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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 227086.JGI_V11_82345 |
| ProteomeId | EsuBft321_6 |
| Protein domains | IPR007695 |
| Protein domains | PTHR11361 |
| Protein domains | IPR016151 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | dna mismatch repair protein mitochondrial os:arabidopsis thaliana gn:msh1 pe:1 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1728 |
| Hectar predicted targeting category | other localisation |
| Evalue | 6.01e-29 |
| EggNOG OGs | COG0249@1|root,KOG0217@2759|Eukaryota |
| Ec32 ortholog description | AP2/ERF domain protein |
| Ec32 ortholog | Ec-01_004370.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | MSH6 |
| KEGG ko | ko:K08737 |
| KEGG Pathway | ko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210 |
| KEGG Module | M00295 |
| GOs | GO:0000003,GO:0000166,GO:0000217,GO:0000400,GO:0000403,GO:0000404,GO:0000406,GO:0000710,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0030554,GO:0030983,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032135,GO:0032137,GO:0032300,GO:0032301,GO:0032302,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036297,GO:0042623,GO:0043111,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045005,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051716,GO:0060255,GO:0061982,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1903046,GO:1990391,GO:2000104,GO:2000112,GO:2000113 |
| Description | mismatched DNA binding |
| COG category | L |
| BRITE | ko00000,ko00001,ko00002,ko03400 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0019219 |
| GO | 2000112 |
| GO | 0051276 |
| GO | 0030983 |
| GO | 0009507 |
| GO | 0009408 |
| GO | 0005524 |
| GO | 0005515 |
| GO | 1902589 |
| GO | 0006298 |
| GO | 0005739 |
| GO | 0032042 |
| GO | 0043412 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft321_6a-0001 ID=EsuBft321_6a-0001|Name=EsuBft321_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1728bp|location=Sequence derived from alignment at Scaffold_235:74576..77606- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCAGTTATCGAAGAAGAAGCAGCGCAGGCAACGGCCAAGGTAGCGGC
GGAGGCAGTGACACAACCAACTCGAGGGGCAGAGAGCCGTGGGGGGAAGG
GGATAGTCTCCGAGAACCCTCTCTCCGGTGCTACCGCCAAAAGCAGGAAG
GAGAAGGCTAAGAACGGCGAGGGTGTCACGGGCGCTCCCGAGGGAGGAGA
GGAAATCCCCGCCGCTGCAGCCGTCGCGCAAGCGAAGGCAGCAGCAGACA
CGGCGGGGGTGGCGGAAGCGGCCCCCCGTGCTGCCGCCGCCACCGCGGAC
TTCCGCTACCAGGACGAGCTCGATTTTCGGGACCTGGAGGAGATCCCAGA
AAGCACGGGGCCGTCCTTCTGGGGGGACGACGACGACGCCACGCTGGCAT
