EsuBft559_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Seed ortholog	2880.D7FT57
ProteomeId	EsuBft559_9
Protein domains	IPR006689
Protein domains	IPR005225
Protein domains	IPR027417
Protein domains	IPR006687
Protein domains	IPR024156
Protein domains	PTHR11711
Owner	apollo_admin@sb-roscoff.fr
Note	adp-ribosylation factor-like protein 8b os:macaca fascicularis gn:arl8b pe:2 sv:1 [Automatic annotation]
Nb exon	5
Max annot lvl	2759\|Eukaryota
Length	983
Hectar predicted targeting category	other localisation
Evalue	2.14e-123
EggNOG OGs	COG1100@1\|root,KOG0075@2759\|Eukaryota
Ec32 ortholog description	ARL8, ARF-like Ras superfamily GTPase
Ec32 ortholog	Ec-19_003510.1
Date last modified	2016-06-13
Date creation	2016-06-13
Preferred name	ARL8A
KEGG ko	ko:K01197,ko:K07955,ko:K07977
KEGG Reaction	R07824,R07825,R10905
KEGG Pathway	ko00531,ko01100,map00531,map01100
KEGG Module	M00076,M00077
GOs	GO:0000166,GO:0000306,GO:0000323,GO:0000819,GO:0001666,GO:0001775,GO:0001882,GO:0001883,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005819,GO:0005856,GO:0005886,GO:0006810,GO:0006887,GO:0006928,GO:0006950,GO:0006955,GO:0006996,GO:0007017,GO:0007018,GO:0007034,GO:0007041,GO:0007049,GO:0007059,GO:0008088,GO:0008092,GO:0008150,GO:0008333,GO:0009628,GO:0009987,GO:0010008,GO:0010970,GO:0012505,GO:0012506,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019898,GO:0022402,GO:0030141,GO:0030496,GO:0030659,GO:0030667,GO:0030705,GO:0031090,GO:0031312,GO:0031410,GO:0031902,GO:0031982,GO:0032418,GO:0032419,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032940,GO:0035577,GO:0035639,GO:0036094,GO:0036230,GO:0036293,GO:0042119,GO:0042582,GO:0043014,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0045055,GO:0045202,GO:0045321,GO:0046903,GO:0046907,GO:0048487,GO:0048786,GO:0050896,GO:0051179,GO:0051233,GO:0051234,GO:0051276,GO:0051640,GO:0051641,GO:0051649,GO:0070482,GO:0070820,GO:0071840,GO:0071944,GO:0097159,GO:0097367,GO:0097458,GO:0097708,GO:0098588,GO:0098793,GO:0098805,GO:0098813,GO:0098852,GO:0099111,GO:0099503,GO:0101002,GO:0101003,GO:1901265,GO:1901363
EC	3.2.1.35
Description	Belongs to the small GTPase superfamily. Arf family
COG category	L
BRITE	ko00000,ko00001,ko00002,ko00536,ko00537,ko01000,ko02042,ko04031,ko04131

Cross References

External references for this mRNA


Database	Accession
GO	0006886
GO	0005525
GO	0007059
GO	0007264
GO	0019003
GO	0030496
GO	0043014
GO	0048487
GO	0070062
GO	0005765
GO	0051233

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_230:246226..249601-
coding sequence from alignment at Scaffold_230:246226..249601-

