mRNA_F-serratus_M_contig1102.965.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1102.965.1
Unique NamemRNA_F-serratus_M_contig1102.965.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: A0A392PD17_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Trifolium TaxID=3898 RepID=A0A392PD17_9FABA)

HSP 1 Score: 84.0 bits (206), Expect = 2.220e-17
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    1 IYKRKMK-DGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEFQEF-PGAVGRLNKAIYGLVQAGR 318
            +YK K   DG +E  + +L   G  QVEG+ Y E ++P    V++R++LA AAAK  E+   D   AFL  D+ EE+ ++ P  F+ F PG V +L K++YGL QA R
Sbjct:   21 VYKIKHNSDGTIERYKARLVIFGNHQVEGIDYNETFAPVAKMVTVRLVLAVAAAKKWEIHQMDVHNAFLHGDLHEEVYMKPPPGFRTFQPGLVCKLKKSLYGLKQAPR 128          
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: A0A443QGC7_9ACAR (Gag-pol polyprotein-like protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A443QGC7_9ACAR)

HSP 1 Score: 85.5 bits (210), Expect = 3.430e-17
Identity = 44/107 (41.12%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 IYKRKMK-DGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEFQEFPGAVGRLNKAIYGLVQAGR 318
            ++K K K  GE+E  + +L  +G  Q+EG+ YTE +SP     S+R+LL+ AA+ + E+  FD + AFL  D+DEEI ++ PE + +    V +L K++YGL QA R
Sbjct:  822 VFKVKTKPSGEIERYKARLVIKGCSQIEGIDYTETFSPVVKYTSLRVLLSIAASNNLEICQFDIKTAFLNGDLDEEIFMDQPEGYNDGSSHVCKLTKSLYGLKQAPR 928          
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: A0A5H2XTU8_PRUDU (RmlC-like cupins superfamily protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XTU8_PRUDU)

HSP 1 Score: 85.1 bits (209), Expect = 4.480e-17
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    1 IYK-RKMKDGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEFQ-EFPGAVGRLNKAIYGLVQAGR 318
            +YK ++  DG +E  + +L A+G+ Q+EG+ Y + +SPT   +++R LLA AAA+D  L   D   AFL  D+ EEI +  P   Q +    V RLNK++YGL QA R
Sbjct:  177 VYKIKRHSDGTIERYKARLVAKGYKQLEGIDYHDTFSPTAKMITVRCLLALAAAQDWSLHQLDVNNAFLHGDLHEEIYMSPPPGLQRQGENLVCRLNKSLYGLKQASR 284          
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: A0A392MI34_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MI34_9FABA)

HSP 1 Score: 84.7 bits (208), Expect = 5.760e-17
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    1 IYKRKMK-DGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEFQ-EFPGAVGRLNKAIYGLVQAGR 318
            +YK K K DG +E  + +L   G  QVEG+ YTE ++P    V++R++LA AAA++ EL   D   AFL  D+ EE+ +++P  F    P  V +L K++YGL QA R
Sbjct:  220 VYKIKRKSDGTIERFKARLVILGNHQVEGIDYTETFAPVAKMVTVRVVLAVAAARNWELHQMDVHNAFLHGDLQEEVFMKLPPGFNVSSPEMVCKLRKSLYGLKQAPR 327          
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: A0A5H2XSA6_PRUDU (RmlC-like cupins superfamily protein n=2 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XSA6_PRUDU)

HSP 1 Score: 82.4 bits (202), Expect = 2.390e-16
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    1 IYKRKMK-DGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEFQ-EFPGAVGRLNKAIYGLVQAGR 318
            +YK K + DG +E  + +L A+G+ Q EG+ Y E +SPT   V++R LLA AAA+   L   D + AFL   +DEE+ +  P  F+ +    V RLNK++YGL QA R
Sbjct:   53 VYKIKHRSDGTIERYKARLVAKGYTQQEGLDYHETFSPTAKLVTVRCLLAIAAARHWPLHQLDVQNAFLHGHLDEEVYMLPPPGFRRQGENLVCRLNKSLYGLKQASR 160          
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: L8H8A7_ACACA (GagPol, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8A7_ACACA)

HSP 1 Score: 80.1 bits (196), Expect = 4.430e-16
Identity = 43/107 (40.19%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 IYKRKMK-DGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEF--QEFPGAVGRLNKAIYGLVQA 312
            ++K K K DG +++ + Q  A+G+ Q+ GV + E ++P     ++++LLA AAA + E+   D + AFL AD+ EEI ++ PE F  Q+ P  V RL K++YGL QA
Sbjct:   30 LFKLKRKADGSIDHFKAQWVAKGYLQLPGVDFNETFAPIIQLKNLQLLLAIAAALNLEVHQMDVDNAFLNADLSEEIYMQQPEGFEDQDHPDYVCRLQKSLYGLKQA 136          
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: A0A438EDC4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EDC4_VITVI)

