EsuBft321_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Seed ortholog	227086.JGI_V11_82345
ProteomeId	EsuBft321_6
Protein domains	IPR007695
Protein domains	PTHR11361
Protein domains	IPR016151
Owner	apollo_admin@sb-roscoff.fr
Note	dna mismatch repair protein mitochondrial os:arabidopsis thaliana gn:msh1 pe:1 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	1728
Hectar predicted targeting category	other localisation
Evalue	6.01e-29
EggNOG OGs	COG0249@1\|root,KOG0217@2759\|Eukaryota
Ec32 ortholog description	AP2/ERF domain protein
Ec32 ortholog	Ec-01_004370.1
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	MSH6
KEGG ko	ko:K08737
KEGG Pathway	ko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG Module	M00295
GOs	GO:0000003,GO:0000166,GO:0000217,GO:0000400,GO:0000403,GO:0000404,GO:0000406,GO:0000710,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0030554,GO:0030983,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032135,GO:0032137,GO:0032300,GO:0032301,GO:0032302,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036297,GO:0042623,GO:0043111,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045005,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051716,GO:0060255,GO:0061982,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1903046,GO:1990391,GO:2000104,GO:2000112,GO:2000113
Description	mismatched DNA binding
COG category	L
BRITE	ko00000,ko00001,ko00002,ko03400

Cross References

External references for this mRNA


Database	Accession
GO	0019219
GO	2000112
GO	0051276
GO	0030983
GO	0009507
GO	0009408
GO	0005524
GO	0005515
GO	1902589
GO	0006298
GO	0005739
GO	0032042
GO	0043412

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_235:74576..77606-
coding sequence from alignment at Scaffold_235:74576..77606-

spliced messenger RNA

>EsuBft321_6a-0001 ID=EsuBft321_6a-0001|Name=EsuBft321_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1728bp|location=Sequence derived from alignment at Scaffold_235:74576..77606- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGTTATCGAAGAAGAAGCAGCGCAGGCAACGGCCAAGGTAGCGGC
GGAGGCAGTGACACAACCAACTCGAGGGGCAGAGAGCCGTGGGGGGAAGG
GGATAGTCTCCGAGAACCCTCTCTCCGGTGCTACCGCCAAAAGCAGGAAG
GAGAAGGCTAAGAACGGCGAGGGTGTCACGGGCGCTCCCGAGGGAGGAGA
GGAAATCCCCGCCGCTGCAGCCGTCGCGCAAGCGAAGGCAGCAGCAGACA
CGGCGGGGGTGGCGGAAGCGGCCCCCCGTGCTGCCGCCGCCACCGCGGAC
TTCCGCTACCAGGACGAGCTCGATTTTCGGGACCTGGAGGAGATCCCAGA
AAGCACGGGGCCGTCCTTCTGGGGGGACGACGACGACGCCACGCTGGCAT
CGACGTGGGCAACAACGGCCGAGCGACAAGGAGGCGGCGGTGATGATGAT
GGTGGCAAGGCTGCTGCTGCTCTTGTCAAAGAGGGGAGCAGTAGGAGCAG
CAGCAGCAGCAGCAGCAGCGTCGCCACAACAGCCCCGACCGTTCCTTATC
GTGGCCGGGCTGTCGGCGAGTCGAGCCCTCCGAAGTACACCGGGCTTGCA
GAAGGAGGACCGGGTGCAGACGTGACAGCGGGAGCAGCGGGAGGGGAATC
GGAGCCCGGTCCTGGCAACGGCATCCCTCCGGGGAACGACGAGAGCGCAC
TGGTGGTCCCCTCACCAACTTCCGCACCAGCTGCTAGCGGCAGTAGCACC
ACCACCACGATCAAGATGTCGCGTGCGGCGGCGGGGATGGCTTCCGTCGG
GGGCGAGGCCAAGGCAGGAGTTGCTGGCCGTCGGAGGCGTCGTTCGTTGT
CGACCTTAGCATCGTCGCAGCAGGCGAAGTCATCGCCACCGCCTCCACCA
CCTGCCTCTGCCGCGGTCGGCACCGGCACCTCGAGCTCAAACCCACCAGT
AGCAGCGCCGCCACTACCGCCAAGCCACGTGGCTGCCGAACGCGTAGAGG
GGGGCGCAAGCGTTGCCGCTGATGTCGCTGCCATGCCCAGCAAGGCGGCC
TCAGAAGGGCCGCCATTGGCGCTGGCGTCACCGGAGACGGCGGGCGGGGC
GGCAGCGGGGTTGGACGGTTCTGGTCAGCGGGAGGGGGGAGAAGCGAACG
GCATGGGTGGGGGAGAGGGCTGGAGCGGGGAGGGGGGCGGAGCAGAGACG
ACGGGAGCGTGGTCCGGGGGGGGGGCAAGGTGGGAGAGGGATGAGGCCGA
AGAAGACGTGTACGAGGAGAATCTCAAGGCCCTGGTCGGCGTCAGCACCG
GGCCTCACGACTACTGGATGGGGCCGCTGATGGCGTTGACCAAGCCGGAG
ACGAGGAAGACGGCCATGCAGCTCACCGCCGACAACAAGCTCGGCTACCG
CTCGTCCAAGGGGGGTCCGGTCAGCAAGGGGACTCTGTTGCAGTACGTCC
TCGAGCAGAAGGAGAAGCACCCCACGAAGGTACTGCTTACGCGGGTGGGG
GAGTTCTACGAGACCTACGGCGTGGACGCGGTGATGATGATGCAGCACGC
CGGCCTCAACAAGATGGGGCAAGAAATCAGGGCCGGGTGCCCCCGAAGGA
ACGTGCAACAAACCATCGACGGCCTCACGGGCGCGGGTCTCACTGTGGCG
GTCTACGAAGAGGCGAGAATCGGGGAGGGGGGGGGGGGGGGGGGCGTACT
CTTATGTTTTGCATGTCTTAGCGGTTAG