spliced messenger RNA

>EsuBft559_9a-0001 ID=EsuBft559_9a-0001|Name=EsuBft559_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=983bp|location=Sequence derived from alignment at Scaffold_230:246226..249601- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AACAAGAGAGCGGAGCGCCGAGAGCACCCACGACGTATCATTTAGTCTTC
ATTGGATAGCCCTTCAAGCGACGCGACTGCAGTCGGTCTTCTCTACCAAA
GTATTCCTACGAGTGACTCTGCGACGGCTGCTGTGTTGGCTGTCGGCTGC
TGCGACAACAGCAGTGCACCTTGCGCGGGAGCAAGTGTTCCCGTCGTTCC
TCTCCTCTCTCTCTCGACTCCTTCCTCTCCGTCTATCTTGTTCCAGCGGG
CACAACAACCTCTGCCCAACCGCAGCTGTGAAAAGAATTCCTTTTGTTTG
GGCTGCCTTAGAATTGTGGGTAGGCGACAGCGTTACTGTGATACCGAGCA
CGGCGGATAGCCGGCATACATACACCCGGCGGGCGCAACTAGCAGGGAGG
GTTTGGGGACGAAATCATCAATCATGGGGGCCGCCTTCCAGCGCATGCTC
TCGGCGTTCTACACGCGACAGCTGGAAGTGGTGCTGGTCGGTCTGGAGAA
CAGCGGGAAGACGACCTTGATGAATGTTCTCGCTAGCGGTCACCCGGTGG
ACACGGTTCCCACCATCGGGCTCAACGTCAAGATGATCAAGCGGGGCGGG
GTGCAAATGAAGTGCTGGGACATCGGGGGACAGGCCCAGTACCGTGGCGA
GTGGGGCCGCTACACCAGAGGGTGCGACGTGATCGTCTACGTTGTTGATG
CTCACGCCGAGGAGAAGGCGGCGCTCGCCAGACGAGAACTGCATCGATTA
CTGGAGGACGAGGAGCTGGCGTCTACGCCGCTGCTGGTGTTGGCGAACAA
GGTTGATCTGGAGCCGCATATGAGCGAGGACCAGGTCATCCGGGAGTTGA
ATCTCGACTACGTGACCGCAAACCCTTGGATTCTTATCCCGATATCTGCG
CTCAAGGTGATAAACATTGACCAGGTTTTGCAATGGCTCGTCAAGCAGTC
CCGAGGCTAGGCCGCATGCTCCTACCCCCCCCC

protein sequence of EsuBft559_9a-0001

>EsuBft559_9 ID=EsuBft559_9|Name=EsuBft559_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=178bp
MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGL
NVKMIKRGGVQMKCWDIGGQAQYRGEWGRYTRGCDVIVYVVDAHAEEKAA
LARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTAN
PWILIPISALKVINIDQVLQWLVKQSRG

