EsuBft559_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft559_9a-0001
Unique NameEsuBft559_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_230contigScaffold_230:246226..249601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FT57
ProteomeIdEsuBft559_9
Protein domainsIPR006689
Protein domainsIPR005225
Protein domainsIPR027417
Protein domainsIPR006687
Protein domainsIPR024156
Protein domainsPTHR11711
Ownerapollo_admin@sb-roscoff.fr
Noteadp-ribosylation factor-like protein 8b os:macaca fascicularis gn:arl8b pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length983
Hectar predicted targeting categoryother localisation
Evalue2.14e-123
EggNOG OGsCOG1100@1|root,KOG0075@2759|Eukaryota
Ec32 ortholog descriptionARL8, ARF-like Ras superfamily GTPase
Ec32 orthologEc-19_003510.1
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameARL8A
KEGG koko:K01197,ko:K07955,ko:K07977
KEGG ReactionR07824,R07825,R10905
KEGG Pathwayko00531,ko01100,map00531,map01100
KEGG ModuleM00076,M00077
GOsGO:0000166,GO:0000306,GO:0000323,GO:0000819,GO:0001666,GO:0001775,GO:0001882,GO:0001883,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005819,GO:0005856,GO:0005886,GO:0006810,GO:0006887,GO:0006928,GO:0006950,GO:0006955,GO:0006996,GO:0007017,GO:0007018,GO:0007034,GO:0007041,GO:0007049,GO:0007059,GO:0008088,GO:0008092,GO:0008150,GO:0008333,GO:0009628,GO:0009987,GO:0010008,GO:0010970,GO:0012505,GO:0012506,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019898,GO:0022402,GO:0030141,GO:0030496,GO:0030659,GO:0030667,GO:0030705,GO:0031090,GO:0031312,GO:0031410,GO:0031902,GO:0031982,GO:0032418,GO:0032419,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032940,GO:0035577,GO:0035639,GO:0036094,GO:0036230,GO:0036293,GO:0042119,GO:0042582,GO:0043014,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0045055,GO:0045202,GO:0045321,GO:0046903,GO:0046907,GO:0048487,GO:0048786,GO:0050896,GO:0051179,GO:0051233,GO:0051234,GO:0051276,GO:0051640,GO:0051641,GO:0051649,GO:0070482,GO:0070820,GO:0071840,GO:0071944,GO:0097159,GO:0097367,GO:0097458,GO:0097708,GO:0098588,GO:0098793,GO:0098805,GO:0098813,GO:0098852,GO:0099111,GO:0099503,GO:0101002,GO:0101003,GO:1901265,GO:1901363
EC3.2.1.35
DescriptionBelongs to the small GTPase superfamily. Arf family
COG categoryL
BRITEko00000,ko00001,ko00002,ko00536,ko00537,ko01000,ko02042,ko04031,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0006886
GO0005525
GO0007059
GO0007264
GO0019003
GO0030496
GO0043014
GO0048487
GO0070062
GO0005765
GO0051233
