Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LRT2 |
| ProteomeId | EsuBft100_13 |
| Protein domains | TMhelix |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Protein domains | PF14397 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 8 |
| Max annot lvl | 2759|Eukaryota |
| Length | 184 |
| Hectar predicted targeting category | other localisation |
| Evalue | 0.0 |
| EggNOG OGs | 293NF@1|root,2RAJ8@2759|Eukaryota |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-08_002330.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft100_13a-0001 ID=EsuBft100_13a-0001|Name=EsuBft100_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1848bp|location=Sequence derived from alignment at Scaffold_441:222067..226778+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTGTGCATGTGTGCATAACAACAAGCAGCGTACAGCCCACAGATTGTTCG
GTTGAATATGGTAGAGGGAGACAACTACGACTGGGCTCGTGCGAGTTTCT
GGACGGCGATCTCAGACACTGTGAGATTCTATCGCTGTCTTTTCTACTTC
CTGACGGGAGGGACTTACAAGGAGTGCCCGTACTTCGCGACCAGGTTGCA
GGCGCGCGTCCAATGCTACTCCTTGGGTCTTATCTTCTACCTCTGGTCCA
AGCCGCACTACCGCAATGCCTCCTTCAAAGAGGACATGTTTAAGAACTTG
AGGAATGTGGCAATCCCTGGAACCGGCATCCCTCTGAGCTTTTACTGCTC
CTTCAAAGCAATGGTTTACATCTTCATCTTGGTCGTCAACCCTGCCATCT
GCTTCATGGCGGCACTCAACCTGCAACGAAAACATGGCAGGCCGTGGGCA
CGAGCCTATATCGAACAGCTCCTTTGCCCTCAAGACTGGTTCAGTTTCTG
GCGTCTCAACTGCCGCTTGGCCAGCTACCATGCTCTTGTGACTGGAAGTG
AAGGTTACCGGCAAGAGGACAAGTGGACCTTCCTCAGGGATGGCAAGAGC
AAGGGGGTGCCGATTTCCCCGTTTCTCGACATACCGGCAGTCGTGATTAA
GGACAAAAACGAAGAGGGCGGGATGGGGCTTTACTTCTTCAAGAACGCCA
CAGCAGGAGGGGACTGGATCATTCAGGAGAGGCTTGACAATGATGAGTTT
GTAACATCACTCCTACCTGATAAGGCCCCTTTATCCACGATGAGGGTCAT
CAGCGCGTCCAGGTGGTGGCTTCAGAAGCGGCAGGGAAAGATTCCAGGGC
CAAGCTGTGTCGATTCGCTCTCATGCGTTTTTCGTGCGGGGCGCCAAGAC
GCTGACACAGACCACTCATCAATTCTCTTCGACGTCGACGCGAGCACAGG
CACGCTACTGAAGGGCACTACCAACGCTCACTGGTATGAGCTTGGCCCAA
CCAAGATGTTCAACACCCCTTGGGTATCTACTCACGATGTAACGCATCAC
CCGGACAACAACAAGTTGATCACGGGCGAAGTGATTCCAGACATTCAGGG
CAAGCTGGACCTTGTTGCCGACGCCCATTTCAAGCTGCTACCGGACGTCC
CGTTGGTAGGCTGGGACGTGGCTCTCACGACTAAGGGCGTGTATCTCCTC
