EsuBft100_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft100_13a	EsuBft100_13a	Ectocarpus subulatus male Bft15b	gene	Scaffold_441 222067..226778 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_13a-0001	EsuBft100_13	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_441 222124..226253 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_13a-0001-exon	agat-exon-35323	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 222067..222267 +
EsuBft100_13a-0001-exon	agat-exon-35321	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 223562..223642 +
EsuBft100_13a-0001-exon	EsuBft100_13a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 223760..223917 +
EsuBft100_13a-0001-exon	agat-exon-35319	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 224407..224539 +
EsuBft100_13a-0001-exon	agat-exon-35322	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 224896..224988 +
EsuBft100_13a-0001-exon	agat-exon-35324	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 225113..225258 +
EsuBft100_13a-0001-exon	agat-exon-35318	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 225620..225871 +
EsuBft100_13a-0001-exon	agat-exon-35320	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 225995..226778 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_13a-0001-exon	agat-five_prime_utr-54	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_441 222067..222123 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_13a-0001-cds	EsuBft100_13a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_441 222124..222267 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_13a-0001-exon	agat-three_prime_utr-90	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_441 226254..226778 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_441:222067..226778+
coding sequence from alignment at Scaffold_441:222067..226778+

spliced messenger RNA

>EsuBft100_13a-0001 ID=EsuBft100_13a-0001|Name=EsuBft100_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1848bp|location=Sequence derived from alignment at Scaffold_441:222067..226778+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGTGCATGTGTGCATAACAACAAGCAGCGTACAGCCCACAGATTGTTCG
GTTGAATATGGTAGAGGGAGACAACTACGACTGGGCTCGTGCGAGTTTCT
GGACGGCGATCTCAGACACTGTGAGATTCTATCGCTGTCTTTTCTACTTC
