EsuBft100_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft100_13a-0001
Unique NameEsuBft100_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_441contigScaffold_441:222067..226778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LRT2
ProteomeIdEsuBft100_13
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsPF14397
Ownerapollo_admin@sb-roscoff.fr
Nb exon8
Max annot lvl2759|Eukaryota
Length184
Hectar predicted targeting categoryother localisation
Evalue0.0
EggNOG OGs293NF@1|root,2RAJ8@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_002330.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft100_13aEsuBft100_13aEctocarpus subulatus male Bft15bgeneScaffold_441 222067..226778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_13a-0001EsuBft100_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_441 222124..226253 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_13a-0001-exonagat-exon-35323Ectocarpus subulatus male Bft15bexonScaffold_441 222067..222267 +
EsuBft100_13a-0001-exonagat-exon-35321Ectocarpus subulatus male Bft15bexonScaffold_441 223562..223642 +
EsuBft100_13a-0001-exonEsuBft100_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_441 223760..223917 +
EsuBft100_13a-0001-exonagat-exon-35319Ectocarpus subulatus male Bft15bexonScaffold_441 224407..224539 +
EsuBft100_13a-0001-exonagat-exon-35322Ectocarpus subulatus male Bft15bexonScaffold_441 224896..224988 +
EsuBft100_13a-0001-exonagat-exon-35324Ectocarpus subulatus male Bft15bexonScaffold_441 225113..225258 +
EsuBft100_13a-0001-exonagat-exon-35318Ectocarpus subulatus male Bft15bexonScaffold_441 225620..225871 +
EsuBft100_13a-0001-exonagat-exon-35320Ectocarpus subulatus male Bft15bexonScaffold_441 225995..226778 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_13a-0001-exonagat-five_prime_utr-54Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_441 222067..222123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_13a-0001-cdsEsuBft100_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_441 222124..222267 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_13a-0001-exonagat-three_prime_utr-90Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_441 226254..226778 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft100_13a-0001 ID=EsuBft100_13a-0001|Name=EsuBft100_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1848bp|location=Sequence derived from alignment at Scaffold_441:222067..226778+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGTGCATGTGTGCATAACAACAAGCAGCGTACAGCCCACAGATTGTTCG
