EsuBft321_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft321_6a-0001
Unique NameEsuBft321_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_235contigScaffold_235:74576..77606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog227086.JGI_V11_82345
ProteomeIdEsuBft321_6
Protein domainsIPR007695
Protein domainsPTHR11361
Protein domainsIPR016151
Ownerapollo_admin@sb-roscoff.fr
Notedna mismatch repair protein mitochondrial os:arabidopsis thaliana gn:msh1 pe:1 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length1728
Hectar predicted targeting categoryother localisation
Evalue6.01e-29
EggNOG OGsCOG0249@1|root,KOG0217@2759|Eukaryota
Ec32 ortholog descriptionAP2/ERF domain protein
Ec32 orthologEc-01_004370.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameMSH6
KEGG koko:K08737
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
GOsGO:0000003,GO:0000166,GO:0000217,GO:0000400,GO:0000403,GO:0000404,GO:0000406,GO:0000710,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0030554,GO:0030983,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032135,GO:0032137,GO:0032300,GO:0032301,GO:0032302,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036297,GO:0042623,GO:0043111,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045005,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051716,GO:0060255,GO:0061982,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1903046,GO:1990391,GO:2000104,GO:2000112,GO:2000113
Descriptionmismatched DNA binding
COG categoryL
BRITEko00000,ko00001,ko00002,ko03400
Cross References
External references for this mRNA
DatabaseAccession
GO0019219
GO2000112
GO0051276
GO0030983
GO0009507
GO0009408
GO0005524
GO0005515
GO1902589
GO0006298
GO0005739
GO0032042
GO0043412
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft321_6aEsuBft321_6aEctocarpus subulatus male Bft15bgeneScaffold_235 74576..77606 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_6a-0001-exonagat-exon-90325Ectocarpus subulatus male Bft15bexonScaffold_235 74576..74824 -
EsuBft321_6a-0001-exonagat-exon-90326Ectocarpus subulatus male Bft15bexonScaffold_235 75330..75513 -