GAGGTAAATCTGTCGTGCAACTTCTTCAGGGGCTCCTTCAGCTTGGGACC
GTACGTGCAGTTCGTGCACGACTACTTCGTAGCGCTCGAGGAAGAAAGGG
GGACGCATGGCAAGATAGAGTAGACCATGGGTTCAAGGGCTCCACCACGT
GGTAAGCTTTCTGCTGACGGTATTCAATGAAGCCTTGGTTTCGACCATCA
TTTGAGGCCCTGCAACCGGAGACGTCGTCAACCCATGGAGGGCATGTTCA
TCCTTTGTCTCCTTCTTTAGACAATCTCCTTCTTAGCACAAAGCAGTCCG
GAGGGTCGATACGCTTGTAGTAGTTCGCGATCGTCTCCTCGACATTGAAT
CCGTGCTCCTGCAAACGGGTCATTGGAATGTGTGGAGAAAAGAGCAGCGA
TAATCTGCTTTAACCCTTGATTGGAGAAGCATTGCATTATTGGCTTCGGG
CCATGTTGCCGGTCGCTTGGATTGCTTCCGTCGCTGAGGGGCGGTAACGG
GTACAGGAAAGGGAAAGGGTATTGGTGAGGGTTTGAGCTCCAAGCGGTGG
AGACAGGGAAGAGACCGAGAGTATTGGTAAGAGTTCACGGGTTGCTGTGT
GTTTAGGTACCTTGTGCCATCCGTCGGGTCCAACTGACGCGGACGCCT back to topprotein sequence of EsuBft100_13a-0001 >EsuBft100_13 ID=EsuBft100_13|Name=EsuBft100_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=421bp
MVEGDNYDWARASFWTAISDTVRFYRCLFYFLTGGTYKECPYFATRLQAR
VQCYSLGLIFYLWSKPHYRNASFKEDMFKNLRNVAIPGTGIPLSFYCSFK
AMVYIFILVVNPAICFMAALNLQRKHGRPWARAYIEQLLCPQDWFSFWRL
NCRLASYHALVTGSEGYRQEDKWTFLRDGKSKGVPISPFLDIPAVVIKDK
NEEGGMGLYFFKNATAGGDWIIQERLDNDEFVTSLLPDKAPLSTMRVISA
SRWWLQKRQGKIPGPSCVDSLSCVFRAGRQDADTDHSSILFDVDASTGTL
LKGTTNAHWYELGPTKMFNTPWVSTHDVTHHPDNNKLITGEVIPDIQGKL
DLVADAHFKLLPDVPLVGWDVALTTKGVYLLEVNLSCNFFRGSFSLGPYV
QFVHDYFVALEEERGTHGKIE back to topmRNA from alignment at Scaffold_441:222067..226778+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft100_13a-0001 ID=EsuBft100_13a-0001|Name=EsuBft100_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4712bp|location=Sequence derived from alignment at Scaffold_441:222067..226778+ (Ectocarpus subulatus male Bft15b)
GTGTGCATGTGTGCATAACAACAAGCAGCGTACAGCCCACAGATTGTTCG
GTTGAATATGGTAGAGGGAGACAACTACGACTGGGCTCGTGCGAGTTTCT
GGACGGCGATCTCAGACACTGTGAGATTCTATCGCTGTCTTTTCTACTTC
CTGACGGGAGGGACTTACAAGGAGTGCCCGTACTTCGCGACCAGGTTGCA
GGTGGGGAACTTTGTGATGATATACGTGTTCTGTTCAACGTAACTCGACC
GAGAATACGTCCTCTGCTCAAACCGCGAGATTGGTGTCACTTAAACCGAC
AGTTTCGTGGGAGGGAAGGAGCAACCACGTCGAACTCATGTTCAAGTTGA
AGCAGTTGCGTGCGTACTTGCACACCCCGCAGCATGTATCAACTGCTGGG