CTGACGGGAGGGACTTACAAGGAGTGCCCGTACTTCGCGACCAGGTTGCA
GGCGCGCGTCCAATGCTACTCCTTGGGTCTTATCTTCTACCTCTGGTCCA
AGCCGCACTACCGCAATGCCTCCTTCAAAGAGGACATGTTTAAGAACTTG
AGGAATGTGGCAATCCCTGGAACCGGCATCCCTCTGAGCTTTTACTGCTC
CTTCAAAGCAATGGTTTACATCTTCATCTTGGTCGTCAACCCTGCCATCT
GCTTCATGGCGGCACTCAACCTGCAACGAAAACATGGCAGGCCGTGGGCA
CGAGCCTATATCGAACAGCTCCTTTGCCCTCAAGACTGGTTCAGTTTCTG
GCGTCTCAACTGCCGCTTGGCCAGCTACCATGCTCTTGTGACTGGAAGTG
AAGGTTACCGGCAAGAGGACAAGTGGACCTTCCTCAGGGATGGCAAGAGC
AAGGGGGTGCCGATTTCCCCGTTTCTCGACATACCGGCAGTCGTGATTAA
GGACAAAAACGAAGAGGGCGGGATGGGGCTTTACTTCTTCAAGAACGCCA
CAGCAGGAGGGGACTGGATCATTCAGGAGAGGCTTGACAATGATGAGTTT
GTAACATCACTCCTACCTGATAAGGCCCCTTTATCCACGATGAGGGTCAT
CAGCGCGTCCAGGTGGTGGCTTCAGAAGCGGCAGGGAAAGATTCCAGGGC
CAAGCTGTGTCGATTCGCTCTCATGCGTTTTTCGTGCGGGGCGCCAAGAC
GCTGACACAGACCACTCATCAATTCTCTTCGACGTCGACGCGAGCACAGG
CACGCTACTGAAGGGCACTACCAACGCTCACTGGTATGAGCTTGGCCCAA
CCAAGATGTTCAACACCCCTTGGGTATCTACTCACGATGTAACGCATCAC
CCGGACAACAACAAGTTGATCACGGGCGAAGTGATTCCAGACATTCAGGG
CAAGCTGGACCTTGTTGCCGACGCCCATTTCAAGCTGCTACCGGACGTCC
CGTTGGTAGGCTGGGACGTGGCTCTCACGACTAAGGGCGTGTATCTCCTC
GAGGTAAATCTGTCGTGCAACTTCTTCAGGGGCTCCTTCAGCTTGGGACC
GTACGTGCAGTTCGTGCACGACTACTTCGTAGCGCTCGAGGAAGAAAGGG
GGACGCATGGCAAGATAGAGTAGACCATGGGTTCAAGGGCTCCACCACGT
GGTAAGCTTTCTGCTGACGGTATTCAATGAAGCCTTGGTTTCGACCATCA
TTTGAGGCCCTGCAACCGGAGACGTCGTCAACCCATGGAGGGCATGTTCA
TCCTTTGTCTCCTTCTTTAGACAATCTCCTTCTTAGCACAAAGCAGTCCG
GAGGGTCGATACGCTTGTAGTAGTTCGCGATCGTCTCCTCGACATTGAAT
CCGTGCTCCTGCAAACGGGTCATTGGAATGTGTGGAGAAAAGAGCAGCGA
TAATCTGCTTTAACCCTTGATTGGAGAAGCATTGCATTATTGGCTTCGGG
CCATGTTGCCGGTCGCTTGGATTGCTTCCGTCGCTGAGGGGCGGTAACGG
GTACAGGAAAGGGAAAGGGTATTGGTGAGGGTTTGAGCTCCAAGCGGTGG
AGACAGGGAAGAGACCGAGAGTATTGGTAAGAGTTCACGGGTTGCTGTGT
GTTTAGGTACCTTGTGCCATCCGTCGGGTCCAACTGACGCGGACGCCT

protein sequence of EsuBft100_13a-0001

>EsuBft100_13 ID=EsuBft100_13|Name=EsuBft100_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=421bp
MVEGDNYDWARASFWTAISDTVRFYRCLFYFLTGGTYKECPYFATRLQAR
VQCYSLGLIFYLWSKPHYRNASFKEDMFKNLRNVAIPGTGIPLSFYCSFK
AMVYIFILVVNPAICFMAALNLQRKHGRPWARAYIEQLLCPQDWFSFWRL
NCRLASYHALVTGSEGYRQEDKWTFLRDGKSKGVPISPFLDIPAVVIKDK
NEEGGMGLYFFKNATAGGDWIIQERLDNDEFVTSLLPDKAPLSTMRVISA
SRWWLQKRQGKIPGPSCVDSLSCVFRAGRQDADTDHSSILFDVDASTGTL
LKGTTNAHWYELGPTKMFNTPWVSTHDVTHHPDNNKLITGEVIPDIQGKL