mRNA from alignment at Scaffold_230:246226..249601-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft559_9a-0001 ID=EsuBft559_9a-0001|Name=EsuBft559_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3376bp|location=Sequence derived from alignment at Scaffold_230:246226..249601- (Ectocarpus subulatus male Bft15b)
AACAAGAGAGCGGAGCGCCGAGAGCACCCACGACGTATCATTTAGTCTTC
ATTGGATAGCCCTTCAAGCGACGCGACTGCAGTCGGTCTTCTCTACCAAA
GTATTCCTACGAGTGACTCTGCGACGGCTGCTGTGTTGGCTGTCGGCTGC
TGCGACAACAGCAGTGCACCTTGCGCGGGAGCAAGTGTTCCCGTCGTTCC
TCTCCTCTCTCTCTCGACTCCTTCCTCTCCGTCTATCTTGTTCCAGCGGG
CACAACAACCTCTGCCCAACCGCAGCTGTGAAAAGAATTCCTTTTGTTTG
GGCTGCCTTAGAATTGTGGGTAGGCGACAGCGTTACTGTGATACCGAGCA
CGGCGGATAGCCGGCATACATACACCCGGCGGGCGCAACTAGCAGGGAGG
GTTTGGGGACGAAATCATCAATCATGGGGGCCGCCTTCCAGCGCATGCTC
TCGGCGTTCTACACGCGACAGCTGGAAGTGGTGCTGGTCGGTCTGGAGAA
CAGCGGGAAGACGACCTTGATGAATGGTGAGCGCGAAGCAAGTGCTTGGT
ATGCATCCGCCAAAGAGACCCAGCAGTACAACTTACAATTATCCCCTTGT
TGCAGGTACAGGGCGTTCAGCTGTTGCTGCATAAAGCGGTACGGTAATGG
CCTGTGGTGTTATGTTACAACACCAGAGTGCCCATGCAACCATGGCAGAT
GTTAAGCTTCGATCAGTGTGTACTTAATTTGCCCGATGCTTGCAGCCAGC
CCTCCGATAGGTCGACAAAGGTACTGCCGTACCTTTCGGCATTTAATGCG
GCGAGACTTTTGCAACACAGTTCCAGTGCGGCGAGACTCCACACACACCT
GGCCTAGGTTGCGGGGAAGTAACTGGTATGCCATCCGAGAGGAAGAAATC
ACGCGGTGCTCTCTCTGTGCTAGCACCGATAGCCAAGTCCATAAGATAGC
ATAAGACAGCACACAATCAAATAATGGCGTAGGGCTTAGAGTAGCGGTCA
CGGATTTTTTACATTTCTTCCTCGGCTTTCTGCAGACACATACGCCGCGT
TGCCGGCAACGTACTGCTGTACTGGGTACAAGGGTGCGCTGATCGCAGCT
GTATGTTGGGCTTTTGGGGGGGAGAGTGGTATCCTCAGGTCCGACAATTA
AAGGACAGGACAAAAATTGCGCAACTTCGTCCCGCACGGCGGTTGCCACA
AACTACTTCGGTTTTCCTACCTTTGTTGCGTGTGGAAGGGAGCAGTTACA
GGGTCAGTGCGGTCTGCTTTCGTCGTGAACAGTCCTCTAAACTTGCTTTC
TCGCGTACTGCATAGTTCGTTCTTTCAACAGGTCTGCTGTGTGTCTACGG
CGACAAAACGGTAAAAGCATACCCTATGCGTAGGACCAATCGCAACGCCT
CACGTACACCTCCGCGTGTTCGTGCGATGCTGCTATTCTGTCCGCTCCGC
CCCAGTTCTCGCTAGCGGTCACCCGGTGGACACGGTTCCCACCATCGGGC
TCAACGTCAAGGTGCAGTTGTCTTGGGCCTTTCCCTTCGTAGTTGTGATT
TCGGCGATCGCTTTGGTTAGTGGTCAGCGAATCTGGTGGCATGGGTTTAG
CGCAGTTGGCGACAGTAATCTCAAAAAATTTTGGCGTTCAGTCTTGTGAT
GCGGTGCAATCGCGCGCGCGAAAAAGGAGCTTATACGCGCACCTCGTGCG
CCTCTGGCGTCAACACATGCCGCGTCTCATCCCAACCCGACCTGGTTGTG
TCGCCCGGCTGTATGGCTTTCCTGGTACCAATGTCGTTTCAGTCGAGCAT
TTTCAGTCAAACTCAGCCAAACGTTTCGCCCAGGTCCTCTCCAGAGGCAC
ATATTGGCCCAAGTTTGACTACGCGCCGAAATGGCTGATGAATGGCTTCC
CCCATCCAATAAGGTTAGGCTTGCAACAGGTGGCGTGCGCTCATCTTTCA
AACGCGAGAACTGACCCCCCCGGACCAAAAAAAAATAATCAGATGATCAA
GCGGGGCGGGGTGCAAATGAAGTGCTGGGACATCGGGGGACAGGCCCAGT
ACCGTGGCGAGTGGGGCCGCTACACCAGAGGGTGCGACGTGATCGTCTAC
GTTGTTGATGCTCACGCCGAGGAGAAGGTGAAAACCCGCCAAAACGAAAA
GTATTTGTCCGGCTTCCAGGAGCCGGTCTTTCTCCCACTCACTTGGGCAA
TAGGACGGACGGCTGCTGTTATCTAGAACGGGTGGTCTTTTCTGGGGTTG
TATGTATGTTTTCTGAAAACGTCGCTTGCAAGAAATGGGCGCGTGCTTGT
CCCTCTCCTTTTAGTAAGATTGGTTGGAGAGGACCGTTGTTTATGGCTCT
AATCGGGCCAGGCAGGTGTCCTCCATGTTACTCGATCAAGCGATGCATAT
GAAAAACAATCTCCCCTCCCTAACACCCAACACCTACACCCACACGCCTT
CTGCTCCGCCTCGTCCCCCCCCCCCNNNNNNNNNNNNNNNNNNCCCCCCC
CCCCGCCGAGGGCCGCGCGAGCGAAGTGATAGCTTTCGCTCTGGTTAAAA
TGAGAGTGATTGCCCGGCTCAACCCCTCGACGACGTCCCGCTACTGATTC
GTCGCACCCACCTCCAGCATGACCATGCGCCTACACCCATGCCCCCCCCA
AAAATCAAACGTGTTGATGACCAGCTTCAGGTCCTTGTGAAGCGTAGCCT
GGGTCGGTGAAAACCGGGCATACCGCTCCCCCCCCCCCATTGTAGGGATG
CTTGGTGAACGGTCTTATCACGTTACGGCCTGCGTTGACGTGAGTACCAC
CCCCCTCCCCCCCCCCATTGGAAACCCCTCTGCCCAGGCGGCGCTCGCCA
GACGAGAACTGCATCGATTACTGGAGGACGAGGAGCTGGCGTCTACGCCG
CTGCTGGTGTTGGCGAACAAGGTTGATCTGGAGCCGCATATGAGCGAGGA
CCAGGTCATCCGGGAGTTGAATCTCGACTACGTGACCGCAAACCCTTGGA
TTCTTATCCCGATATCTGCGCTCAAGGTAAATCATGTTGCTTTTGGTGGG
TGGTGATGGTGATGGTGATGGTGCTGCTGCCGCTGCCGCTGCCGCCGCTG
CCGCTGTGACAATTGGTCCATGGTTCCTTTTTTGTAGTTCAAGTTTGTTA
TTGTGTGCCACTTCTTTGAGGTCGTCCATCCATGTGGCACGCGCAAGACA
GCCAGAACCAAATACAGTTGTTCATGTTTTTAGCTGGACGCATAACTTCG
CGATCCTTCCTCTCTCGCTCTGCCGCTGTTGAACGGAACGTGACAAAAGG
TGATAAACATTGACCAGGTTTTGCAATGGCTCGTCAAGCAGTCCCGAGGC
TAGGCCGCATGCTCCTACCCCCCCCC