CGACGTGGGCAACAACGGCCGAGCGACAAGGAGGCGGCGGTGATGATGAT
GGTGGCAAGGCTGCTGCTGCTCTTGTCAAAGAGGGGAGCAGTAGGAGCAG
CAGCAGCAGCAGCAGCAGCGTCGCCACAACAGCCCCGACCGTTCCTTATC
GTGGCCGGGCTGTCGGCGAGTCGAGCCCTCCGAAGTACACCGGGCTTGCA
GAAGGAGGACCGGGTGCAGACGTGACAGCGGGAGCAGCGGGAGGGGAATC
GGAGCCCGGTCCTGGCAACGGCATCCCTCCGGGGAACGACGAGAGCGCAC
TGGTGGTCCCCTCACCAACTTCCGCACCAGCTGCTAGCGGCAGTAGCACC
ACCACCACGATCAAGATGTCGCGTGCGGCGGCGGGGATGGCTTCCGTCGG
GGGCGAGGCCAAGGCAGGAGTTGCTGGCCGTCGGAGGCGTCGTTCGTTGT
CGACCTTAGCATCGTCGCAGCAGGCGAAGTCATCGCCACCGCCTCCACCA
CCTGCCTCTGCCGCGGTCGGCACCGGCACCTCGAGCTCAAACCCACCAGT
AGCAGCGCCGCCACTACCGCCAAGCCACGTGGCTGCCGAACGCGTAGAGG
GGGGCGCAAGCGTTGCCGCTGATGTCGCTGCCATGCCCAGCAAGGCGGCC
TCAGAAGGGCCGCCATTGGCGCTGGCGTCACCGGAGACGGCGGGCGGGGC
GGCAGCGGGGTTGGACGGTTCTGGTCAGCGGGAGGGGGGAGAAGCGAACG
GCATGGGTGGGGGAGAGGGCTGGAGCGGGGAGGGGGGCGGAGCAGAGACG
ACGGGAGCGTGGTCCGGGGGGGGGGCAAGGTGGGAGAGGGATGAGGCCGA
AGAAGACGTGTACGAGGAGAATCTCAAGGCCCTGGTCGGCGTCAGCACCG
GGCCTCACGACTACTGGATGGGGCCGCTGATGGCGTTGACCAAGCCGGAG
ACGAGGAAGACGGCCATGCAGCTCACCGCCGACAACAAGCTCGGCTACCG
CTCGTCCAAGGGGGGTCCGGTCAGCAAGGGGACTCTGTTGCAGTACGTCC
TCGAGCAGAAGGAGAAGCACCCCACGAAGGTACTGCTTACGCGGGTGGGG
GAGTTCTACGAGACCTACGGCGTGGACGCGGTGATGATGATGCAGCACGC
CGGCCTCAACAAGATGGGGCAAGAAATCAGGGCCGGGTGCCCCCGAAGGA
ACGTGCAACAAACCATCGACGGCCTCACGGGCGCGGGTCTCACTGTGGCG
GTCTACGAAGAGGCGAGAATCGGGGAGGGGGGGGGGGGGGGGGGCGTACT
CTTATGTTTTGCATGTCTTAGCGGTTAG back to topprotein sequence of EsuBft321_6a-0001 >EsuBft321_6 ID=EsuBft321_6|Name=EsuBft321_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=575bp
MAVIEEEAAQATAKVAAEAVTQPTRGAESRGGKGIVSENPLSGATAKSRK
EKAKNGEGVTGAPEGGEEIPAAAAVAQAKAAADTAGVAEAAPRAAAATAD
FRYQDELDFRDLEEIPESTGPSFWGDDDDATLASTWATTAERQGGGGDDD
GGKAAAALVKEGSSRSSSSSSSSVATTAPTVPYRGRAVGESSPPKYTGLA
EGGPGADVTAGAAGGESEPGPGNGIPPGNDESALVVPSPTSAPAASGSST
TTTIKMSRAAAGMASVGGEAKAGVAGRRRRRSLSTLASSQQAKSSPPPPP
PASAAVGTGTSSSNPPVAAPPLPPSHVAAERVEGGASVAADVAAMPSKAA
SEGPPLALASPETAGGAAAGLDGSGQREGGEANGMGGGEGWSGEGGGAET
TGAWSGGGARWERDEAEEDVYEENLKALVGVSTGPHDYWMGPLMALTKPE
TRKTAMQLTADNKLGYRSSKGGPVSKGTLLQYVLEQKEKHPTKVLLTRVG
EFYETYGVDAVMMMQHAGLNKMGQEIRAGCPRRNVQQTIDGLTGAGLTVA
VYEEARIGEGGGGGGVLLCFACLSG back to topmRNA from alignment at Scaffold_235:74576..77606- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft321_6a-0001 ID=EsuBft321_6a-0001|Name=EsuBft321_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3031bp|location=Sequence derived from alignment at Scaffold_235:74576..77606- (Ectocarpus subulatus male Bft15b)
ATGGCAGTTATCGAAGAAGAAGCAGCGCAGGCAACGGCCAAGGTAGCGGC
GGAGGCAGTGACACAACCAACTCGAGGGGCAGAGAGCCGTGGGGGGAAGG