GTTGAATATGGTAGAGGGAGACAACTACGACTGGGCTCGTGCGAGTTTCT
GGACGGCGATCTCAGACACTGTGAGATTCTATCGCTGTCTTTTCTACTTC
CTGACGGGAGGGACTTACAAGGAGTGCCCGTACTTCGCGACCAGGTTGCA
GGCGCGCGTCCAATGCTACTCCTTGGGTCTTATCTTCTACCTCTGGTCCA
AGCCGCACTACCGCAATGCCTCCTTCAAAGAGGACATGTTTAAGAACTTG
AGGAATGTGGCAATCCCTGGAACCGGCATCCCTCTGAGCTTTTACTGCTC
CTTCAAAGCAATGGTTTACATCTTCATCTTGGTCGTCAACCCTGCCATCT
GCTTCATGGCGGCACTCAACCTGCAACGAAAACATGGCAGGCCGTGGGCA
CGAGCCTATATCGAACAGCTCCTTTGCCCTCAAGACTGGTTCAGTTTCTG
GCGTCTCAACTGCCGCTTGGCCAGCTACCATGCTCTTGTGACTGGAAGTG
AAGGTTACCGGCAAGAGGACAAGTGGACCTTCCTCAGGGATGGCAAGAGC
AAGGGGGTGCCGATTTCCCCGTTTCTCGACATACCGGCAGTCGTGATTAA
GGACAAAAACGAAGAGGGCGGGATGGGGCTTTACTTCTTCAAGAACGCCA
CAGCAGGAGGGGACTGGATCATTCAGGAGAGGCTTGACAATGATGAGTTT
GTAACATCACTCCTACCTGATAAGGCCCCTTTATCCACGATGAGGGTCAT
CAGCGCGTCCAGGTGGTGGCTTCAGAAGCGGCAGGGAAAGATTCCAGGGC
CAAGCTGTGTCGATTCGCTCTCATGCGTTTTTCGTGCGGGGCGCCAAGAC
GCTGACACAGACCACTCATCAATTCTCTTCGACGTCGACGCGAGCACAGG
CACGCTACTGAAGGGCACTACCAACGCTCACTGGTATGAGCTTGGCCCAA
CCAAGATGTTCAACACCCCTTGGGTATCTACTCACGATGTAACGCATCAC
CCGGACAACAACAAGTTGATCACGGGCGAAGTGATTCCAGACATTCAGGG
CAAGCTGGACCTTGTTGCCGACGCCCATTTCAAGCTGCTACCGGACGTCC
CGTTGGTAGGCTGGGACGTGGCTCTCACGACTAAGGGCGTGTATCTCCTC
GAGGTAAATCTGTCGTGCAACTTCTTCAGGGGCTCCTTCAGCTTGGGACC
GTACGTGCAGTTCGTGCACGACTACTTCGTAGCGCTCGAGGAAGAAAGGG
GGACGCATGGCAAGATAGAGTAGACCATGGGTTCAAGGGCTCCACCACGT
GGTAAGCTTTCTGCTGACGGTATTCAATGAAGCCTTGGTTTCGACCATCA
TTTGAGGCCCTGCAACCGGAGACGTCGTCAACCCATGGAGGGCATGTTCA
TCCTTTGTCTCCTTCTTTAGACAATCTCCTTCTTAGCACAAAGCAGTCCG
GAGGGTCGATACGCTTGTAGTAGTTCGCGATCGTCTCCTCGACATTGAAT
CCGTGCTCCTGCAAACGGGTCATTGGAATGTGTGGAGAAAAGAGCAGCGA
TAATCTGCTTTAACCCTTGATTGGAGAAGCATTGCATTATTGGCTTCGGG
CCATGTTGCCGGTCGCTTGGATTGCTTCCGTCGCTGAGGGGCGGTAACGG
GTACAGGAAAGGGAAAGGGTATTGGTGAGGGTTTGAGCTCCAAGCGGTGG
AGACAGGGAAGAGACCGAGAGTATTGGTAAGAGTTCACGGGTTGCTGTGT
GTTTAGGTACCTTGTGCCATCCGTCGGGTCCAACTGACGCGGACGCCT
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protein sequence of EsuBft100_13a-0001

>EsuBft100_13 ID=EsuBft100_13|Name=EsuBft100_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=421bp
MVEGDNYDWARASFWTAISDTVRFYRCLFYFLTGGTYKECPYFATRLQAR
VQCYSLGLIFYLWSKPHYRNASFKEDMFKNLRNVAIPGTGIPLSFYCSFK
AMVYIFILVVNPAICFMAALNLQRKHGRPWARAYIEQLLCPQDWFSFWRL
NCRLASYHALVTGSEGYRQEDKWTFLRDGKSKGVPISPFLDIPAVVIKDK