DLVADAHFKLLPDVPLVGWDVALTTKGVYLLEVNLSCNFFRGSFSLGPYV
QFVHDYFVALEEERGTHGKIE

mRNA from alignment at Scaffold_441:222067..226778+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft100_13a-0001 ID=EsuBft100_13a-0001|Name=EsuBft100_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4712bp|location=Sequence derived from alignment at Scaffold_441:222067..226778+ (Ectocarpus subulatus male Bft15b)
GTGTGCATGTGTGCATAACAACAAGCAGCGTACAGCCCACAGATTGTTCG
GTTGAATATGGTAGAGGGAGACAACTACGACTGGGCTCGTGCGAGTTTCT
GGACGGCGATCTCAGACACTGTGAGATTCTATCGCTGTCTTTTCTACTTC
CTGACGGGAGGGACTTACAAGGAGTGCCCGTACTTCGCGACCAGGTTGCA
GGTGGGGAACTTTGTGATGATATACGTGTTCTGTTCAACGTAACTCGACC
GAGAATACGTCCTCTGCTCAAACCGCGAGATTGGTGTCACTTAAACCGAC
AGTTTCGTGGGAGGGAAGGAGCAACCACGTCGAACTCATGTTCAAGTTGA
AGCAGTTGCGTGCGTACTTGCACACCCCGCAGCATGTATCAACTGCTGGG
CGGCACACATGAAAAAATCAAAGGGTAACGTACCAGCACCAGGCACTACG
CACCAGGGCATGTTGGAGTAACGGAGCCAACAGGGCAAAGAGGCGTGTGT
GTGTAGTTTGGCGTTTTGGTTTTCCGGGGACGCGCCTCCCGCAGCCCAGG
GCACAAAGAAGCGCGATGTAGTCCGGAGGTGTTGCCCCCCCCCCCCTCCC
CCTGGTTTGAAGAATTTGCAAGTCTGGGGTATGCAGGGGCTCCGTGCCAT
GAATGCATGCATGCGGTGTGACCGCTGAGATGATCATGTCGTAACTGCTG
GATACAGACAGATACAGGACACACACCGAAGATGCACACAGACAGCCGTG
AGATACAAACACGTGCAATAGCTGGCAACCTGTGTAGCTATGATGTGTGG
TTGTACGTTCATTTGATGAGATGATGTGTACGTGATGTGTACACACAAAG
CAGCAGCAGCAGTCTAGCAGTCAGTGGTTTGCTTGGTCCACCACCAGTGC
CGGGGGGGGTAAACCTCCCCGGGACCCCCCCCTCACCCACGCGTGGTTTG
CTTGGTTCACCAAACGCGTGGTTTGCTTGGTTCACCAAACGCGTGGTTTG
CTTGGTCCAAAATATATTTACTTGATTTGTAACAAATCACAGTTACGGAG
ATACCTTGCTGTCGGTGCTAGATTTGCACACCTCCCTCTGAGCCAAGGAG
TTTTAGGTTGCGTGGAGACCGCTTTGCCAGAAAGAAGTTATTCGGCAATG
CAAATTGAAGTCCCACCAGCAATCGGAGACGGCAGGGCAGTGTCGCGACG
GGTGTAGACTGCTGTATTTCAACGGCCGCCCAAAGTCGTGGTGCCTCAGT
AGTGCCGATGGAAAAGTGCCACTGCCTGGTACAGCGCCGTTATATCTCAC
GGTACAGACGAAATCCGCGGTATCGCCTGTACCGTTTGTTGCGCCGGTTC
GGGCTCCTACTCGGTGAACACACACATCCCACACACCACAACCCCACGGC
AAATCCACTCATAACCAAACACTGCCACCGTCATGTTGATCTGCCCTTAT
CCATTTCTTTGAATGGACTAAACTTGCCCGCATCAAACGTTGCAGGCGCG
CGTCCAATGCTACTCCTTGGGTCTTATCTTCTACCTCTGGTCCAAGCCGC
ACTACCGCAATGCCTCCTTCAAAGAGGTGGGTTCGCACGGGATTCATATA
TTCCGAACTGTGTATCCGCAAGTCCTTACCGCAATAAAATGCTCACATGC
ACAAAGTCTGCGCTAACGCGCTCGTCATATGGGTGATGGTCAGGACATGT
TTAAGAACTTGAGGAATGTGGCAATCCCTGGAACCGGCATCCCTCTGAGC
TTTTACTGCTCCTTCAAAGCAATGGTTTACATCTTCATCTTGGTCGTCAA
CCCTGCCATCTGCTTCATGGCGGCACTCAACCTGCAACGAAAACATGGCA
