYMQQPEGFEDQDHPDYVCRLQKSLYGLKQA 136
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: A0A438EDC4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EDC4_VITVI) HSP 1 Score: 81.6 bits (200), Expect = 7.400e-16 Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 1
Query: 1 IYK-RKMKDGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEFQ-EFPGAVGRLNKAIYGLVQAGR 318
+YK ++ DG +E + +L A+G+ Q+EG+ Y E +SPT +++R LLA AAA++ L+ D AFL D+ EEI + P + + V RL+K++YGL QA R
Sbjct: 478 VYKIKRHSDGTIELFKARLVAKGYTQLEGIDYHETFSPTAKMITVRCLLALAAAQNWSLQQLDVNNAFLHGDLHEEIYVSPPHGLRRQGENLVCRLHKSLYGLKQASR 585
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: A0A438JEG5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JEG5_VITVI) HSP 1 Score: 81.6 bits (200), Expect = 7.620e-16 Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 1
Query: 1 IYK-RKMKDGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEFQ-EFPGAVGRLNKAIYGLVQAGR 318
+YK ++ DG +E + +L A+G+ Q+EG+ Y E +SPT +++R LLA AAA++ L+ D AFL D+ EEI + P + + V RL+K++YGL QA R
Sbjct: 769 VYKIKRHSDGTIELFKARLVAKGYTQLEGIDYHETFSPTAKMITVRCLLALAAAQNWSLQQLDVNNAFLHGDLHEEIYVSPPHGLRRQRENLVCRLHKSLYGLKQASR 876
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: A5AWA1_VITVI (Integrase catalytic domain-containing protein n=7 Tax=Vitis vinifera TaxID=29760 RepID=A5AWA1_VITVI) HSP 1 Score: 81.6 bits (200), Expect = 7.730e-16 Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 1 IYKRKMK-DGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEF--QEFPGAVGRLNKAIYGLVQAGR 318
+YK K + DG +E + +L A+GF Q+EGV Y + +SPT +S+R LLA AAA+ + D AFL D+ EEI + P Q V RL+K++YGL QA R
Sbjct: 1035 VYKIKHRSDGSIERYKARLVAKGFTQLEGVDYQDTFSPTAKIISVRCLLALAAARGXSIHQMDVNNAFLHGDLHEEIYMSPPLGLRRQGEENLVCRLHKSLYGLKQASR 1143
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: A0A151TCZ4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TCZ4_CAJCA) HSP 1 Score: 81.3 bits (199), Expect = 1.010e-15 Identity = 44/108 (40.74%), Postives = 65/108 (60.19%), Query Frame = 1
Query: 1 IYKRKMK-DGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEFQ-EFPGAVGRLNKAIYGLVQAGR 318
+Y+ K DG +E + +L G QVEG+ Y E ++P V++R LLA AAA+ EL D AFL D++EE+ +++P F+ + G V RL K++YGL QA R
Sbjct: 435 VYRIKYNSDGSIERFKARLVILGNNQVEGLDYNETFAPVAKMVTVRTLLAVAAARKWELHQMDVHNAFLHGDLEEEVYMKLPPGFRSQASGKVCRLRKSLYGLKQAPR 542 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1102.965.1 >prot_F-serratus_M_contig1102.965.1 ID=prot_F-serratus_M_contig1102.965.1|Name=mRNA_F-serratus_M_contig1102.965.1|organism=Fucus serratus male|type=polypeptide|length=72bp MKDGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDback to top mRNA from alignment at F-serratus_M_contig1102:73146..73463- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1102.965.1 ID=mRNA_F-serratus_M_contig1102.965.1|Name=mRNA_F-serratus_M_contig1102.965.1|organism=Fucus serratus male|type=mRNA|length=318bp|location=Sequence derived from alignment at F-serratus_M_contig1102:73146..73463- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1102:73146..73463- >mRNA_F-serratus_M_contig1102.965.1 ID=mRNA_F-serratus_M_contig1102.965.1|Name=mRNA_F-serratus_M_contig1102.965.1|organism=Fucus serratus male|type=CDS|length=432bp|location=Sequence derived from alignment at F-serratus_M_contig1102:73146..73463- (Fucus serratus male)back to top |