HSP 1 Score: 81.6 bits (200), Expect = 7.400e-16
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    1 IYK-RKMKDGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEFQ-EFPGAVGRLNKAIYGLVQAGR 318
            +YK ++  DG +E  + +L A+G+ Q+EG+ Y E +SPT   +++R LLA AAA++  L+  D   AFL  D+ EEI +  P   + +    V RL+K++YGL QA R
Sbjct:  478 VYKIKRHSDGTIELFKARLVAKGYTQLEGIDYHETFSPTAKMITVRCLLALAAAQNWSLQQLDVNNAFLHGDLHEEIYVSPPHGLRRQGENLVCRLHKSLYGLKQASR 585          
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: A0A438JEG5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JEG5_VITVI)

HSP 1 Score: 81.6 bits (200), Expect = 7.620e-16
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    1 IYK-RKMKDGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEFQ-EFPGAVGRLNKAIYGLVQAGR 318
            +YK ++  DG +E  + +L A+G+ Q+EG+ Y E +SPT   +++R LLA AAA++  L+  D   AFL  D+ EEI +  P   + +    V RL+K++YGL QA R
Sbjct:  769 VYKIKRHSDGTIELFKARLVAKGYTQLEGIDYHETFSPTAKMITVRCLLALAAAQNWSLQQLDVNNAFLHGDLHEEIYVSPPHGLRRQRENLVCRLHKSLYGLKQASR 876          
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: A5AWA1_VITVI (Integrase catalytic domain-containing protein n=7 Tax=Vitis vinifera TaxID=29760 RepID=A5AWA1_VITVI)

HSP 1 Score: 81.6 bits (200), Expect = 7.730e-16
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    1 IYKRKMK-DGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEF--QEFPGAVGRLNKAIYGLVQAGR 318
            +YK K + DG +E  + +L A+GF Q+EGV Y + +SPT   +S+R LLA AAA+   +   D   AFL  D+ EEI +  P     Q     V RL+K++YGL QA R
Sbjct: 1035 VYKIKHRSDGSIERYKARLVAKGFTQLEGVDYQDTFSPTAKIISVRCLLALAAARGXSIHQMDVNNAFLHGDLHEEIYMSPPLGLRRQGEENLVCRLHKSLYGLKQASR 1143          
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Match: A0A151TCZ4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TCZ4_CAJCA)

HSP 1 Score: 81.3 bits (199), Expect = 1.010e-15
Identity = 44/108 (40.74%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    1 IYKRKMK-DGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKDGELRHFDAEQAFLKADIDEEI*IEIPEEFQ-EFPGAVGRLNKAIYGLVQAGR 318
            +Y+ K   DG +E  + +L   G  QVEG+ Y E ++P    V++R LLA AAA+  EL   D   AFL  D++EE+ +++P  F+ +  G V RL K++YGL QA R
Sbjct:  435 VYRIKYNSDGSIERFKARLVILGNNQVEGLDYNETFAPVAKMVTVRTLLAVAAARKWELHQMDVHNAFLHGDLEEEVYMKLPPGFRSQASGKVCRLRKSLYGLKQAPR 542          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1102.965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A392PD17_9FABA2.220e-1741.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A443QGC7_9ACAR3.430e-1741.12Gag-pol polyprotein-like protein n=1 Tax=Dinothrom... [more]
A0A5H2XTU8_PRUDU4.480e-1741.67RmlC-like cupins superfamily protein n=1 Tax=Prunu... [more]
A0A392MI34_9FABA5.760e-1741.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5H2XSA6_PRUDU2.390e-1642.59RmlC-like cupins superfamily protein n=2 Tax=Prunu... [more]
L8H8A7_ACACA4.430e-1640.19GagPol, putative n=1 Tax=Acanthamoeba castellanii ... [more]
A0A438EDC4_VITVI7.400e-1639.81Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JEG5_VITVI7.620e-1639.81Retrovirus-related Pol polyprotein from transposon... [more]
A5AWA1_VITVI7.730e-1642.20Integrase catalytic domain-containing protein n=7 ... [more]
A0A151TCZ4_CAJCA1.010e-1540.74Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1102contigF-serratus_M_contig1102:73146..73463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.1
Seed ortholog evalue1.5e-08
Seed eggNOG ortholog15368.BRADI3G58223.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37V5Q@33090,3GFFK@35493,3IKJW@38820,3M7B5@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size318
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1102.965.1prot_F-serratus_M_contig1102.965.1Fucus serratus malepolypeptideF-serratus_M_contig1102 73233..73448 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928972.7502687-UTR-F-serratus_M_contig1102:73145..732321622928972.7502687-UTR-F-serratus_M_contig1102:73145..73232Fucus serratus maleUTRF-serratus_M_contig1102 73146..73232 -
1690962652.7698052-UTR-F-serratus_M_contig1102:73145..732321690962652.7698052-UTR-F-serratus_M_contig1102:73145..73232Fucus serratus maleUTRF-serratus_M_contig1102 73146..73232 -
1622928972.7730248-UTR-F-serratus_M_contig1102:73448..734631622928972.7730248-UTR-F-serratus_M_contig1102:73448..73463Fucus serratus maleUTRF-serratus_M_contig1102 73449..73463 -
1690962652.7970195-UTR-F-serratus_M_contig1102:73448..734631690962652.7970195-UTR-F-serratus_M_contig1102:73448..73463Fucus serratus maleUTRF-serratus_M_contig1102 73449..73463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928972.7640045-CDS-F-serratus_M_contig1102:73232..734481622928972.7640045-CDS-F-serratus_M_contig1102:73232..73448Fucus serratus maleCDSF-serratus_M_contig1102 73233..73448 -
1690962652.7826724-CDS-F-serratus_M_contig1102:73232..734481690962652.7826724-CDS-F-serratus_M_contig1102:73232..73448Fucus serratus maleCDSF-serratus_M_contig1102 73233..73448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1102.965.1