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft559_9aEsuBft559_9aEctocarpus subulatus male Bft15bgeneScaffold_230 246226..249601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft559_9a-0001EsuBft559_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_230 246249..249178 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft559_9a-0001-exonEsuBft559_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_230 246226..246302 -
EsuBft559_9a-0001-exonagat-exon-74110Ectocarpus subulatus male Bft15bexonScaffold_230 246576..246764 -
EsuBft559_9a-0001-exonagat-exon-74111Ectocarpus subulatus male Bft15bexonScaffold_230 247475..247609 -
EsuBft559_9a-0001-exonagat-exon-74113Ectocarpus subulatus male Bft15bexonScaffold_230 248091..248146 -
EsuBft559_9a-0001-exonagat-exon-74112Ectocarpus subulatus male Bft15bexonScaffold_230 249076..249601 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft559_9a-0001-exonagat-three_prime_utr-18372Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_230 246226..246248 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft559_9a-0001-cdsEsuBft559_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_230 246249..246302 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft559_9a-0001-exonagat-five_prime_utr-11666Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_230 249179..249601 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft559_9a-0001 ID=EsuBft559_9a-0001|Name=EsuBft559_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=983bp|location=Sequence derived from alignment at Scaffold_230:246226..249601- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AACAAGAGAGCGGAGCGCCGAGAGCACCCACGACGTATCATTTAGTCTTC
ATTGGATAGCCCTTCAAGCGACGCGACTGCAGTCGGTCTTCTCTACCAAA
GTATTCCTACGAGTGACTCTGCGACGGCTGCTGTGTTGGCTGTCGGCTGC
TGCGACAACAGCAGTGCACCTTGCGCGGGAGCAAGTGTTCCCGTCGTTCC
TCTCCTCTCTCTCTCGACTCCTTCCTCTCCGTCTATCTTGTTCCAGCGGG
CACAACAACCTCTGCCCAACCGCAGCTGTGAAAAGAATTCCTTTTGTTTG
GGCTGCCTTAGAATTGTGGGTAGGCGACAGCGTTACTGTGATACCGAGCA
CGGCGGATAGCCGGCATACATACACCCGGCGGGCGCAACTAGCAGGGAGG
GTTTGGGGACGAAATCATCAATCATGGGGGCCGCCTTCCAGCGCATGCTC
TCGGCGTTCTACACGCGACAGCTGGAAGTGGTGCTGGTCGGTCTGGAGAA
CAGCGGGAAGACGACCTTGATGAATGTTCTCGCTAGCGGTCACCCGGTGG
ACACGGTTCCCACCATCGGGCTCAACGTCAAGATGATCAAGCGGGGCGGG
GTGCAAATGAAGTGCTGGGACATCGGGGGACAGGCCCAGTACCGTGGCGA
GTGGGGCCGCTACACCAGAGGGTGCGACGTGATCGTCTACGTTGTTGATG
CTCACGCCGAGGAGAAGGCGGCGCTCGCCAGACGAGAACTGCATCGATTA
CTGGAGGACGAGGAGCTGGCGTCTACGCCGCTGCTGGTGTTGGCGAACAA
GGTTGATCTGGAGCCGCATATGAGCGAGGACCAGGTCATCCGGGAGTTGA
ATCTCGACTACGTGACCGCAAACCCTTGGATTCTTATCCCGATATCTGCG
CTCAAGGTGATAAACATTGACCAGGTTTTGCAATGGCTCGTCAAGCAGTC
CCGAGGCTAGGCCGCATGCTCCTACCCCCCCCC