EsuBft321_6a-0001-exonEsuBft321_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_235 76312..77606 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_6a-0001-cdsEsuBft321_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_235 74576..74824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_6a-0001EsuBft321_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_235 74576..77606 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft321_6a-0001 ID=EsuBft321_6a-0001|Name=EsuBft321_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1728bp|location=Sequence derived from alignment at Scaffold_235:74576..77606- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGTTATCGAAGAAGAAGCAGCGCAGGCAACGGCCAAGGTAGCGGC
GGAGGCAGTGACACAACCAACTCGAGGGGCAGAGAGCCGTGGGGGGAAGG
GGATAGTCTCCGAGAACCCTCTCTCCGGTGCTACCGCCAAAAGCAGGAAG
GAGAAGGCTAAGAACGGCGAGGGTGTCACGGGCGCTCCCGAGGGAGGAGA
GGAAATCCCCGCCGCTGCAGCCGTCGCGCAAGCGAAGGCAGCAGCAGACA
CGGCGGGGGTGGCGGAAGCGGCCCCCCGTGCTGCCGCCGCCACCGCGGAC
TTCCGCTACCAGGACGAGCTCGATTTTCGGGACCTGGAGGAGATCCCAGA
AAGCACGGGGCCGTCCTTCTGGGGGGACGACGACGACGCCACGCTGGCAT
CGACGTGGGCAACAACGGCCGAGCGACAAGGAGGCGGCGGTGATGATGAT
GGTGGCAAGGCTGCTGCTGCTCTTGTCAAAGAGGGGAGCAGTAGGAGCAG
CAGCAGCAGCAGCAGCAGCGTCGCCACAACAGCCCCGACCGTTCCTTATC
GTGGCCGGGCTGTCGGCGAGTCGAGCCCTCCGAAGTACACCGGGCTTGCA
GAAGGAGGACCGGGTGCAGACGTGACAGCGGGAGCAGCGGGAGGGGAATC
GGAGCCCGGTCCTGGCAACGGCATCCCTCCGGGGAACGACGAGAGCGCAC
TGGTGGTCCCCTCACCAACTTCCGCACCAGCTGCTAGCGGCAGTAGCACC
ACCACCACGATCAAGATGTCGCGTGCGGCGGCGGGGATGGCTTCCGTCGG
GGGCGAGGCCAAGGCAGGAGTTGCTGGCCGTCGGAGGCGTCGTTCGTTGT
CGACCTTAGCATCGTCGCAGCAGGCGAAGTCATCGCCACCGCCTCCACCA
CCTGCCTCTGCCGCGGTCGGCACCGGCACCTCGAGCTCAAACCCACCAGT
AGCAGCGCCGCCACTACCGCCAAGCCACGTGGCTGCCGAACGCGTAGAGG
GGGGCGCAAGCGTTGCCGCTGATGTCGCTGCCATGCCCAGCAAGGCGGCC
TCAGAAGGGCCGCCATTGGCGCTGGCGTCACCGGAGACGGCGGGCGGGGC
GGCAGCGGGGTTGGACGGTTCTGGTCAGCGGGAGGGGGGAGAAGCGAACG
GCATGGGTGGGGGAGAGGGCTGGAGCGGGGAGGGGGGCGGAGCAGAGACG
ACGGGAGCGTGGTCCGGGGGGGGGGCAAGGTGGGAGAGGGATGAGGCCGA
AGAAGACGTGTACGAGGAGAATCTCAAGGCCCTGGTCGGCGTCAGCACCG
GGCCTCACGACTACTGGATGGGGCCGCTGATGGCGTTGACCAAGCCGGAG
ACGAGGAAGACGGCCATGCAGCTCACCGCCGACAACAAGCTCGGCTACCG
CTCGTCCAAGGGGGGTCCGGTCAGCAAGGGGACTCTGTTGCAGTACGTCC
TCGAGCAGAAGGAGAAGCACCCCACGAAGGTACTGCTTACGCGGGTGGGG
GAGTTCTACGAGACCTACGGCGTGGACGCGGTGATGATGATGCAGCACGC