GGATAGTCTCCGAGAACCCTCTCTCCGGTGCTACCGCCAAAAGCAGGAAG
GAGAAGGCTAAGAACGGCGAGGGTGTCACGGGCGCTCCCGAGGGAGGAGA
GGAAATCCCCGCCGCTGCAGCCGTCGCGCAAGCGAAGGCAGCAGCAGACA
CGGCGGGGGTGGCGGAAGCGGCCCCCCGTGCTGCCGCCGCCACCGCGGAC
TTCCGCTACCAGGACGAGCTCGATTTTCGGGACCTGGAGGAGATCCCAGA
AAGCACGGGGCCGTCCTTCTGGGGGGACGACGACGACGCCACGCTGGCAT
CGACGTGGGCAACAACGGCCGAGCGACAAGGAGGCGGCGGTGATGATGAT
GGTGGCAAGGCTGCTGCTGCTCTTGTCAAAGAGGGGAGCAGTAGGAGCAG
CAGCAGCAGCAGCAGCAGCGTCGCCACAACAGCCCCGACCGTTCCTTATC
GTGGCCGGGCTGTCGGCGAGTCGAGCCCTCCGAAGTACACCGGGCTTGCA
GAAGGAGGACCGGGTGCAGACGTGACAGCGGGAGCAGCGGGAGGGGAATC
GGAGCCCGGTCCTGGCAACGGCATCCCTCCGGGGAACGACGAGAGCGCAC
TGGTGGTCCCCTCACCAACTTCCGCACCAGCTGCTAGCGGCAGTAGCACC
ACCACCACGATCAAGATGTCGCGTGCGGCGGCGGGGATGGCTTCCGTCGG
GGGCGAGGCCAAGGCAGGAGTTGCTGGCCGTCGGAGGCGTCGTTCGTTGT
CGACCTTAGCATCGTCGCAGCAGGCGAAGTCATCGCCACCGCCTCCACCA
CCTGCCTCTGCCGCGGTCGGCACCGGCACCTCGAGCTCAAACCCACCAGT
AGCAGCGCCGCCACTACCGCCAAGCCACGTGGCTGCCGAACGCGTAGAGG
GGGGCGCAAGCGTTGCCGCTGATGTCGCTGCCATGCCCAGCAAGGCGGCC
TCAGAAGGGCCGCCATTGGCGCTGGCGTCACCGGAGACGGCGGGCGGGGC
GGCAGCGGGGTTGGACGGTTCTGGTCAGCGGGAGGGGGGAGAAGCGAACG
GCATGGGTGGGGGAGAGGGCTGGAGCGGGGAGGGGGGCGGAGCAGAGACG
ACGGGAGCGTGGTCCGGGGGGGGGGCAAGGTGGGAGAGGGATGAGGCCGA
AGAAGACGTGTACGAGGAGAATCTCAAGGCCCTGGTCGGCGTCAGGTAAC
TGGGGGAAGCGGGGGACGGGTTCCCTCTTATTCTTGTTGCCCAAGACTAT
TGACACACTTGGCCACGCATCCCTTTGAAAAGTATCACTGCTCTTACATT
CGAAAGAAAAACCTGCTGTTTCCGACGCTGCGCACGCGTTTCCGCCAAGT
TCTACAACGCAACACGCTGTTTCGCTCGTCCGTTACTCCGGTGTTTGGTT
TCGTTGTTTGGCCACTACTTTTTTCCTGATGGTGCGCAGCGATCGCTGTC
TCCCTGTTTGCCGTGTTGTGAGGTACACGGGTTAAAGGTCGGGGAGATAC
AATGCAGTCACATATGGATGCAGTTTAAGGCATTTCACTTCTCCTTGTTG
GTCTTGGGCCGTGTTTCGTTAGCTTCGAGTGTTGAGTGTCGCCGTCGCCT
GCTTCTTCGCTGCCTTGGGCGCGTACGGGCATCACCTTGCTGTAGCAGTT
GGTTTCTCGCGCTGGGCCTCTCGACGACAGCCAAGGGACTTCCACGCACT
CCCCCTTTGAAAGGTCACTCGCTGCTCCCTTCCTTCCTGTCTGCCTGCCT
GTCTCCTGCCCTTCCGCGCACAGCCCGCCCGCTCTACTGCCCACCCACCA
CACCCTTGTCGGATCTTTATCCTTTCCCGATATTCGTTTCTCAGCCGCTT
CGTTTGTCCTTCGACGATTACAACGTACATCCCCTTGTTGATCCGTTCAC
CTTTCAACCTACTATTACCCACCCACCAACATGACGCCGCCGCTGGCGCC
GCGGCCGCCGCCGTCGCCTGGCACCGCCCGTCCGCGAGAGCAGCACCGGG
CCTCACGACTACTGGATGGGGCCGCTGATGGCGTTGACCAAGCCGGAGAC
GAGGAAGACGGCCATGCAGCTCACCGCCGACAACAAGCTCGGCTACCGCT
CGTCCAAGGGGGGTCCGGTCAGCAAGGGGACTCTGTTGCAGTACGTCCTC
GAGCAGAAGGAGAAGCACCCCACGAAGGTGATGGCGGGGGGTGCGGGGCG
GGTAGGCACGGGCGGTGGTTCAAGTAGCAACGCTCGTCCGGACGTTTTTT
CCTGAAACGTGCTGCTGCTGCTGCTGTGTTTTCGCCCTCCGTCCAAGCCC
AAGATTGCTGTCGATATCGTGGCCGTTTCCGAGTCTGAAAATAGCGGTCG
TGTAGCCACTCGTGCGAAAGAAAAAAGTAGCTCTTTCGCGATGTGGGCAC
GCGGTTTTGGCACGCGCGTAACGTGGGAGATGGTACCATGCGCGACGCAA