CGGCACACATGAAAAAATCAAAGGGTAACGTACCAGCACCAGGCACTACG
CACCAGGGCATGTTGGAGTAACGGAGCCAACAGGGCAAAGAGGCGTGTGT
GTGTAGTTTGGCGTTTTGGTTTTCCGGGGACGCGCCTCCCGCAGCCCAGG
GCACAAAGAAGCGCGATGTAGTCCGGAGGTGTTGCCCCCCCCCCCCTCCC
CCTGGTTTGAAGAATTTGCAAGTCTGGGGTATGCAGGGGCTCCGTGCCAT
GAATGCATGCATGCGGTGTGACCGCTGAGATGATCATGTCGTAACTGCTG
GATACAGACAGATACAGGACACACACCGAAGATGCACACAGACAGCCGTG
AGATACAAACACGTGCAATAGCTGGCAACCTGTGTAGCTATGATGTGTGG
TTGTACGTTCATTTGATGAGATGATGTGTACGTGATGTGTACACACAAAG
CAGCAGCAGCAGTCTAGCAGTCAGTGGTTTGCTTGGTCCACCACCAGTGC
CGGGGGGGGTAAACCTCCCCGGGACCCCCCCCTCACCCACGCGTGGTTTG
CTTGGTTCACCAAACGCGTGGTTTGCTTGGTTCACCAAACGCGTGGTTTG
CTTGGTCCAAAATATATTTACTTGATTTGTAACAAATCACAGTTACGGAG
ATACCTTGCTGTCGGTGCTAGATTTGCACACCTCCCTCTGAGCCAAGGAG
TTTTAGGTTGCGTGGAGACCGCTTTGCCAGAAAGAAGTTATTCGGCAATG
CAAATTGAAGTCCCACCAGCAATCGGAGACGGCAGGGCAGTGTCGCGACG
GGTGTAGACTGCTGTATTTCAACGGCCGCCCAAAGTCGTGGTGCCTCAGT
AGTGCCGATGGAAAAGTGCCACTGCCTGGTACAGCGCCGTTATATCTCAC
GGTACAGACGAAATCCGCGGTATCGCCTGTACCGTTTGTTGCGCCGGTTC
GGGCTCCTACTCGGTGAACACACACATCCCACACACCACAACCCCACGGC
AAATCCACTCATAACCAAACACTGCCACCGTCATGTTGATCTGCCCTTAT
CCATTTCTTTGAATGGACTAAACTTGCCCGCATCAAACGTTGCAGGCGCG
CGTCCAATGCTACTCCTTGGGTCTTATCTTCTACCTCTGGTCCAAGCCGC
ACTACCGCAATGCCTCCTTCAAAGAGGTGGGTTCGCACGGGATTCATATA
TTCCGAACTGTGTATCCGCAAGTCCTTACCGCAATAAAATGCTCACATGC
ACAAAGTCTGCGCTAACGCGCTCGTCATATGGGTGATGGTCAGGACATGT
TTAAGAACTTGAGGAATGTGGCAATCCCTGGAACCGGCATCCCTCTGAGC
TTTTACTGCTCCTTCAAAGCAATGGTTTACATCTTCATCTTGGTCGTCAA
CCCTGCCATCTGCTTCATGGCGGCACTCAACCTGCAACGAAAACATGGCA
GGTGCGATACGATCAAAGCAGGTGCGCAATATTTGGCGAAGAGATCAAAC
TCGAAACATGTAGTTCGGAAGCTTCGTAGCGATCTGTGCGCCATGGTCTT
GCGTCACTTTTTCTCCGCAGAATAGTCCGGCTATGTTTCTTTTGACCAAG
GCAATGGTTACCTTTCATTCACGTTCATACTCAACTAGTGTGCAGCGCTC
TAGCTGTGTTTGTGTTGAAAGGTAACTTTGTTCGCTCTGAAACACTCAGT
GTGTTGGGGTGTGGGACCGTGTGGCAGGTTACGTTCCCTCGCTTGCGGCA
AGCACGACAGCAACACACACGAGCTGGTAGTATTATGTACCGCAAGCTGC
TGAAGGCAGGTTGGCAAGATGTTGTATGTTGCTCTCCGCTTCCTTACAGT
ATCAAGATTTGGGTTTTCTGTGCAGCTGCGTCGCCCGTTGGTCTAAATAA
GTCTTGTCTTTGTGTGTTGTTTCGCAAACGCCGGAAACAGGCCGTGGGCA
CGAGCCTATATCGAACAGCTCCTTTGCCCTCAAGACTGGTTCAGTTTCTG