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protein sequence of EsuBft559_9a-0001

>EsuBft559_9 ID=EsuBft559_9|Name=EsuBft559_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=178bp
MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGL
NVKMIKRGGVQMKCWDIGGQAQYRGEWGRYTRGCDVIVYVVDAHAEEKAA
LARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTAN
PWILIPISALKVINIDQVLQWLVKQSRG
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mRNA from alignment at Scaffold_230:246226..249601-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft559_9a-0001 ID=EsuBft559_9a-0001|Name=EsuBft559_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3376bp|location=Sequence derived from alignment at Scaffold_230:246226..249601- (Ectocarpus subulatus male Bft15b)
AACAAGAGAGCGGAGCGCCGAGAGCACCCACGACGTATCATTTAGTCTTC
ATTGGATAGCCCTTCAAGCGACGCGACTGCAGTCGGTCTTCTCTACCAAA
GTATTCCTACGAGTGACTCTGCGACGGCTGCTGTGTTGGCTGTCGGCTGC
TGCGACAACAGCAGTGCACCTTGCGCGGGAGCAAGTGTTCCCGTCGTTCC
TCTCCTCTCTCTCTCGACTCCTTCCTCTCCGTCTATCTTGTTCCAGCGGG
CACAACAACCTCTGCCCAACCGCAGCTGTGAAAAGAATTCCTTTTGTTTG
GGCTGCCTTAGAATTGTGGGTAGGCGACAGCGTTACTGTGATACCGAGCA
CGGCGGATAGCCGGCATACATACACCCGGCGGGCGCAACTAGCAGGGAGG
GTTTGGGGACGAAATCATCAATCATGGGGGCCGCCTTCCAGCGCATGCTC
TCGGCGTTCTACACGCGACAGCTGGAAGTGGTGCTGGTCGGTCTGGAGAA
CAGCGGGAAGACGACCTTGATGAATGGTGAGCGCGAAGCAAGTGCTTGGT
ATGCATCCGCCAAAGAGACCCAGCAGTACAACTTACAATTATCCCCTTGT
TGCAGGTACAGGGCGTTCAGCTGTTGCTGCATAAAGCGGTACGGTAATGG
CCTGTGGTGTTATGTTACAACACCAGAGTGCCCATGCAACCATGGCAGAT
GTTAAGCTTCGATCAGTGTGTACTTAATTTGCCCGATGCTTGCAGCCAGC
CCTCCGATAGGTCGACAAAGGTACTGCCGTACCTTTCGGCATTTAATGCG
GCGAGACTTTTGCAACACAGTTCCAGTGCGGCGAGACTCCACACACACCT
GGCCTAGGTTGCGGGGAAGTAACTGGTATGCCATCCGAGAGGAAGAAATC
ACGCGGTGCTCTCTCTGTGCTAGCACCGATAGCCAAGTCCATAAGATAGC
ATAAGACAGCACACAATCAAATAATGGCGTAGGGCTTAGAGTAGCGGTCA
CGGATTTTTTACATTTCTTCCTCGGCTTTCTGCAGACACATACGCCGCGT
TGCCGGCAACGTACTGCTGTACTGGGTACAAGGGTGCGCTGATCGCAGCT
GTATGTTGGGCTTTTGGGGGGGAGAGTGGTATCCTCAGGTCCGACAATTA
AAGGACAGGACAAAAATTGCGCAACTTCGTCCCGCACGGCGGTTGCCACA
AACTACTTCGGTTTTCCTACCTTTGTTGCGTGTGGAAGGGAGCAGTTACA
GGGTCAGTGCGGTCTGCTTTCGTCGTGAACAGTCCTCTAAACTTGCTTTC
TCGCGTACTGCATAGTTCGTTCTTTCAACAGGTCTGCTGTGTGTCTACGG
CGACAAAACGGTAAAAGCATACCCTATGCGTAGGACCAATCGCAACGCCT
CACGTACACCTCCGCGTGTTCGTGCGATGCTGCTATTCTGTCCGCTCCGC
CCCAGTTCTCGCTAGCGGTCACCCGGTGGACACGGTTCCCACCATCGGGC
TCAACGTCAAGGTGCAGTTGTCTTGGGCCTTTCCCTTCGTAGTTGTGATT
TCGGCGATCGCTTTGGTTAGTGGTCAGCGAATCTGGTGGCATGGGTTTAG
CGCAGTTGGCGACAGTAATCTCAAAAAATTTTGGCGTTCAGTCTTGTGAT
GCGGTGCAATCGCGCGCGCGAAAAAGGAGCTTATACGCGCACCTCGTGCG
CCTCTGGCGTCAACACATGCCGCGTCTCATCCCAACCCGACCTGGTTGTG
TCGCCCGGCTGTATGGCTTTCCTGGTACCAATGTCGTTTCAGTCGAGCAT