GGTGCGATACGATCAAAGCAGGTGCGCAATATTTGGCGAAGAGATCAAAC
TCGAAACATGTAGTTCGGAAGCTTCGTAGCGATCTGTGCGCCATGGTCTT
GCGTCACTTTTTCTCCGCAGAATAGTCCGGCTATGTTTCTTTTGACCAAG
GCAATGGTTACCTTTCATTCACGTTCATACTCAACTAGTGTGCAGCGCTC
TAGCTGTGTTTGTGTTGAAAGGTAACTTTGTTCGCTCTGAAACACTCAGT
GTGTTGGGGTGTGGGACCGTGTGGCAGGTTACGTTCCCTCGCTTGCGGCA
AGCACGACAGCAACACACACGAGCTGGTAGTATTATGTACCGCAAGCTGC
TGAAGGCAGGTTGGCAAGATGTTGTATGTTGCTCTCCGCTTCCTTACAGT
ATCAAGATTTGGGTTTTCTGTGCAGCTGCGTCGCCCGTTGGTCTAAATAA
GTCTTGTCTTTGTGTGTTGTTTCGCAAACGCCGGAAACAGGCCGTGGGCA
CGAGCCTATATCGAACAGCTCCTTTGCCCTCAAGACTGGTTCAGTTTCTG
GCGTCTCAACTGCCGCTTGGCCAGCTACCATGCTCTTGTGACTGGAAGTG
AAGGTTACCGGCAAGAGGACAAGGTGAGTCACTACGTAGCGTAACTACGC
CCGTCGTCCTATGTGAATGGCACGGCCCTTTGACTGCTGTGTTGCACGCA
TACATACGCAGTGTAGAGCTCTCGTCCACGGACGGTGGTACTTGCGTGTT
CGAAAGAATAGTAGGTGCTGTAGTGCCCTCGGGGCTTGTGCGGCCAAGGT
AGAGGTCTGATATCAGACCACCTGTGTCAACTATTGTTTTGATACGCAAC
GCTCCCGTTCAGATGGCGATCTGGTGTGGCACTATTTTTTCAAGTACAGG
CAGCGATAGCGTTTGTGATAACACGCGTTGCTGTTGTGTTTTTGTGGCCC
CCGAACGACCTTGCCTCGTGTGTGGACAGTGGACCTTCCTCAGGGATGGC
AAGAGCAAGGGGGTGCCGATTTCCCCGTTTCTCGACATACCGGCAGTCGT
GATTAAGGACAAAAACGAAGAGGTGAGAAAATGCGCGTGGTATGCATGCA
TATCCGATTGAAGGCTCCAGTGACGTACGTGCTGTATATCTTGGCCTCGT
GGTGTCTGTTTCAAGCCGTCGTCTGTTTCGAACTTTCTAAACATAGGGCG
GGATGGGGCTTTACTTCTTCAAGAACGCCACAGCAGGAGGGGACTGGATC
ATTCAGGAGAGGCTTGACAATGATGAGTTTGTAACATCACTCCTACCTGA
TAAGGCCCCTTTATCCACGATGAGGGTCATCAGCGCGTCCAGGTGAGATC
AGTTTCGATTGGGGATCACCGAGGCCCAGTTCATGAACAAGTGAAAAGAG
TGCGCAAGGCTACCATTCCAATAGACGCGTGGTGGATTTTGCTGGTCGCC
GCTGAGGTGTTAATTAGTTTGGTCGAAAGCGGGTTAACAGCATCTCAGCC
TTGGGTGGATATAGCCGGCGTCCACAAGCTTGTCGTTAGCCTCGCCTTTT
TGGGTTGTTGAAGCGATGACGTGGTAGGTCAAGGTATTTTTGGATAGGGT
TCTCCCGCGACTGGCGAATTCGTTCTGAAGGTGGCGCCGGTTAGCGATGA
CTTATGTGCTGAAGCCTGTCGAATTTGTCTGCGTTATTCGCGAACTGCGA
CAGGTGGTGGCTTCAGAAGCGGCAGGGAAAGATTCCAGGGCCAAGCTGTG
TCGATTCGCTCTCATGCGTTTTTCGTGCGGGGCGCCAAGACGCTGACACA
GACCACTCATCAATTCTCTTCGACGTCGACGCGAGCACAGGCACGCTACT
GAAGGGCACTACCAACGCTCACTGGTATGAGCTTGGCCCAACCAAGATGT
TCAACACCCCTTGGGTATCTACTCACGATGTAACGCATCACCCGGACAAC
AACAAGTGAGTTGGGGATGTTGCTGTCGGTTACATCTGCCTCGTACATTT
TTGCACGTAGACACGCTTTGTGGTCGCTTTCCCATATAACGCATTTACTG
CGTCGACTTAACCAATGGTGATCTTCAGGTTGATCACGGGCGAAGTGATT
CCAGACATTCAGGGCAAGCTGGACCTTGTTGCCGACGCCCATTTCAAGCT
GCTACCGGACGTCCCGTTGGTAGGCTGGGACGTGGCTCTCACGACTAAGG