GCGTCTCAACTGCCGCTTGGCCAGCTACCATGCTCTTGTGACTGGAAGTG
AAGGTTACCGGCAAGAGGACAAGGTGAGTCACTACGTAGCGTAACTACGC
CCGTCGTCCTATGTGAATGGCACGGCCCTTTGACTGCTGTGTTGCACGCA
TACATACGCAGTGTAGAGCTCTCGTCCACGGACGGTGGTACTTGCGTGTT
CGAAAGAATAGTAGGTGCTGTAGTGCCCTCGGGGCTTGTGCGGCCAAGGT
AGAGGTCTGATATCAGACCACCTGTGTCAACTATTGTTTTGATACGCAAC
GCTCCCGTTCAGATGGCGATCTGGTGTGGCACTATTTTTTCAAGTACAGG
CAGCGATAGCGTTTGTGATAACACGCGTTGCTGTTGTGTTTTTGTGGCCC
CCGAACGACCTTGCCTCGTGTGTGGACAGTGGACCTTCCTCAGGGATGGC
AAGAGCAAGGGGGTGCCGATTTCCCCGTTTCTCGACATACCGGCAGTCGT
GATTAAGGACAAAAACGAAGAGGTGAGAAAATGCGCGTGGTATGCATGCA
TATCCGATTGAAGGCTCCAGTGACGTACGTGCTGTATATCTTGGCCTCGT
GGTGTCTGTTTCAAGCCGTCGTCTGTTTCGAACTTTCTAAACATAGGGCG
GGATGGGGCTTTACTTCTTCAAGAACGCCACAGCAGGAGGGGACTGGATC
ATTCAGGAGAGGCTTGACAATGATGAGTTTGTAACATCACTCCTACCTGA
TAAGGCCCCTTTATCCACGATGAGGGTCATCAGCGCGTCCAGGTGAGATC
AGTTTCGATTGGGGATCACCGAGGCCCAGTTCATGAACAAGTGAAAAGAG
TGCGCAAGGCTACCATTCCAATAGACGCGTGGTGGATTTTGCTGGTCGCC
GCTGAGGTGTTAATTAGTTTGGTCGAAAGCGGGTTAACAGCATCTCAGCC
TTGGGTGGATATAGCCGGCGTCCACAAGCTTGTCGTTAGCCTCGCCTTTT
TGGGTTGTTGAAGCGATGACGTGGTAGGTCAAGGTATTTTTGGATAGGGT
TCTCCCGCGACTGGCGAATTCGTTCTGAAGGTGGCGCCGGTTAGCGATGA
CTTATGTGCTGAAGCCTGTCGAATTTGTCTGCGTTATTCGCGAACTGCGA
CAGGTGGTGGCTTCAGAAGCGGCAGGGAAAGATTCCAGGGCCAAGCTGTG
TCGATTCGCTCTCATGCGTTTTTCGTGCGGGGCGCCAAGACGCTGACACA
GACCACTCATCAATTCTCTTCGACGTCGACGCGAGCACAGGCACGCTACT
GAAGGGCACTACCAACGCTCACTGGTATGAGCTTGGCCCAACCAAGATGT
TCAACACCCCTTGGGTATCTACTCACGATGTAACGCATCACCCGGACAAC
AACAAGTGAGTTGGGGATGTTGCTGTCGGTTACATCTGCCTCGTACATTT
TTGCACGTAGACACGCTTTGTGGTCGCTTTCCCATATAACGCATTTACTG
CGTCGACTTAACCAATGGTGATCTTCAGGTTGATCACGGGCGAAGTGATT
CCAGACATTCAGGGCAAGCTGGACCTTGTTGCCGACGCCCATTTCAAGCT
GCTACCGGACGTCCCGTTGGTAGGCTGGGACGTGGCTCTCACGACTAAGG
GCGTGTATCTCCTCGAGGTAAATCTGTCGTGCAACTTCTTCAGGGGCTCC
TTCAGCTTGGGACCGTACGTGCAGTTCGTGCACGACTACTTCGTAGCGCT
CGAGGAAGAAAGGGGGACGCATGGCAAGATAGAGTAGACCATGGGTTCAA
GGGCTCCACCACGTGGTAAGCTTTCTGCTGACGGTATTCAATGAAGCCTT
GGTTTCGACCATCATTTGAGGCCCTGCAACCGGAGACGTCGTCAACCCAT
GGAGGGCATGTTCATCCTTTGTCTCCTTCTTTAGACAATCTCCTTCTTAG