CGGCCTCAACAAGATGGGGCAAGAAATCAGGGCCGGGTGCCCCCGAAGGA
ACGTGCAACAAACCATCGACGGCCTCACGGGCGCGGGTCTCACTGTGGCG
GTCTACGAAGAGGCGAGAATCGGGGAGGGGGGGGGGGGGGGGGGCGTACT
CTTATGTTTTGCATGTCTTAGCGGTTAG
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protein sequence of EsuBft321_6a-0001

>EsuBft321_6 ID=EsuBft321_6|Name=EsuBft321_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=575bp
MAVIEEEAAQATAKVAAEAVTQPTRGAESRGGKGIVSENPLSGATAKSRK
EKAKNGEGVTGAPEGGEEIPAAAAVAQAKAAADTAGVAEAAPRAAAATAD
FRYQDELDFRDLEEIPESTGPSFWGDDDDATLASTWATTAERQGGGGDDD
GGKAAAALVKEGSSRSSSSSSSSVATTAPTVPYRGRAVGESSPPKYTGLA
EGGPGADVTAGAAGGESEPGPGNGIPPGNDESALVVPSPTSAPAASGSST
TTTIKMSRAAAGMASVGGEAKAGVAGRRRRRSLSTLASSQQAKSSPPPPP
PASAAVGTGTSSSNPPVAAPPLPPSHVAAERVEGGASVAADVAAMPSKAA
SEGPPLALASPETAGGAAAGLDGSGQREGGEANGMGGGEGWSGEGGGAET
TGAWSGGGARWERDEAEEDVYEENLKALVGVSTGPHDYWMGPLMALTKPE
TRKTAMQLTADNKLGYRSSKGGPVSKGTLLQYVLEQKEKHPTKVLLTRVG
EFYETYGVDAVMMMQHAGLNKMGQEIRAGCPRRNVQQTIDGLTGAGLTVA
VYEEARIGEGGGGGGVLLCFACLSG
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mRNA from alignment at Scaffold_235:74576..77606-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft321_6a-0001 ID=EsuBft321_6a-0001|Name=EsuBft321_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3031bp|location=Sequence derived from alignment at Scaffold_235:74576..77606- (Ectocarpus subulatus male Bft15b)
ATGGCAGTTATCGAAGAAGAAGCAGCGCAGGCAACGGCCAAGGTAGCGGC
GGAGGCAGTGACACAACCAACTCGAGGGGCAGAGAGCCGTGGGGGGAAGG
GGATAGTCTCCGAGAACCCTCTCTCCGGTGCTACCGCCAAAAGCAGGAAG
GAGAAGGCTAAGAACGGCGAGGGTGTCACGGGCGCTCCCGAGGGAGGAGA
GGAAATCCCCGCCGCTGCAGCCGTCGCGCAAGCGAAGGCAGCAGCAGACA
CGGCGGGGGTGGCGGAAGCGGCCCCCCGTGCTGCCGCCGCCACCGCGGAC
TTCCGCTACCAGGACGAGCTCGATTTTCGGGACCTGGAGGAGATCCCAGA
AAGCACGGGGCCGTCCTTCTGGGGGGACGACGACGACGCCACGCTGGCAT
CGACGTGGGCAACAACGGCCGAGCGACAAGGAGGCGGCGGTGATGATGAT
GGTGGCAAGGCTGCTGCTGCTCTTGTCAAAGAGGGGAGCAGTAGGAGCAG
CAGCAGCAGCAGCAGCAGCGTCGCCACAACAGCCCCGACCGTTCCTTATC
GTGGCCGGGCTGTCGGCGAGTCGAGCCCTCCGAAGTACACCGGGCTTGCA
GAAGGAGGACCGGGTGCAGACGTGACAGCGGGAGCAGCGGGAGGGGAATC
GGAGCCCGGTCCTGGCAACGGCATCCCTCCGGGGAACGACGAGAGCGCAC
TGGTGGTCCCCTCACCAACTTCCGCACCAGCTGCTAGCGGCAGTAGCACC
ACCACCACGATCAAGATGTCGCGTGCGGCGGCGGGGATGGCTTCCGTCGG
GGGCGAGGCCAAGGCAGGAGTTGCTGGCCGTCGGAGGCGTCGTTCGTTGT