GCGTGTATCTCCTCGAGGTAAATCTGTCGTGCAACTTCTTCAGGGGCTCC
TTCAGCTTGGGACCGTACGTGCAGTTCGTGCACGACTACTTCGTAGCGCT
CGAGGAAGAAAGGGGGACGCATGGCAAGATAGAGTAGACCATGGGTTCAA
GGGCTCCACCACGTGGTAAGCTTTCTGCTGACGGTATTCAATGAAGCCTT
GGTTTCGACCATCATTTGAGGCCCTGCAACCGGAGACGTCGTCAACCCAT
GGAGGGCATGTTCATCCTTTGTCTCCTTCTTTAGACAATCTCCTTCTTAG
CACAAAGCAGTCCGGAGGGTCGATACGCTTGTAGTAGTTCGCGATCGTCT
CCTCGACATTGAATCCGTGCTCCTGCAAACGGGTCATTGGAATGTGTGGA
GAAAAGAGCAGCGATAATCTGCTTTAACCCTTGATTGGAGAAGCATTGCA
TTATTGGCTTCGGGCCATGTTGCCGGTCGCTTGGATTGCTTCCGTCGCTG
AGGGGCGGTAACGGGTACAGGAAAGGGAAAGGGTATTGGTGAGGGTTTGA
GCTCCAAGCGGTGGAGACAGGGAAGAGACCGAGAGTATTGGTAAGAGTTC
ACGGGTTGCTGTGTGTTTAGGTACCTTGTGCCATCCGTCGGGTCCAACTG
ACGCGGACGCCT

Coding sequence (CDS) from alignment at Scaffold_441:222067..226778+

>EsuBft100_13a-0001 ID=EsuBft100_13a-0001|Name=EsuBft100_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1266bp|location=Sequence derived from alignment at Scaffold_441:222067..226778+ (Ectocarpus subulatus male Bft15b)
ATGGTAGAGGGAGACAACTACGACTGGGCTCGTGCGAGTTTCTGGACGGC
GATCTCAGACACTGTGAGATTCTATCGCTGTCTTTTCTACTTCCTGACGG
GAGGGACTTACAAGGAGTGCCCGTACTTCGCGACCAGGTTGCAGGCGCGC
GTCCAATGCTACTCCTTGGGTCTTATCTTCTACCTCTGGTCCAAGCCGCA
CTACCGCAATGCCTCCTTCAAAGAGGACATGTTTAAGAACTTGAGGAATG
TGGCAATCCCTGGAACCGGCATCCCTCTGAGCTTTTACTGCTCCTTCAAA
GCAATGGTTTACATCTTCATCTTGGTCGTCAACCCTGCCATCTGCTTCAT
GGCGGCACTCAACCTGCAACGAAAACATGGCAGGCCGTGGGCACGAGCCT
ATATCGAACAGCTCCTTTGCCCTCAAGACTGGTTCAGTTTCTGGCGTCTC
AACTGCCGCTTGGCCAGCTACCATGCTCTTGTGACTGGAAGTGAAGGTTA
CCGGCAAGAGGACAAGTGGACCTTCCTCAGGGATGGCAAGAGCAAGGGGG
TGCCGATTTCCCCGTTTCTCGACATACCGGCAGTCGTGATTAAGGACAAA
AACGAAGAGGGCGGGATGGGGCTTTACTTCTTCAAGAACGCCACAGCAGG
AGGGGACTGGATCATTCAGGAGAGGCTTGACAATGATGAGTTTGTAACAT
CACTCCTACCTGATAAGGCCCCTTTATCCACGATGAGGGTCATCAGCGCG
TCCAGGTGGTGGCTTCAGAAGCGGCAGGGAAAGATTCCAGGGCCAAGCTG
TGTCGATTCGCTCTCATGCGTTTTTCGTGCGGGGCGCCAAGACGCTGACA
CAGACCACTCATCAATTCTCTTCGACGTCGACGCGAGCACAGGCACGCTA
CTGAAGGGCACTACCAACGCTCACTGGTATGAGCTTGGCCCAACCAAGAT
GTTCAACACCCCTTGGGTATCTACTCACGATGTAACGCATCACCCGGACA
ACAACAAGTTGATCACGGGCGAAGTGATTCCAGACATTCAGGGCAAGCTG
GACCTTGTTGCCGACGCCCATTTCAAGCTGCTACCGGACGTCCCGTTGGT
AGGCTGGGACGTGGCTCTCACGACTAAGGGCGTGTATCTCCTCGAGGTAA
ATCTGTCGTGCAACTTCTTCAGGGGCTCCTTCAGCTTGGGACCGTACGTG
CAGTTCGTGCACGACTACTTCGTAGCGCTCGAGGAAGAAAGGGGGACGCA
TGGCAAGATAGAGTAG