GCGTTTATCCGGTAGCTGCTACTACAGGCACCACGTCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTGGGTCGAGAAAGCAACGAGAATCGCACTC
ATCTCCCCCCTTCGAGACCCCCCCCCCCTCCCCCCTTACACGCATCCTTC
TACAAGAAACAAATCCCGGAACCAACACGCAGGTACTGCTTACGCGGGTG
GGGGAGTTCTACGAGACCTACGGCGTGGACGCGGTGATGATGATGCAGCA
CGCCGGCCTCAACAAGATGGGGCAAGAAATCAGGGCCGGGTGCCCCCGAA
GGAACGTGCAACAAACCATCGACGGCCTCACGGGCGCGGGTCTCACTGTG
GCGGTCTACGAAGAGGCGAGAATCGGGGAGGGGGGGGGGGGGGGGGGCGT
ACTCTTATGTTTTGCATGTCTTAGCGGTTAG back to topCoding sequence (CDS) from alignment at Scaffold_235:74576..77606- >EsuBft321_6a-0001 ID=EsuBft321_6a-0001|Name=EsuBft321_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1728bp|location=Sequence derived from alignment at Scaffold_235:74576..77606- (Ectocarpus subulatus male Bft15b)
ATGGCAGTTATCGAAGAAGAAGCAGCGCAGGCAACGGCCAAGGTAGCGGC
GGAGGCAGTGACACAACCAACTCGAGGGGCAGAGAGCCGTGGGGGGAAGG
GGATAGTCTCCGAGAACCCTCTCTCCGGTGCTACCGCCAAAAGCAGGAAG
GAGAAGGCTAAGAACGGCGAGGGTGTCACGGGCGCTCCCGAGGGAGGAGA
GGAAATCCCCGCCGCTGCAGCCGTCGCGCAAGCGAAGGCAGCAGCAGACA
CGGCGGGGGTGGCGGAAGCGGCCCCCCGTGCTGCCGCCGCCACCGCGGAC
TTCCGCTACCAGGACGAGCTCGATTTTCGGGACCTGGAGGAGATCCCAGA
AAGCACGGGGCCGTCCTTCTGGGGGGACGACGACGACGCCACGCTGGCAT
CGACGTGGGCAACAACGGCCGAGCGACAAGGAGGCGGCGGTGATGATGAT
GGTGGCAAGGCTGCTGCTGCTCTTGTCAAAGAGGGGAGCAGTAGGAGCAG
CAGCAGCAGCAGCAGCAGCGTCGCCACAACAGCCCCGACCGTTCCTTATC
GTGGCCGGGCTGTCGGCGAGTCGAGCCCTCCGAAGTACACCGGGCTTGCA
GAAGGAGGACCGGGTGCAGACGTGACAGCGGGAGCAGCGGGAGGGGAATC
GGAGCCCGGTCCTGGCAACGGCATCCCTCCGGGGAACGACGAGAGCGCAC
TGGTGGTCCCCTCACCAACTTCCGCACCAGCTGCTAGCGGCAGTAGCACC
ACCACCACGATCAAGATGTCGCGTGCGGCGGCGGGGATGGCTTCCGTCGG
GGGCGAGGCCAAGGCAGGAGTTGCTGGCCGTCGGAGGCGTCGTTCGTTGT
CGACCTTAGCATCGTCGCAGCAGGCGAAGTCATCGCCACCGCCTCCACCA
CCTGCCTCTGCCGCGGTCGGCACCGGCACCTCGAGCTCAAACCCACCAGT
AGCAGCGCCGCCACTACCGCCAAGCCACGTGGCTGCCGAACGCGTAGAGG
GGGGCGCAAGCGTTGCCGCTGATGTCGCTGCCATGCCCAGCAAGGCGGCC
TCAGAAGGGCCGCCATTGGCGCTGGCGTCACCGGAGACGGCGGGCGGGGC
GGCAGCGGGGTTGGACGGTTCTGGTCAGCGGGAGGGGGGAGAAGCGAACG
GCATGGGTGGGGGAGAGGGCTGGAGCGGGGAGGGGGGCGGAGCAGAGACG
ACGGGAGCGTGGTCCGGGGGGGGGGCAAGGTGGGAGAGGGATGAGGCCGA
AGAAGACGTGTACGAGGAGAATCTCAAGGCCCTGGTCGGCGTCAGCACCG
GGCCTCACGACTACTGGATGGGGCCGCTGATGGCGTTGACCAAGCCGGAG
ACGAGGAAGACGGCCATGCAGCTCACCGCCGACAACAAGCTCGGCTACCG
CTCGTCCAAGGGGGGTCCGGTCAGCAAGGGGACTCTGTTGCAGTACGTCC
TCGAGCAGAAGGAGAAGCACCCCACGAAGGTACTGCTTACGCGGGTGGGG
GAGTTCTACGAGACCTACGGCGTGGACGCGGTGATGATGATGCAGCACGC
CGGCCTCAACAAGATGGGGCAAGAAATCAGGGCCGGGTGCCCCCGAAGGA
ACGTGCAACAAACCATCGACGGCCTCACGGGCGCGGGTCTCACTGTGGCG
GTCTACGAAGAGGCGAGAATCGGGGAGGGGGGGGGGGGGGGGGGCGTACT
CTTATGTTTTGCATGTCTTAGCGGTTAG back to top
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