protein sequence of EsuBft321_6a-0001

>EsuBft321_6 ID=EsuBft321_6|Name=EsuBft321_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=575bp
MAVIEEEAAQATAKVAAEAVTQPTRGAESRGGKGIVSENPLSGATAKSRK
EKAKNGEGVTGAPEGGEEIPAAAAVAQAKAAADTAGVAEAAPRAAAATAD
FRYQDELDFRDLEEIPESTGPSFWGDDDDATLASTWATTAERQGGGGDDD
GGKAAAALVKEGSSRSSSSSSSSVATTAPTVPYRGRAVGESSPPKYTGLA
EGGPGADVTAGAAGGESEPGPGNGIPPGNDESALVVPSPTSAPAASGSST
TTTIKMSRAAAGMASVGGEAKAGVAGRRRRRSLSTLASSQQAKSSPPPPP
PASAAVGTGTSSSNPPVAAPPLPPSHVAAERVEGGASVAADVAAMPSKAA
SEGPPLALASPETAGGAAAGLDGSGQREGGEANGMGGGEGWSGEGGGAET
TGAWSGGGARWERDEAEEDVYEENLKALVGVSTGPHDYWMGPLMALTKPE
TRKTAMQLTADNKLGYRSSKGGPVSKGTLLQYVLEQKEKHPTKVLLTRVG
EFYETYGVDAVMMMQHAGLNKMGQEIRAGCPRRNVQQTIDGLTGAGLTVA
VYEEARIGEGGGGGGVLLCFACLSG