CGACCTTAGCATCGTCGCAGCAGGCGAAGTCATCGCCACCGCCTCCACCA
CCTGCCTCTGCCGCGGTCGGCACCGGCACCTCGAGCTCAAACCCACCAGT
AGCAGCGCCGCCACTACCGCCAAGCCACGTGGCTGCCGAACGCGTAGAGG
GGGGCGCAAGCGTTGCCGCTGATGTCGCTGCCATGCCCAGCAAGGCGGCC
TCAGAAGGGCCGCCATTGGCGCTGGCGTCACCGGAGACGGCGGGCGGGGC
GGCAGCGGGGTTGGACGGTTCTGGTCAGCGGGAGGGGGGAGAAGCGAACG
GCATGGGTGGGGGAGAGGGCTGGAGCGGGGAGGGGGGCGGAGCAGAGACG
ACGGGAGCGTGGTCCGGGGGGGGGGCAAGGTGGGAGAGGGATGAGGCCGA
AGAAGACGTGTACGAGGAGAATCTCAAGGCCCTGGTCGGCGTCAGGTAAC
TGGGGGAAGCGGGGGACGGGTTCCCTCTTATTCTTGTTGCCCAAGACTAT
TGACACACTTGGCCACGCATCCCTTTGAAAAGTATCACTGCTCTTACATT
CGAAAGAAAAACCTGCTGTTTCCGACGCTGCGCACGCGTTTCCGCCAAGT
TCTACAACGCAACACGCTGTTTCGCTCGTCCGTTACTCCGGTGTTTGGTT
TCGTTGTTTGGCCACTACTTTTTTCCTGATGGTGCGCAGCGATCGCTGTC
TCCCTGTTTGCCGTGTTGTGAGGTACACGGGTTAAAGGTCGGGGAGATAC
AATGCAGTCACATATGGATGCAGTTTAAGGCATTTCACTTCTCCTTGTTG
GTCTTGGGCCGTGTTTCGTTAGCTTCGAGTGTTGAGTGTCGCCGTCGCCT
GCTTCTTCGCTGCCTTGGGCGCGTACGGGCATCACCTTGCTGTAGCAGTT
GGTTTCTCGCGCTGGGCCTCTCGACGACAGCCAAGGGACTTCCACGCACT
CCCCCTTTGAAAGGTCACTCGCTGCTCCCTTCCTTCCTGTCTGCCTGCCT
GTCTCCTGCCCTTCCGCGCACAGCCCGCCCGCTCTACTGCCCACCCACCA
CACCCTTGTCGGATCTTTATCCTTTCCCGATATTCGTTTCTCAGCCGCTT
CGTTTGTCCTTCGACGATTACAACGTACATCCCCTTGTTGATCCGTTCAC
CTTTCAACCTACTATTACCCACCCACCAACATGACGCCGCCGCTGGCGCC
GCGGCCGCCGCCGTCGCCTGGCACCGCCCGTCCGCGAGAGCAGCACCGGG
CCTCACGACTACTGGATGGGGCCGCTGATGGCGTTGACCAAGCCGGAGAC
GAGGAAGACGGCCATGCAGCTCACCGCCGACAACAAGCTCGGCTACCGCT
CGTCCAAGGGGGGTCCGGTCAGCAAGGGGACTCTGTTGCAGTACGTCCTC
GAGCAGAAGGAGAAGCACCCCACGAAGGTGATGGCGGGGGGTGCGGGGCG
GGTAGGCACGGGCGGTGGTTCAAGTAGCAACGCTCGTCCGGACGTTTTTT
CCTGAAACGTGCTGCTGCTGCTGCTGTGTTTTCGCCCTCCGTCCAAGCCC
AAGATTGCTGTCGATATCGTGGCCGTTTCCGAGTCTGAAAATAGCGGTCG
TGTAGCCACTCGTGCGAAAGAAAAAAGTAGCTCTTTCGCGATGTGGGCAC
GCGGTTTTGGCACGCGCGTAACGTGGGAGATGGTACCATGCGCGACGCAA
GCGTTTATCCGGTAGCTGCTACTACAGGCACCACGTCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTGGGTCGAGAAAGCAACGAGAATCGCACTC
ATCTCCCCCCTTCGAGACCCCCCCCCCCTCCCCCCTTACACGCATCCTTC
TACAAGAAACAAATCCCGGAACCAACACGCAGGTACTGCTTACGCGGGTG
GGGGAGTTCTACGAGACCTACGGCGTGGACGCGGTGATGATGATGCAGCA
CGCCGGCCTCAACAAGATGGGGCAAGAAATCAGGGCCGGGTGCCCCCGAA
GGAACGTGCAACAAACCATCGACGGCCTCACGGGCGCGGGTCTCACTGTG
GCGGTCTACGAAGAGGCGAGAATCGGGGAGGGGGGGGGGGGGGGGGGCGT