NEEGGMGLYFFKNATAGGDWIIQERLDNDEFVTSLLPDKAPLSTMRVISA
SRWWLQKRQGKIPGPSCVDSLSCVFRAGRQDADTDHSSILFDVDASTGTL
LKGTTNAHWYELGPTKMFNTPWVSTHDVTHHPDNNKLITGEVIPDIQGKL
DLVADAHFKLLPDVPLVGWDVALTTKGVYLLEVNLSCNFFRGSFSLGPYV
QFVHDYFVALEEERGTHGKIE
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mRNA from alignment at Scaffold_441:222067..226778+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft100_13a-0001 ID=EsuBft100_13a-0001|Name=EsuBft100_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4712bp|location=Sequence derived from alignment at Scaffold_441:222067..226778+ (Ectocarpus subulatus male Bft15b)
GTGTGCATGTGTGCATAACAACAAGCAGCGTACAGCCCACAGATTGTTCG
GTTGAATATGGTAGAGGGAGACAACTACGACTGGGCTCGTGCGAGTTTCT
GGACGGCGATCTCAGACACTGTGAGATTCTATCGCTGTCTTTTCTACTTC
CTGACGGGAGGGACTTACAAGGAGTGCCCGTACTTCGCGACCAGGTTGCA
GGTGGGGAACTTTGTGATGATATACGTGTTCTGTTCAACGTAACTCGACC
GAGAATACGTCCTCTGCTCAAACCGCGAGATTGGTGTCACTTAAACCGAC
AGTTTCGTGGGAGGGAAGGAGCAACCACGTCGAACTCATGTTCAAGTTGA
AGCAGTTGCGTGCGTACTTGCACACCCCGCAGCATGTATCAACTGCTGGG
CGGCACACATGAAAAAATCAAAGGGTAACGTACCAGCACCAGGCACTACG
CACCAGGGCATGTTGGAGTAACGGAGCCAACAGGGCAAAGAGGCGTGTGT
GTGTAGTTTGGCGTTTTGGTTTTCCGGGGACGCGCCTCCCGCAGCCCAGG
GCACAAAGAAGCGCGATGTAGTCCGGAGGTGTTGCCCCCCCCCCCCTCCC
CCTGGTTTGAAGAATTTGCAAGTCTGGGGTATGCAGGGGCTCCGTGCCAT
GAATGCATGCATGCGGTGTGACCGCTGAGATGATCATGTCGTAACTGCTG
GATACAGACAGATACAGGACACACACCGAAGATGCACACAGACAGCCGTG
AGATACAAACACGTGCAATAGCTGGCAACCTGTGTAGCTATGATGTGTGG
TTGTACGTTCATTTGATGAGATGATGTGTACGTGATGTGTACACACAAAG
CAGCAGCAGCAGTCTAGCAGTCAGTGGTTTGCTTGGTCCACCACCAGTGC
CGGGGGGGGTAAACCTCCCCGGGACCCCCCCCTCACCCACGCGTGGTTTG
CTTGGTTCACCAAACGCGTGGTTTGCTTGGTTCACCAAACGCGTGGTTTG
CTTGGTCCAAAATATATTTACTTGATTTGTAACAAATCACAGTTACGGAG
ATACCTTGCTGTCGGTGCTAGATTTGCACACCTCCCTCTGAGCCAAGGAG
TTTTAGGTTGCGTGGAGACCGCTTTGCCAGAAAGAAGTTATTCGGCAATG
CAAATTGAAGTCCCACCAGCAATCGGAGACGGCAGGGCAGTGTCGCGACG
GGTGTAGACTGCTGTATTTCAACGGCCGCCCAAAGTCGTGGTGCCTCAGT
AGTGCCGATGGAAAAGTGCCACTGCCTGGTACAGCGCCGTTATATCTCAC
GGTACAGACGAAATCCGCGGTATCGCCTGTACCGTTTGTTGCGCCGGTTC
GGGCTCCTACTCGGTGAACACACACATCCCACACACCACAACCCCACGGC
AAATCCACTCATAACCAAACACTGCCACCGTCATGTTGATCTGCCCTTAT
CCATTTCTTTGAATGGACTAAACTTGCCCGCATCAAACGTTGCAGGCGCG
CGTCCAATGCTACTCCTTGGGTCTTATCTTCTACCTCTGGTCCAAGCCGC
ACTACCGCAATGCCTCCTTCAAAGAGGTGGGTTCGCACGGGATTCATATA
TTCCGAACTGTGTATCCGCAAGTCCTTACCGCAATAAAATGCTCACATGC
ACAAAGTCTGCGCTAACGCGCTCGTCATATGGGTGATGGTCAGGACATGT