Coding sequence (CDS) from alignment at Scaffold_230:246226..249601-

>EsuBft559_9a-0001 ID=EsuBft559_9a-0001|Name=EsuBft559_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=537bp|location=Sequence derived from alignment at Scaffold_230:246226..249601- (Ectocarpus subulatus male Bft15b)
ATGGGGGCCGCCTTCCAGCGCATGCTCTCGGCGTTCTACACGCGACAGCT
GGAAGTGGTGCTGGTCGGTCTGGAGAACAGCGGGAAGACGACCTTGATGA
ATGTTCTCGCTAGCGGTCACCCGGTGGACACGGTTCCCACCATCGGGCTC
AACGTCAAGATGATCAAGCGGGGCGGGGTGCAAATGAAGTGCTGGGACAT
CGGGGGACAGGCCCAGTACCGTGGCGAGTGGGGCCGCTACACCAGAGGGT
GCGACGTGATCGTCTACGTTGTTGATGCTCACGCCGAGGAGAAGGCGGCG
CTCGCCAGACGAGAACTGCATCGATTACTGGAGGACGAGGAGCTGGCGTC
TACGCCGCTGCTGGTGTTGGCGAACAAGGTTGATCTGGAGCCGCATATGA
GCGAGGACCAGGTCATCCGGGAGTTGAATCTCGACTACGTGACCGCAAAC
CCTTGGATTCTTATCCCGATATCTGCGCTCAAGGTGATAAACATTGACCA
GGTTTTGCAATGGCTCGTCAAGCAGTCCCGAGGCTAG