ACTCTTATGTTTTGCATGTCTTAGCGGTTAG
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Coding sequence (CDS) from alignment at Scaffold_235:74576..77606-

>EsuBft321_6a-0001 ID=EsuBft321_6a-0001|Name=EsuBft321_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1728bp|location=Sequence derived from alignment at Scaffold_235:74576..77606- (Ectocarpus subulatus male Bft15b)
ATGGCAGTTATCGAAGAAGAAGCAGCGCAGGCAACGGCCAAGGTAGCGGC
GGAGGCAGTGACACAACCAACTCGAGGGGCAGAGAGCCGTGGGGGGAAGG
GGATAGTCTCCGAGAACCCTCTCTCCGGTGCTACCGCCAAAAGCAGGAAG
GAGAAGGCTAAGAACGGCGAGGGTGTCACGGGCGCTCCCGAGGGAGGAGA
GGAAATCCCCGCCGCTGCAGCCGTCGCGCAAGCGAAGGCAGCAGCAGACA
CGGCGGGGGTGGCGGAAGCGGCCCCCCGTGCTGCCGCCGCCACCGCGGAC
TTCCGCTACCAGGACGAGCTCGATTTTCGGGACCTGGAGGAGATCCCAGA
AAGCACGGGGCCGTCCTTCTGGGGGGACGACGACGACGCCACGCTGGCAT
CGACGTGGGCAACAACGGCCGAGCGACAAGGAGGCGGCGGTGATGATGAT
GGTGGCAAGGCTGCTGCTGCTCTTGTCAAAGAGGGGAGCAGTAGGAGCAG
CAGCAGCAGCAGCAGCAGCGTCGCCACAACAGCCCCGACCGTTCCTTATC
GTGGCCGGGCTGTCGGCGAGTCGAGCCCTCCGAAGTACACCGGGCTTGCA
GAAGGAGGACCGGGTGCAGACGTGACAGCGGGAGCAGCGGGAGGGGAATC
GGAGCCCGGTCCTGGCAACGGCATCCCTCCGGGGAACGACGAGAGCGCAC
TGGTGGTCCCCTCACCAACTTCCGCACCAGCTGCTAGCGGCAGTAGCACC
ACCACCACGATCAAGATGTCGCGTGCGGCGGCGGGGATGGCTTCCGTCGG
GGGCGAGGCCAAGGCAGGAGTTGCTGGCCGTCGGAGGCGTCGTTCGTTGT
CGACCTTAGCATCGTCGCAGCAGGCGAAGTCATCGCCACCGCCTCCACCA
CCTGCCTCTGCCGCGGTCGGCACCGGCACCTCGAGCTCAAACCCACCAGT
AGCAGCGCCGCCACTACCGCCAAGCCACGTGGCTGCCGAACGCGTAGAGG
GGGGCGCAAGCGTTGCCGCTGATGTCGCTGCCATGCCCAGCAAGGCGGCC
TCAGAAGGGCCGCCATTGGCGCTGGCGTCACCGGAGACGGCGGGCGGGGC
GGCAGCGGGGTTGGACGGTTCTGGTCAGCGGGAGGGGGGAGAAGCGAACG
GCATGGGTGGGGGAGAGGGCTGGAGCGGGGAGGGGGGCGGAGCAGAGACG
ACGGGAGCGTGGTCCGGGGGGGGGGCAAGGTGGGAGAGGGATGAGGCCGA
AGAAGACGTGTACGAGGAGAATCTCAAGGCCCTGGTCGGCGTCAGCACCG
GGCCTCACGACTACTGGATGGGGCCGCTGATGGCGTTGACCAAGCCGGAG
ACGAGGAAGACGGCCATGCAGCTCACCGCCGACAACAAGCTCGGCTACCG
CTCGTCCAAGGGGGGTCCGGTCAGCAAGGGGACTCTGTTGCAGTACGTCC
TCGAGCAGAAGGAGAAGCACCCCACGAAGGTACTGCTTACGCGGGTGGGG
GAGTTCTACGAGACCTACGGCGTGGACGCGGTGATGATGATGCAGCACGC
CGGCCTCAACAAGATGGGGCAAGAAATCAGGGCCGGGTGCCCCCGAAGGA
ACGTGCAACAAACCATCGACGGCCTCACGGGCGCGGGTCTCACTGTGGCG
GTCTACGAAGAGGCGAGAATCGGGGAGGGGGGGGGGGGGGGGGGCGTACT
CTTATGTTTTGCATGTCTTAGCGGTTAG
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