TTAAGAACTTGAGGAATGTGGCAATCCCTGGAACCGGCATCCCTCTGAGC
TTTTACTGCTCCTTCAAAGCAATGGTTTACATCTTCATCTTGGTCGTCAA
CCCTGCCATCTGCTTCATGGCGGCACTCAACCTGCAACGAAAACATGGCA
GGTGCGATACGATCAAAGCAGGTGCGCAATATTTGGCGAAGAGATCAAAC
TCGAAACATGTAGTTCGGAAGCTTCGTAGCGATCTGTGCGCCATGGTCTT
GCGTCACTTTTTCTCCGCAGAATAGTCCGGCTATGTTTCTTTTGACCAAG
GCAATGGTTACCTTTCATTCACGTTCATACTCAACTAGTGTGCAGCGCTC
TAGCTGTGTTTGTGTTGAAAGGTAACTTTGTTCGCTCTGAAACACTCAGT
GTGTTGGGGTGTGGGACCGTGTGGCAGGTTACGTTCCCTCGCTTGCGGCA
AGCACGACAGCAACACACACGAGCTGGTAGTATTATGTACCGCAAGCTGC
TGAAGGCAGGTTGGCAAGATGTTGTATGTTGCTCTCCGCTTCCTTACAGT
ATCAAGATTTGGGTTTTCTGTGCAGCTGCGTCGCCCGTTGGTCTAAATAA
GTCTTGTCTTTGTGTGTTGTTTCGCAAACGCCGGAAACAGGCCGTGGGCA
CGAGCCTATATCGAACAGCTCCTTTGCCCTCAAGACTGGTTCAGTTTCTG
GCGTCTCAACTGCCGCTTGGCCAGCTACCATGCTCTTGTGACTGGAAGTG
AAGGTTACCGGCAAGAGGACAAGGTGAGTCACTACGTAGCGTAACTACGC
CCGTCGTCCTATGTGAATGGCACGGCCCTTTGACTGCTGTGTTGCACGCA
TACATACGCAGTGTAGAGCTCTCGTCCACGGACGGTGGTACTTGCGTGTT
CGAAAGAATAGTAGGTGCTGTAGTGCCCTCGGGGCTTGTGCGGCCAAGGT
AGAGGTCTGATATCAGACCACCTGTGTCAACTATTGTTTTGATACGCAAC
GCTCCCGTTCAGATGGCGATCTGGTGTGGCACTATTTTTTCAAGTACAGG
CAGCGATAGCGTTTGTGATAACACGCGTTGCTGTTGTGTTTTTGTGGCCC
CCGAACGACCTTGCCTCGTGTGTGGACAGTGGACCTTCCTCAGGGATGGC
AAGAGCAAGGGGGTGCCGATTTCCCCGTTTCTCGACATACCGGCAGTCGT
GATTAAGGACAAAAACGAAGAGGTGAGAAAATGCGCGTGGTATGCATGCA
TATCCGATTGAAGGCTCCAGTGACGTACGTGCTGTATATCTTGGCCTCGT
GGTGTCTGTTTCAAGCCGTCGTCTGTTTCGAACTTTCTAAACATAGGGCG
GGATGGGGCTTTACTTCTTCAAGAACGCCACAGCAGGAGGGGACTGGATC
ATTCAGGAGAGGCTTGACAATGATGAGTTTGTAACATCACTCCTACCTGA
TAAGGCCCCTTTATCCACGATGAGGGTCATCAGCGCGTCCAGGTGAGATC
AGTTTCGATTGGGGATCACCGAGGCCCAGTTCATGAACAAGTGAAAAGAG
TGCGCAAGGCTACCATTCCAATAGACGCGTGGTGGATTTTGCTGGTCGCC
GCTGAGGTGTTAATTAGTTTGGTCGAAAGCGGGTTAACAGCATCTCAGCC
TTGGGTGGATATAGCCGGCGTCCACAAGCTTGTCGTTAGCCTCGCCTTTT
TGGGTTGTTGAAGCGATGACGTGGTAGGTCAAGGTATTTTTGGATAGGGT
TCTCCCGCGACTGGCGAATTCGTTCTGAAGGTGGCGCCGGTTAGCGATGA
CTTATGTGCTGAAGCCTGTCGAATTTGTCTGCGTTATTCGCGAACTGCGA
CAGGTGGTGGCTTCAGAAGCGGCAGGGAAAGATTCCAGGGCCAAGCTGTG
TCGATTCGCTCTCATGCGTTTTTCGTGCGGGGCGCCAAGACGCTGACACA
GACCACTCATCAATTCTCTTCGACGTCGACGCGAGCACAGGCACGCTACT
GAAGGGCACTACCAACGCTCACTGGTATGAGCTTGGCCCAACCAAGATGT
TCAACACCCCTTGGGTATCTACTCACGATGTAACGCATCACCCGGACAAC
AACAAGTGAGTTGGGGATGTTGCTGTCGGTTACATCTGCCTCGTACATTT
TTGCACGTAGACACGCTTTGTGGTCGCTTTCCCATATAACGCATTTACTG
CGTCGACTTAACCAATGGTGATCTTCAGGTTGATCACGGGCGAAGTGATT
CCAGACATTCAGGGCAAGCTGGACCTTGTTGCCGACGCCCATTTCAAGCT
GCTACCGGACGTCCCGTTGGTAGGCTGGGACGTGGCTCTCACGACTAAGG