>prot_F-serratus_M_contig1102.965.1 ID=prot_F-serratus_M_contig1102.965.1|Name=mRNA_F-serratus_M_contig1102.965.1|organism=Fucus serratus male|type=polypeptide|length=72bp
MKDGEVENCRCQLTAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAAKD
GELRHFDAEQAFLKADIDEEI*
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mRNA from alignment at F-serratus_M_contig1102:73146..73463-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1102.965.1 ID=mRNA_F-serratus_M_contig1102.965.1|Name=mRNA_F-serratus_M_contig1102.965.1|organism=Fucus serratus male|type=mRNA|length=318bp|location=Sequence derived from alignment at F-serratus_M_contig1102:73146..73463- (Fucus serratus male)
ATTTACAAGAGAAAGATGAAGGACGGCGAGGTCGAGAACTGTCGCTGTCA GCTTACCGCTCAAGGGTTCTGGCAGGTGGAAGGTGTGCACTACACGGAAA AGTACTCGCCCACGCCATCAGCTGTGTCAATCCGGATGCTTTTGGCGACG GCAGCAGCCAAGGATGGGGAGCTGCGCCATTTCGACGCAGAGCAGGCGTT TTTGAAGGCGGATATTGACGAGGAGATATAAATAGAGATCCCCGAGGAGT TCCAGGAGTTTCCGGGGGCAGTGGGACGGCTTAATAAAGCCATTTACGGA CTCGTGCAGGCGGGGAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1102:73146..73463-

>mRNA_F-serratus_M_contig1102.965.1 ID=mRNA_F-serratus_M_contig1102.965.1|Name=mRNA_F-serratus_M_contig1102.965.1|organism=Fucus serratus male|type=CDS|length=432bp|location=Sequence derived from alignment at F-serratus_M_contig1102:73146..73463- (Fucus serratus male)
ATGAAGGACGGCGAGGTCGAGAACTGTCGCTGTCAGCTTACCGCTCAAGG
GTTCTGGCAGGTGGAAGGTGTGCACTACACGGAAAAGTACTCGCCCACGC
CATCAGCTGTGTCAATCCGGATGCTTTTGGCGACGGCAGCAGCCAAGGAT
GGGGAGCTGCGCCATTTCGACGCAGAGCAGGCGTTTTTGAAGGCGGATAT
TGACGAGGAGATATAAATGAAGGACGGCGAGGTCGAGAACTGTCGCTGTC
AGCTTACCGCTCAAGGGTTCTGGCAGGTGGAAGGTGTGCACTACACGGAA
AAGTACTCGCCCACGCCATCAGCTGTGTCAATCCGGATGCTTTTGGCGAC
GGCAGCAGCCAAGGATGGGGAGCTGCGCCATTTCGACGCAGAGCAGGCGT
TTTTGAAGGCGGATATTGACGAGGAGATATAA
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