TTTCAGTCAAACTCAGCCAAACGTTTCGCCCAGGTCCTCTCCAGAGGCAC
ATATTGGCCCAAGTTTGACTACGCGCCGAAATGGCTGATGAATGGCTTCC
CCCATCCAATAAGGTTAGGCTTGCAACAGGTGGCGTGCGCTCATCTTTCA
AACGCGAGAACTGACCCCCCCGGACCAAAAAAAAATAATCAGATGATCAA
GCGGGGCGGGGTGCAAATGAAGTGCTGGGACATCGGGGGACAGGCCCAGT
ACCGTGGCGAGTGGGGCCGCTACACCAGAGGGTGCGACGTGATCGTCTAC
GTTGTTGATGCTCACGCCGAGGAGAAGGTGAAAACCCGCCAAAACGAAAA
GTATTTGTCCGGCTTCCAGGAGCCGGTCTTTCTCCCACTCACTTGGGCAA
TAGGACGGACGGCTGCTGTTATCTAGAACGGGTGGTCTTTTCTGGGGTTG
TATGTATGTTTTCTGAAAACGTCGCTTGCAAGAAATGGGCGCGTGCTTGT
CCCTCTCCTTTTAGTAAGATTGGTTGGAGAGGACCGTTGTTTATGGCTCT
AATCGGGCCAGGCAGGTGTCCTCCATGTTACTCGATCAAGCGATGCATAT
GAAAAACAATCTCCCCTCCCTAACACCCAACACCTACACCCACACGCCTT
CTGCTCCGCCTCGTCCCCCCCCCCCNNNNNNNNNNNNNNNNNNCCCCCCC
CCCCGCCGAGGGCCGCGCGAGCGAAGTGATAGCTTTCGCTCTGGTTAAAA
TGAGAGTGATTGCCCGGCTCAACCCCTCGACGACGTCCCGCTACTGATTC
GTCGCACCCACCTCCAGCATGACCATGCGCCTACACCCATGCCCCCCCCA
AAAATCAAACGTGTTGATGACCAGCTTCAGGTCCTTGTGAAGCGTAGCCT
GGGTCGGTGAAAACCGGGCATACCGCTCCCCCCCCCCCATTGTAGGGATG
CTTGGTGAACGGTCTTATCACGTTACGGCCTGCGTTGACGTGAGTACCAC
CCCCCTCCCCCCCCCCATTGGAAACCCCTCTGCCCAGGCGGCGCTCGCCA
GACGAGAACTGCATCGATTACTGGAGGACGAGGAGCTGGCGTCTACGCCG
CTGCTGGTGTTGGCGAACAAGGTTGATCTGGAGCCGCATATGAGCGAGGA
CCAGGTCATCCGGGAGTTGAATCTCGACTACGTGACCGCAAACCCTTGGA
TTCTTATCCCGATATCTGCGCTCAAGGTAAATCATGTTGCTTTTGGTGGG
TGGTGATGGTGATGGTGATGGTGCTGCTGCCGCTGCCGCTGCCGCCGCTG
CCGCTGTGACAATTGGTCCATGGTTCCTTTTTTGTAGTTCAAGTTTGTTA
TTGTGTGCCACTTCTTTGAGGTCGTCCATCCATGTGGCACGCGCAAGACA
GCCAGAACCAAATACAGTTGTTCATGTTTTTAGCTGGACGCATAACTTCG
CGATCCTTCCTCTCTCGCTCTGCCGCTGTTGAACGGAACGTGACAAAAGG
TGATAAACATTGACCAGGTTTTGCAATGGCTCGTCAAGCAGTCCCGAGGC
TAGGCCGCATGCTCCTACCCCCCCCC
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Coding sequence (CDS) from alignment at Scaffold_230:246226..249601-

>EsuBft559_9a-0001 ID=EsuBft559_9a-0001|Name=EsuBft559_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=537bp|location=Sequence derived from alignment at Scaffold_230:246226..249601- (Ectocarpus subulatus male Bft15b)
ATGGGGGCCGCCTTCCAGCGCATGCTCTCGGCGTTCTACACGCGACAGCT
GGAAGTGGTGCTGGTCGGTCTGGAGAACAGCGGGAAGACGACCTTGATGA
ATGTTCTCGCTAGCGGTCACCCGGTGGACACGGTTCCCACCATCGGGCTC
AACGTCAAGATGATCAAGCGGGGCGGGGTGCAAATGAAGTGCTGGGACAT
CGGGGGACAGGCCCAGTACCGTGGCGAGTGGGGCCGCTACACCAGAGGGT
GCGACGTGATCGTCTACGTTGTTGATGCTCACGCCGAGGAGAAGGCGGCG
CTCGCCAGACGAGAACTGCATCGATTACTGGAGGACGAGGAGCTGGCGTC
TACGCCGCTGCTGGTGTTGGCGAACAAGGTTGATCTGGAGCCGCATATGA
GCGAGGACCAGGTCATCCGGGAGTTGAATCTCGACTACGTGACCGCAAAC
CCTTGGATTCTTATCCCGATATCTGCGCTCAAGGTGATAAACATTGACCA
GGTTTTGCAATGGCTCGTCAAGCAGTCCCGAGGCTAG
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