mRNA from alignment at Scaffold_235:74576..77606-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft321_6a-0001 ID=EsuBft321_6a-0001|Name=EsuBft321_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3031bp|location=Sequence derived from alignment at Scaffold_235:74576..77606- (Ectocarpus subulatus male Bft15b)
ATGGCAGTTATCGAAGAAGAAGCAGCGCAGGCAACGGCCAAGGTAGCGGC
GGAGGCAGTGACACAACCAACTCGAGGGGCAGAGAGCCGTGGGGGGAAGG
GGATAGTCTCCGAGAACCCTCTCTCCGGTGCTACCGCCAAAAGCAGGAAG
GAGAAGGCTAAGAACGGCGAGGGTGTCACGGGCGCTCCCGAGGGAGGAGA
GGAAATCCCCGCCGCTGCAGCCGTCGCGCAAGCGAAGGCAGCAGCAGACA
CGGCGGGGGTGGCGGAAGCGGCCCCCCGTGCTGCCGCCGCCACCGCGGAC
TTCCGCTACCAGGACGAGCTCGATTTTCGGGACCTGGAGGAGATCCCAGA
AAGCACGGGGCCGTCCTTCTGGGGGGACGACGACGACGCCACGCTGGCAT
CGACGTGGGCAACAACGGCCGAGCGACAAGGAGGCGGCGGTGATGATGAT
GGTGGCAAGGCTGCTGCTGCTCTTGTCAAAGAGGGGAGCAGTAGGAGCAG
CAGCAGCAGCAGCAGCAGCGTCGCCACAACAGCCCCGACCGTTCCTTATC
GTGGCCGGGCTGTCGGCGAGTCGAGCCCTCCGAAGTACACCGGGCTTGCA
GAAGGAGGACCGGGTGCAGACGTGACAGCGGGAGCAGCGGGAGGGGAATC
GGAGCCCGGTCCTGGCAACGGCATCCCTCCGGGGAACGACGAGAGCGCAC
TGGTGGTCCCCTCACCAACTTCCGCACCAGCTGCTAGCGGCAGTAGCACC
ACCACCACGATCAAGATGTCGCGTGCGGCGGCGGGGATGGCTTCCGTCGG
GGGCGAGGCCAAGGCAGGAGTTGCTGGCCGTCGGAGGCGTCGTTCGTTGT
CGACCTTAGCATCGTCGCAGCAGGCGAAGTCATCGCCACCGCCTCCACCA
CCTGCCTCTGCCGCGGTCGGCACCGGCACCTCGAGCTCAAACCCACCAGT
AGCAGCGCCGCCACTACCGCCAAGCCACGTGGCTGCCGAACGCGTAGAGG
GGGGCGCAAGCGTTGCCGCTGATGTCGCTGCCATGCCCAGCAAGGCGGCC
TCAGAAGGGCCGCCATTGGCGCTGGCGTCACCGGAGACGGCGGGCGGGGC
GGCAGCGGGGTTGGACGGTTCTGGTCAGCGGGAGGGGGGAGAAGCGAACG
GCATGGGTGGGGGAGAGGGCTGGAGCGGGGAGGGGGGCGGAGCAGAGACG
ACGGGAGCGTGGTCCGGGGGGGGGGCAAGGTGGGAGAGGGATGAGGCCGA
AGAAGACGTGTACGAGGAGAATCTCAAGGCCCTGGTCGGCGTCAGGTAAC
TGGGGGAAGCGGGGGACGGGTTCCCTCTTATTCTTGTTGCCCAAGACTAT
TGACACACTTGGCCACGCATCCCTTTGAAAAGTATCACTGCTCTTACATT
CGAAAGAAAAACCTGCTGTTTCCGACGCTGCGCACGCGTTTCCGCCAAGT
TCTACAACGCAACACGCTGTTTCGCTCGTCCGTTACTCCGGTGTTTGGTT
TCGTTGTTTGGCCACTACTTTTTTCCTGATGGTGCGCAGCGATCGCTGTC
TCCCTGTTTGCCGTGTTGTGAGGTACACGGGTTAAAGGTCGGGGAGATAC
AATGCAGTCACATATGGATGCAGTTTAAGGCATTTCACTTCTCCTTGTTG
GTCTTGGGCCGTGTTTCGTTAGCTTCGAGTGTTGAGTGTCGCCGTCGCCT
GCTTCTTCGCTGCCTTGGGCGCGTACGGGCATCACCTTGCTGTAGCAGTT
GGTTTCTCGCGCTGGGCCTCTCGACGACAGCCAAGGGACTTCCACGCACT
CCCCCTTTGAAAGGTCACTCGCTGCTCCCTTCCTTCCTGTCTGCCTGCCT
GTCTCCTGCCCTTCCGCGCACAGCCCGCCCGCTCTACTGCCCACCCACCA
CACCCTTGTCGGATCTTTATCCTTTCCCGATATTCGTTTCTCAGCCGCTT
CGTTTGTCCTTCGACGATTACAACGTACATCCCCTTGTTGATCCGTTCAC
CTTTCAACCTACTATTACCCACCCACCAACATGACGCCGCCGCTGGCGCC
GCGGCCGCCGCCGTCGCCTGGCACCGCCCGTCCGCGAGAGCAGCACCGGG
CCTCACGACTACTGGATGGGGCCGCTGATGGCGTTGACCAAGCCGGAGAC
GAGGAAGACGGCCATGCAGCTCACCGCCGACAACAAGCTCGGCTACCGCT
CGTCCAAGGGGGGTCCGGTCAGCAAGGGGACTCTGTTGCAGTACGTCCTC
GAGCAGAAGGAGAAGCACCCCACGAAGGTGATGGCGGGGGGTGCGGGGCG
GGTAGGCACGGGCGGTGGTTCAAGTAGCAACGCTCGTCCGGACGTTTTTT
CCTGAAACGTGCTGCTGCTGCTGCTGTGTTTTCGCCCTCCGTCCAAGCCC
AAGATTGCTGTCGATATCGTGGCCGTTTCCGAGTCTGAAAATAGCGGTCG
TGTAGCCACTCGTGCGAAAGAAAAAAGTAGCTCTTTCGCGATGTGGGCAC
GCGGTTTTGGCACGCGCGTAACGTGGGAGATGGTACCATGCGCGACGCAA
GCGTTTATCCGGTAGCTGCTACTACAGGCACCACGTCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTGGGTCGAGAAAGCAACGAGAATCGCACTC
ATCTCCCCCCTTCGAGACCCCCCCCCCCTCCCCCCTTACACGCATCCTTC
TACAAGAAACAAATCCCGGAACCAACACGCAGGTACTGCTTACGCGGGTG
GGGGAGTTCTACGAGACCTACGGCGTGGACGCGGTGATGATGATGCAGCA
CGCCGGCCTCAACAAGATGGGGCAAGAAATCAGGGCCGGGTGCCCCCGAA
GGAACGTGCAACAAACCATCGACGGCCTCACGGGCGCGGGTCTCACTGTG
GCGGTCTACGAAGAGGCGAGAATCGGGGAGGGGGGGGGGGGGGGGGGCGT
ACTCTTATGTTTTGCATGTCTTAGCGGTTAG