CACAAAGCAGTCCGGAGGGTCGATACGCTTGTAGTAGTTCGCGATCGTCT
CCTCGACATTGAATCCGTGCTCCTGCAAACGGGTCATTGGAATGTGTGGA
GAAAAGAGCAGCGATAATCTGCTTTAACCCTTGATTGGAGAAGCATTGCA
TTATTGGCTTCGGGCCATGTTGCCGGTCGCTTGGATTGCTTCCGTCGCTG
AGGGGCGGTAACGGGTACAGGAAAGGGAAAGGGTATTGGTGAGGGTTTGA
GCTCCAAGCGGTGGAGACAGGGAAGAGACCGAGAGTATTGGTAAGAGTTC
ACGGGTTGCTGTGTGTTTAGGTACCTTGTGCCATCCGTCGGGTCCAACTG
ACGCGGACGCCT back to topCoding sequence (CDS) from alignment at Scaffold_441:222067..226778+ >EsuBft100_13a-0001 ID=EsuBft100_13a-0001|Name=EsuBft100_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1266bp|location=Sequence derived from alignment at Scaffold_441:222067..226778+ (Ectocarpus subulatus male Bft15b)
ATGGTAGAGGGAGACAACTACGACTGGGCTCGTGCGAGTTTCTGGACGGC
GATCTCAGACACTGTGAGATTCTATCGCTGTCTTTTCTACTTCCTGACGG
GAGGGACTTACAAGGAGTGCCCGTACTTCGCGACCAGGTTGCAGGCGCGC
GTCCAATGCTACTCCTTGGGTCTTATCTTCTACCTCTGGTCCAAGCCGCA
CTACCGCAATGCCTCCTTCAAAGAGGACATGTTTAAGAACTTGAGGAATG
TGGCAATCCCTGGAACCGGCATCCCTCTGAGCTTTTACTGCTCCTTCAAA
GCAATGGTTTACATCTTCATCTTGGTCGTCAACCCTGCCATCTGCTTCAT
GGCGGCACTCAACCTGCAACGAAAACATGGCAGGCCGTGGGCACGAGCCT
ATATCGAACAGCTCCTTTGCCCTCAAGACTGGTTCAGTTTCTGGCGTCTC
AACTGCCGCTTGGCCAGCTACCATGCTCTTGTGACTGGAAGTGAAGGTTA
CCGGCAAGAGGACAAGTGGACCTTCCTCAGGGATGGCAAGAGCAAGGGGG
TGCCGATTTCCCCGTTTCTCGACATACCGGCAGTCGTGATTAAGGACAAA
AACGAAGAGGGCGGGATGGGGCTTTACTTCTTCAAGAACGCCACAGCAGG
AGGGGACTGGATCATTCAGGAGAGGCTTGACAATGATGAGTTTGTAACAT
CACTCCTACCTGATAAGGCCCCTTTATCCACGATGAGGGTCATCAGCGCG
TCCAGGTGGTGGCTTCAGAAGCGGCAGGGAAAGATTCCAGGGCCAAGCTG
TGTCGATTCGCTCTCATGCGTTTTTCGTGCGGGGCGCCAAGACGCTGACA
CAGACCACTCATCAATTCTCTTCGACGTCGACGCGAGCACAGGCACGCTA
CTGAAGGGCACTACCAACGCTCACTGGTATGAGCTTGGCCCAACCAAGAT
GTTCAACACCCCTTGGGTATCTACTCACGATGTAACGCATCACCCGGACA
ACAACAAGTTGATCACGGGCGAAGTGATTCCAGACATTCAGGGCAAGCTG
GACCTTGTTGCCGACGCCCATTTCAAGCTGCTACCGGACGTCCCGTTGGT
AGGCTGGGACGTGGCTCTCACGACTAAGGGCGTGTATCTCCTCGAGGTAA
ATCTGTCGTGCAACTTCTTCAGGGGCTCCTTCAGCTTGGGACCGTACGTG
CAGTTCGTGCACGACTACTTCGTAGCGCTCGAGGAAGAAAGGGGGACGCA
TGGCAAGATAGAGTAG back to top
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