GCGTGTATCTCCTCGAGGTAAATCTGTCGTGCAACTTCTTCAGGGGCTCC
TTCAGCTTGGGACCGTACGTGCAGTTCGTGCACGACTACTTCGTAGCGCT
CGAGGAAGAAAGGGGGACGCATGGCAAGATAGAGTAGACCATGGGTTCAA
GGGCTCCACCACGTGGTAAGCTTTCTGCTGACGGTATTCAATGAAGCCTT
GGTTTCGACCATCATTTGAGGCCCTGCAACCGGAGACGTCGTCAACCCAT
GGAGGGCATGTTCATCCTTTGTCTCCTTCTTTAGACAATCTCCTTCTTAG
CACAAAGCAGTCCGGAGGGTCGATACGCTTGTAGTAGTTCGCGATCGTCT
CCTCGACATTGAATCCGTGCTCCTGCAAACGGGTCATTGGAATGTGTGGA
GAAAAGAGCAGCGATAATCTGCTTTAACCCTTGATTGGAGAAGCATTGCA
TTATTGGCTTCGGGCCATGTTGCCGGTCGCTTGGATTGCTTCCGTCGCTG
AGGGGCGGTAACGGGTACAGGAAAGGGAAAGGGTATTGGTGAGGGTTTGA
GCTCCAAGCGGTGGAGACAGGGAAGAGACCGAGAGTATTGGTAAGAGTTC
ACGGGTTGCTGTGTGTTTAGGTACCTTGTGCCATCCGTCGGGTCCAACTG
ACGCGGACGCCT
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Coding sequence (CDS) from alignment at Scaffold_441:222067..226778+

>EsuBft100_13a-0001 ID=EsuBft100_13a-0001|Name=EsuBft100_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1266bp|location=Sequence derived from alignment at Scaffold_441:222067..226778+ (Ectocarpus subulatus male Bft15b)
ATGGTAGAGGGAGACAACTACGACTGGGCTCGTGCGAGTTTCTGGACGGC
GATCTCAGACACTGTGAGATTCTATCGCTGTCTTTTCTACTTCCTGACGG
GAGGGACTTACAAGGAGTGCCCGTACTTCGCGACCAGGTTGCAGGCGCGC
GTCCAATGCTACTCCTTGGGTCTTATCTTCTACCTCTGGTCCAAGCCGCA
CTACCGCAATGCCTCCTTCAAAGAGGACATGTTTAAGAACTTGAGGAATG
TGGCAATCCCTGGAACCGGCATCCCTCTGAGCTTTTACTGCTCCTTCAAA
GCAATGGTTTACATCTTCATCTTGGTCGTCAACCCTGCCATCTGCTTCAT
GGCGGCACTCAACCTGCAACGAAAACATGGCAGGCCGTGGGCACGAGCCT
ATATCGAACAGCTCCTTTGCCCTCAAGACTGGTTCAGTTTCTGGCGTCTC
AACTGCCGCTTGGCCAGCTACCATGCTCTTGTGACTGGAAGTGAAGGTTA
CCGGCAAGAGGACAAGTGGACCTTCCTCAGGGATGGCAAGAGCAAGGGGG
TGCCGATTTCCCCGTTTCTCGACATACCGGCAGTCGTGATTAAGGACAAA
AACGAAGAGGGCGGGATGGGGCTTTACTTCTTCAAGAACGCCACAGCAGG
AGGGGACTGGATCATTCAGGAGAGGCTTGACAATGATGAGTTTGTAACAT
CACTCCTACCTGATAAGGCCCCTTTATCCACGATGAGGGTCATCAGCGCG
TCCAGGTGGTGGCTTCAGAAGCGGCAGGGAAAGATTCCAGGGCCAAGCTG
TGTCGATTCGCTCTCATGCGTTTTTCGTGCGGGGCGCCAAGACGCTGACA
CAGACCACTCATCAATTCTCTTCGACGTCGACGCGAGCACAGGCACGCTA
CTGAAGGGCACTACCAACGCTCACTGGTATGAGCTTGGCCCAACCAAGAT
GTTCAACACCCCTTGGGTATCTACTCACGATGTAACGCATCACCCGGACA
ACAACAAGTTGATCACGGGCGAAGTGATTCCAGACATTCAGGGCAAGCTG
GACCTTGTTGCCGACGCCCATTTCAAGCTGCTACCGGACGTCCCGTTGGT
AGGCTGGGACGTGGCTCTCACGACTAAGGGCGTGTATCTCCTCGAGGTAA
ATCTGTCGTGCAACTTCTTCAGGGGCTCCTTCAGCTTGGGACCGTACGTG
CAGTTCGTGCACGACTACTTCGTAGCGCTCGAGGAAGAAAGGGGGACGCA
TGGCAAGATAGAGTAG
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