Coding sequence (CDS) from alignment at Scaffold_235:74576..77606-

>EsuBft321_6a-0001 ID=EsuBft321_6a-0001|Name=EsuBft321_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1728bp|location=Sequence derived from alignment at Scaffold_235:74576..77606- (Ectocarpus subulatus male Bft15b)
ATGGCAGTTATCGAAGAAGAAGCAGCGCAGGCAACGGCCAAGGTAGCGGC
GGAGGCAGTGACACAACCAACTCGAGGGGCAGAGAGCCGTGGGGGGAAGG
GGATAGTCTCCGAGAACCCTCTCTCCGGTGCTACCGCCAAAAGCAGGAAG
GAGAAGGCTAAGAACGGCGAGGGTGTCACGGGCGCTCCCGAGGGAGGAGA
GGAAATCCCCGCCGCTGCAGCCGTCGCGCAAGCGAAGGCAGCAGCAGACA
CGGCGGGGGTGGCGGAAGCGGCCCCCCGTGCTGCCGCCGCCACCGCGGAC
TTCCGCTACCAGGACGAGCTCGATTTTCGGGACCTGGAGGAGATCCCAGA
AAGCACGGGGCCGTCCTTCTGGGGGGACGACGACGACGCCACGCTGGCAT
CGACGTGGGCAACAACGGCCGAGCGACAAGGAGGCGGCGGTGATGATGAT
GGTGGCAAGGCTGCTGCTGCTCTTGTCAAAGAGGGGAGCAGTAGGAGCAG
CAGCAGCAGCAGCAGCAGCGTCGCCACAACAGCCCCGACCGTTCCTTATC
GTGGCCGGGCTGTCGGCGAGTCGAGCCCTCCGAAGTACACCGGGCTTGCA
GAAGGAGGACCGGGTGCAGACGTGACAGCGGGAGCAGCGGGAGGGGAATC
GGAGCCCGGTCCTGGCAACGGCATCCCTCCGGGGAACGACGAGAGCGCAC
TGGTGGTCCCCTCACCAACTTCCGCACCAGCTGCTAGCGGCAGTAGCACC
ACCACCACGATCAAGATGTCGCGTGCGGCGGCGGGGATGGCTTCCGTCGG
GGGCGAGGCCAAGGCAGGAGTTGCTGGCCGTCGGAGGCGTCGTTCGTTGT
CGACCTTAGCATCGTCGCAGCAGGCGAAGTCATCGCCACCGCCTCCACCA
CCTGCCTCTGCCGCGGTCGGCACCGGCACCTCGAGCTCAAACCCACCAGT
AGCAGCGCCGCCACTACCGCCAAGCCACGTGGCTGCCGAACGCGTAGAGG
GGGGCGCAAGCGTTGCCGCTGATGTCGCTGCCATGCCCAGCAAGGCGGCC
TCAGAAGGGCCGCCATTGGCGCTGGCGTCACCGGAGACGGCGGGCGGGGC
GGCAGCGGGGTTGGACGGTTCTGGTCAGCGGGAGGGGGGAGAAGCGAACG
GCATGGGTGGGGGAGAGGGCTGGAGCGGGGAGGGGGGCGGAGCAGAGACG
ACGGGAGCGTGGTCCGGGGGGGGGGCAAGGTGGGAGAGGGATGAGGCCGA
AGAAGACGTGTACGAGGAGAATCTCAAGGCCCTGGTCGGCGTCAGCACCG
GGCCTCACGACTACTGGATGGGGCCGCTGATGGCGTTGACCAAGCCGGAG
ACGAGGAAGACGGCCATGCAGCTCACCGCCGACAACAAGCTCGGCTACCG
CTCGTCCAAGGGGGGTCCGGTCAGCAAGGGGACTCTGTTGCAGTACGTCC
TCGAGCAGAAGGAGAAGCACCCCACGAAGGTACTGCTTACGCGGGTGGGG
GAGTTCTACGAGACCTACGGCGTGGACGCGGTGATGATGATGCAGCACGC
CGGCCTCAACAAGATGGGGCAAGAAATCAGGGCCGGGTGCCCCCGAAGGA
ACGTGCAACAAACCATCGACGGCCTCACGGGCGCGGGTCTCACTGTGGCG
GTCTACGAAGAGGCGAGAATCGGGGAGGGGGGGGGGGGGGGGGGCGTACT
CTTATGTTTTGCATGTCTTAGCGGTTAG